IslandPathversion 1.0

IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.74 STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2998	 49.54	+1	3992559..3993983	-	474	73670558	-	Mbar_A3106	-	F0F1 ATP synthase subunit beta
2999	 33.78	-1	3994472..3994921	+	149	73670559	-	Mbar_A3107	-	hypothetical protein
3000	 41.38	0	3996007..3996714	+	235	73670560	-	Mbar_A3108	-	hypothetical protein
3001	 41.14	0	3996719..3997576	+	285	73670561	-	Mbar_A3109	-	response regulator receiver
3002	 41.18	0	3997783..3998508	-	241	73670562	-	Mbar_A3110	-	hypothetical protein
3003	 36.91	-1	3998908..3999633	-	241	73670563	-	Mbar_A3111	-	hypothetical protein
3004	 40.86	0	4001027..4001704	-	225	73670564	-	Mbar_A3112	-	potassium channel protein
3005	 41.95	0	4001968..4003011	-	347	73670565	-	Mbar_A3113	-	potassium channel protein
3006	 45.80	0	4003390..4005186	-	598	73670566	-	Mbar_A3114	-	sterol-regulatory element-binding protein intramembrane protease
3007	 41.82	0	4005709..4006026	+	105	73670567	-	Mbar_A3115	-	divalent cation tolerance protein
3008	 43.93	0	4007734..4008318	+	194	73670568	-	Mbar_A3116	-	hypothetical protein
3009	 45.50	0	4008668..4009078	+	136	73670569	-	Mbar_A3117	-	hypothetical protein
3010	 34.20	-1	4009182..4009529	-	115	73670570	-	Mbar_A3118	-	hypothetical protein
3011	 35.57	-1	4009517..4011169	-	550	73670571	-	Mbar_A3119	-	CRISPR-associated Cas1/Cas4 family protein
3012	 41.99	0	4011305..4012945	-	546	73670572	-	Mbar_A3120	-	hypothetical protein
3013	 40.10	0	4012950..4013999	-	349	73670573	-	Mbar_A3121	-	hypothetical protein
3014	 38.72	0	4014027..4016255	-	742	73670574	-	Mbar_A3122	-	hypothetical protein
3015	 39.65	0	4016248..4018779	-	843	73670575	-	Mbar_A3123	-	hypothetical protein
3016	 46.52	0	4020444..4020845	-	133	73670576	-	Mbar_A3125	-	phosphoribosylaminoimidazole carboxylase
3017	 40.28	0	4020866..4021153	-	95	73670577	-	Mbar_A3126	-	chorismate mutase
3018	 44.29	0	4021507..4022373	-	288	73670578	-	Mbar_A3127	-	shikimate kinase
3019	 41.20	0	4022691..4023605	+	304	73670579	-	Mbar_A3128	-	hypothetical protein
3020	 44.39	0	4024469..4025110	+	213	73670580	-	Mbar_A3129	-	GTP-binding protein
3021	 40.00	0	4025116..4025475	+	119	73670581	-	Mbar_A3130	-	hypothetical protein
3022	 38.79	0	4025490..4026002	+	170	73670582	-	Mbar_A3131	-	hypothetical protein
3023	 41.63	0	4026261..4026875	+	204	73670583	-	Mbar_A3132	-	hexulose-6-phosphate isomerase
3024	 47.80	+1	4026948..4028060	+	370	73670584	-	Mbar_A3133	-	aminotransferase
3025	 31.19	-2	4028765..4029184	-	139	73670585	-	Mbar_A3134	-	hypothetical protein
3026	 45.26	0	4030154..4030975	+	273	73670586	-	Mbar_A3135	-	cytochrome c-type biogenesis protein
3027	 37.00	0	4031590..4031916	-	108	73670587	-	Mbar_A3136	-	hypothetical protein
3028	 43.01	0	4033202..4033780	-	192	73670588	-	Mbar_A3137	-	hypothetical protein
3029	 40.23	0	4034938..4037331	+	797	73670589	-	Mbar_A3138	-	glycosyltransferase (group I)
3030	 45.89	0	4037612..4038646	+	344	73670590	-	Mbar_A3139	-	hypothetical protein
3031	 41.68	0	4038779..4040155	+	458	73670591	-	Mbar_A3140	-	mannose-6-phosphate isomerase, bifunctional enzyme
3032	 43.77	0	4040348..4040692	-	114	73670592	-	Mbar_A3141	-	hypothetical protein
3033	 48.68	+1	4041205..4041960	-	251	73670593	-	Mbar_A3142	-	metal dependent hydrolase
3034	 39.76	0	4042517..4044976	-	819	73670594	-	Mbar_A3143	-	cell surface protein
3035	 39.71	0	4045359..4048274	-	971	73670595	-	Mbar_A3144	-	hypothetical protein
3036	 38.56	0	4049113..4052403	-	1096	73670596	-	Mbar_A3145	-	hypothetical protein
3037	 34.97	-1	4052907..4053395	-	162	73670597	-	Mbar_A3146	-	MarR family protein
3038	 39.96	0	4054067..4054519	-	150	73670598	-	Mbar_A3147	-	universal stress protein
3039	 41.50	0	4054645..4055709	-	354	73670599	-	Mbar_A3148	-	hypothetical protein
3040	 39.67	0	4055702..4056838	-	378	73670600	-	Mbar_A3149	-	hypothetical protein
3041	 42.02	0	4056835..4059102	-	755	73670601	-	Mbar_A3150	-	RND superfamily protein
3042	 41.24	0	4060508..4060798	+	96	73670602	-	Mbar_A3151	-	hypothetical protein
3043	 40.74	0	4061828..4063123	+	431	73670603	-	Mbar_A3152	-	hypothetical protein
3044	 40.70	0	4063163..4065076	+	637	73670604	-	Mbar_A3153	-	hypothetical protein
3045	 41.72	0	4065141..4067036	+	631	73670605	-	Mbar_A3154	-	hypothetical protein
3046	 44.79	0	4067244..4067732	-	162	73670606	-	Mbar_A3155	-	hypothetical protein
3047	 41.33	0	4068023..4068397	+	124	73670607	-	Mbar_A3156	-	hypothetical protein
3048	 45.01	0	4070500..4071210	+	236	73670608	-	Mbar_A3159	-	FtsJ-like methyltransferase
3049	 43.19	0	4071449..4072057	+	202	73670609	-	Mbar_A3160	-	hypothetical protein
3050	 37.62	0	4072121..4072540	+	139	73670610	-	Mbar_A3161	-	hypothetical protein
3051	 35.09	-1	4072576..4072803	+	75	73670611	-	Mbar_A3162	-	hypothetical protein
3052	 38.13	0	4073342..4073800	+	152	73670612	-	Mbar_A3163	-	hypothetical protein
3053	 36.61	-1	4073811..4074146	+	111	73670613	-	Mbar_A3164	-	hypothetical protein
3054	 39.28	0	4074139..4075518	+	459	73670614	-	Mbar_A3165	-	Fe-S oxidoreductase
3055	 33.33	-1	4076414..4076842	+	142	73670615	-	Mbar_A3166	-	hypothetical protein
3056	 39.18	0	4077110..4078324	+	404	73670616	-	Mbar_A3167	-	tRNA nucleotidyltransferase
3057	 35.03	-1	4079233..4079703	-	156	73670617	-	Mbar_A3168	-	hypothetical protein
3058	 37.30	0	4079769..4080323	+	184	73670618	-	Mbar_A3169	-	hypothetical protein
3059	 30.95	-2	4080320..4080445	+	41	73670619	-	Mbar_A3170	-	hypothetical protein
3060	 48.66	+1	4080763..4082406	-	547	73670620	-	Mbar_A3171	-	thermosome subunit
3061	 47.35	+1	4082642..4083340	-	232	73670621	-	Mbar_A3172	-	ribose-5-phosphate isomerase
3062	 46.89	+1	4083448..4084782	-	444	73670622	aspC	Mbar_A3173	-	aspartyl-tRNA synthetase
3063	 44.99	0	4085740..4086408	+	222	73670623	-	Mbar_A3174	-	3',5'-cyclic-nucleotide phosphodiesterase
3064	 46.31	0	4087042..4088451	+	469	73670624	-	Mbar_A3175	-	ammonium transporter
3065	 39.94	0	4088453..4088800	+	115	73670625	-	Mbar_A3176	-	nitrogen regulatory protein P-II
3066	 41.03	0	4088883..4089311	+	142	73670626	-	Mbar_A3177	-	hypothetical protein
3067	 42.03	0	4089621..4090241	-	206	73670627	-	Mbar_A3178	-	xanthine-guanine phosphoribosyltransferase
3068	 43.59	0	4090674..4091570	+	298	73670628	-	Mbar_A3179	-	hypothetical protein
3069	 48.15	+1	4091614..4092504	-	296	73670629	-	Mbar_A3180	-	pyruvate ferredoxin oxidoreductase, beta subunit
3070	 47.36	+1	4093347..4094708	-	453	73670630	-	Mbar_A3181	-	hypothetical protein
3071	 45.52	0	4094771..4095049	-	92	73670631	-	Mbar_A3182	-	hypothetical protein
3072	 39.02	0	4095526..4096035	-	169	73670632	aroK	Mbar_A3183	-	shikimate kinase
3073	 38.38	0	4096475..4096870	-	131	73670633	-	Mbar_A3184	-	hypothetical protein
3074	 41.33	0	4097283..4098020	+	245	73670634	-	Mbar_A3185	-	hypothetical protein
3075	 42.08	0	4098017..4098736	+	239	73670635	-	Mbar_A3186	-	hypothetical protein
3076	 46.25	0	4098916..4099449	-	177	73670636	-	Mbar_A3187	-	tRNA 2'-O-methylase
3077	 46.68	+1	4099508..4101028	-	506	73670637	-	Mbar_A3188	-	thymidine phosphorylase
3078	 41.20	0	4101666..4101881	-	71	73670638	-	Mbar_A3189	-	hypothetical protein
3079	 41.44	0	4102586..4102807	-	73	73670639	-	Mbar_A3190	-	hypothetical protein
3080	 45.13	0	4103863..4105320	+	485	73670640	-	Mbar_A3191	-	cobyric acid synthase
3081	 46.28	0	4106255..4107235	-	326	73670641	-	Mbar_A3192	-	alanine dehydrogenase
3082	 43.25	0	4107435..4108160	+	241	73670642	-	Mbar_A3193	-	hypothetical protein
3083	 45.43	0	4108213..4109262	-	349	73670643	-	Mbar_A3194	-	O-GlcNAc transferase, p110 subunit
3084	 40.00	0	4109674..4110063	-	129	73670644	-	Mbar_A3195	-	hypothetical protein
3085	 43.62	0	4110486..4111292	+	268	73670645	-	Mbar_A3196	-	serine/threonine specific protein phosphatase
3086	 46.13	0	4111550..4112737	-	395	73670646	-	Mbar_A3197	-	O-GlcNAc transferase, p110 subunit
3087	 42.75	0	4113783..4114196	+	137	73670647	fxsA	Mbar_A3198	-	FxsA
3088	 41.70	0	4114429..4115145	-	238	73670648	-	Mbar_A3199	-	hypothetical protein
3089	 38.96	0	4115148..4115609	-	153	73670649	-	Mbar_A3200	-	hypothetical protein
3090	 44.92	0	4116063..4117253	+	396	73670650	-	Mbar_A3201	-	cysteine desulphurase
3091	 47.44	+1	4117319..4117708	+	129	73670651	-	Mbar_A3202	-	nitrogen fixation protein
3092	 43.23	0	4118661..4119650	+	329	73670652	-	Mbar_A3203	-	SSU ribosomal protein S6P modification protein
3093	 42.82	0	4119865..4120212	+	115	73670653	-	Mbar_A3204	-	peptidyl-tRNA hydrolase
3094	 45.86	0	4120339..4121583	+	414	73670654	-	Mbar_A3205	-	hypothetical protein
3095	 47.23	+1	4121622..4122938	+	438	73670655	truD	Mbar_A3206	-	tRNA pseudouridine synthase D
3096	 45.58	0	4123205..4124608	-	467	73670656	-	Mbar_A3207	-	putative transmembrane efflux protein
3097	 41.77	0	4125173..4125931	-	252	73670657	-	Mbar_A3209	-	hypothetical protein
41.74	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.