IslandPathversion 1.0

IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.74 STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2959	 38.07	0	3942175..3942681	+	168	73670519	-	Mbar_A3064	-	hypothetical protein
2960	 40.04	0	3942757..3943785	+	342	73670520	-	Mbar_A3065	-	hypothetical protein
2961	 47.25	+1	3944267..3945559	-	430	73670521	-	Mbar_A3066	-	hypothetical protein
2962	 42.25	0	3946444..3947508	+	354	73670522	-	Mbar_A3067	-	hypothetical protein
2963	 46.35	0	3947840..3948400	+	186	73670523	-	Mbar_A3068	-	hypothetical protein
2964	 46.75	+1	3949458..3949964	+	168	73670524	-	Mbar_A3069	-	hypothetical protein
2965	 45.54	0	3950372..3951682	+	436	73670525	-	Mbar_A3070	-	Na(+)/H(+) antiporter
2966	 41.05	0	3951931..3953031	+	366	73670526	-	Mbar_A3071	-	hypothetical protein
2967	 44.64	0	3953926..3954429	+	167	73670527	-	Mbar_A3072	-	hypothetical protein
2968	 49.43	+1	3954672..3957026	+	784	73670528	-	Mbar_A3073	-	arylsulfatase
2969	 42.11	0	3957089..3957373	+	94	73670529	-	Mbar_A3074	-	hypothetical protein
2970	 40.80	0	3957348..3957548	+	66	73670530	-	Mbar_A3075	-	hypothetical protein
2971	 46.32	0	3958693..3960117	+	474	73670531	-	Mbar_A3077	-	hypothetical protein
2972	 40.80	0	3960266..3960787	+	173	73670532	-	Mbar_A3078	-	Na(+)/H(+) antiporter
2973	 48.67	+1	3961766..3963082	+	438	73670533	-	Mbar_A3080	-	arylsulfatase regulator
2974	 49.03	+1	3963250..3964740	+	496	73670534	-	Mbar_A3081	-	arylsulfatase
2975	 48.67	+1	3965120..3965647	+	175	73670535	-	Mbar_A3082	-	hypothetical protein
2976	 29.97	-2	3967061..3967804	+	247	73670536	-	Mbar_A3083	-	hypothetical protein
2977	 37.44	0	3968249..3968443	-	64	73670537	-	Mbar_A3084	-	hypothetical protein
2978	 44.68	0	3969148..3971421	+	757	73670538	-	Mbar_A3085	-	hypothetical protein
2979	 49.56	+1	3972511..3973428	-	305	73670539	-	Mbar_A3086	-	nonspecific acid phosphatase precursor
2980	 37.50	0	3974545..3974904	+	119	73670540	-	Mbar_A3088	-	hypothetical protein
2981	 29.67	-2	3975078..3975350	+	90	73670541	-	Mbar_A3089	-	putative transposase
2982	 36.27	-1	3975881..3976969	+	362	73670542	-	Mbar_A3090	-	hypothetical protein
2983	 42.07	0	3977082..3977573	+	163	73670543	-	Mbar_A3091	-	hypothetical protein
2984	 37.55	0	3978182..3978655	+	157	73670544	-	Mbar_A3092	-	multiple antibiotic resistance protein
2985	 36.88	-1	3979265..3979405	-	46	73670545	-	Mbar_A3093	-	hypothetical protein
2986	 47.01	+1	3979729..3982140	-	803	73670546	-	Mbar_A3094	-	phosphoenolpyruvate synthase
2987	 42.49	0	3982588..3983472	-	294	73670547	-	Mbar_A3095	-	integral membrane protein
2988	 41.41	0	3983821..3984018	-	65	73670548	-	Mbar_A3096	-	hypothetical protein
2989	 40.26	0	3985187..3986269	-	360	73670549	-	Mbar_A3097	-	hypothetical protein
2990	 46.91	+1	3986602..3987507	-	301	73670550	-	Mbar_A3098	-	H(+)-transporting ATP synthase, subunit gamma
2991	 46.27	0	3987504..3989219	-	571	73670551	-	Mbar_A3099	-	F0F1 ATP synthase subunit alpha
2992	 42.91	0	3989233..3990474	-	413	73670552	-	Mbar_A3100	-	hypothetical protein
2993	 49.64	+1	3990495..3990770	-	91	73670553	-	Mbar_A3101	-	F0F1 ATP synthase subunit C
2994	 44.49	0	3990826..3991515	-	229	73670554	-	Mbar_A3102	-	F0F1 ATP synthase subunit A
2995	 44.13	0	3991505..3991819	-	104	73670555	-	Mbar_A3103	-	hypothetical protein
2996	 47.20	+1	3991812..3992150	-	112	73670556	-	Mbar_A3104	-	H(+)-transporting ATP synthase, gene 1
2997	 45.24	0	3992143..3992562	-	139	73670557	-	Mbar_A3105	-	F0F1 ATP synthase subunit epsilon
2998	 49.54	+1	3992559..3993983	-	474	73670558	-	Mbar_A3106	-	F0F1 ATP synthase subunit beta
2999	 33.78	-1	3994472..3994921	+	149	73670559	-	Mbar_A3107	-	hypothetical protein
3000	 41.38	0	3996007..3996714	+	235	73670560	-	Mbar_A3108	-	hypothetical protein
3001	 41.14	0	3996719..3997576	+	285	73670561	-	Mbar_A3109	-	response regulator receiver
3002	 41.18	0	3997783..3998508	-	241	73670562	-	Mbar_A3110	-	hypothetical protein
3003	 36.91	-1	3998908..3999633	-	241	73670563	-	Mbar_A3111	-	hypothetical protein
3004	 40.86	0	4001027..4001704	-	225	73670564	-	Mbar_A3112	-	potassium channel protein
3005	 41.95	0	4001968..4003011	-	347	73670565	-	Mbar_A3113	-	potassium channel protein
3006	 45.80	0	4003390..4005186	-	598	73670566	-	Mbar_A3114	-	sterol-regulatory element-binding protein intramembrane protease
3007	 41.82	0	4005709..4006026	+	105	73670567	-	Mbar_A3115	-	divalent cation tolerance protein
3008	 43.93	0	4007734..4008318	+	194	73670568	-	Mbar_A3116	-	hypothetical protein
3009	 45.50	0	4008668..4009078	+	136	73670569	-	Mbar_A3117	-	hypothetical protein
3010	 34.20	-1	4009182..4009529	-	115	73670570	-	Mbar_A3118	-	hypothetical protein
3011	 35.57	-1	4009517..4011169	-	550	73670571	-	Mbar_A3119	-	CRISPR-associated Cas1/Cas4 family protein
3012	 41.99	0	4011305..4012945	-	546	73670572	-	Mbar_A3120	-	hypothetical protein
3013	 40.10	0	4012950..4013999	-	349	73670573	-	Mbar_A3121	-	hypothetical protein
3014	 38.72	0	4014027..4016255	-	742	73670574	-	Mbar_A3122	-	hypothetical protein
3015	 39.65	0	4016248..4018779	-	843	73670575	-	Mbar_A3123	-	hypothetical protein
3016	 46.52	0	4020444..4020845	-	133	73670576	-	Mbar_A3125	-	phosphoribosylaminoimidazole carboxylase
3017	 40.28	0	4020866..4021153	-	95	73670577	-	Mbar_A3126	-	chorismate mutase
3018	 44.29	0	4021507..4022373	-	288	73670578	-	Mbar_A3127	-	shikimate kinase
3019	 41.20	0	4022691..4023605	+	304	73670579	-	Mbar_A3128	-	hypothetical protein
3020	 44.39	0	4024469..4025110	+	213	73670580	-	Mbar_A3129	-	GTP-binding protein
3021	 40.00	0	4025116..4025475	+	119	73670581	-	Mbar_A3130	-	hypothetical protein
3022	 38.79	0	4025490..4026002	+	170	73670582	-	Mbar_A3131	-	hypothetical protein
3023	 41.63	0	4026261..4026875	+	204	73670583	-	Mbar_A3132	-	hexulose-6-phosphate isomerase
3024	 47.80	+1	4026948..4028060	+	370	73670584	-	Mbar_A3133	-	aminotransferase
3025	 31.19	-2	4028765..4029184	-	139	73670585	-	Mbar_A3134	-	hypothetical protein
3026	 45.26	0	4030154..4030975	+	273	73670586	-	Mbar_A3135	-	cytochrome c-type biogenesis protein
3027	 37.00	0	4031590..4031916	-	108	73670587	-	Mbar_A3136	-	hypothetical protein
3028	 43.01	0	4033202..4033780	-	192	73670588	-	Mbar_A3137	-	hypothetical protein
3029	 40.23	0	4034938..4037331	+	797	73670589	-	Mbar_A3138	-	glycosyltransferase (group I)
3030	 45.89	0	4037612..4038646	+	344	73670590	-	Mbar_A3139	-	hypothetical protein
3031	 41.68	0	4038779..4040155	+	458	73670591	-	Mbar_A3140	-	mannose-6-phosphate isomerase, bifunctional enzyme
3032	 43.77	0	4040348..4040692	-	114	73670592	-	Mbar_A3141	-	hypothetical protein
3033	 48.68	+1	4041205..4041960	-	251	73670593	-	Mbar_A3142	-	metal dependent hydrolase
3034	 39.76	0	4042517..4044976	-	819	73670594	-	Mbar_A3143	-	cell surface protein
3035	 39.71	0	4045359..4048274	-	971	73670595	-	Mbar_A3144	-	hypothetical protein
3036	 38.56	0	4049113..4052403	-	1096	73670596	-	Mbar_A3145	-	hypothetical protein
3037	 34.97	-1	4052907..4053395	-	162	73670597	-	Mbar_A3146	-	MarR family protein
3038	 39.96	0	4054067..4054519	-	150	73670598	-	Mbar_A3147	-	universal stress protein
3039	 41.50	0	4054645..4055709	-	354	73670599	-	Mbar_A3148	-	hypothetical protein
3040	 39.67	0	4055702..4056838	-	378	73670600	-	Mbar_A3149	-	hypothetical protein
3041	 42.02	0	4056835..4059102	-	755	73670601	-	Mbar_A3150	-	RND superfamily protein
3042	 41.24	0	4060508..4060798	+	96	73670602	-	Mbar_A3151	-	hypothetical protein
3043	 40.74	0	4061828..4063123	+	431	73670603	-	Mbar_A3152	-	hypothetical protein
3044	 40.70	0	4063163..4065076	+	637	73670604	-	Mbar_A3153	-	hypothetical protein
3045	 41.72	0	4065141..4067036	+	631	73670605	-	Mbar_A3154	-	hypothetical protein
3046	 44.79	0	4067244..4067732	-	162	73670606	-	Mbar_A3155	-	hypothetical protein
3047	 41.33	0	4068023..4068397	+	124	73670607	-	Mbar_A3156	-	hypothetical protein
3048	 45.01	0	4070500..4071210	+	236	73670608	-	Mbar_A3159	-	FtsJ-like methyltransferase
3049	 43.19	0	4071449..4072057	+	202	73670609	-	Mbar_A3160	-	hypothetical protein
3050	 37.62	0	4072121..4072540	+	139	73670610	-	Mbar_A3161	-	hypothetical protein
3051	 35.09	-1	4072576..4072803	+	75	73670611	-	Mbar_A3162	-	hypothetical protein
3052	 38.13	0	4073342..4073800	+	152	73670612	-	Mbar_A3163	-	hypothetical protein
3053	 36.61	-1	4073811..4074146	+	111	73670613	-	Mbar_A3164	-	hypothetical protein
3054	 39.28	0	4074139..4075518	+	459	73670614	-	Mbar_A3165	-	Fe-S oxidoreductase
3055	 33.33	-1	4076414..4076842	+	142	73670615	-	Mbar_A3166	-	hypothetical protein
3056	 39.18	0	4077110..4078324	+	404	73670616	-	Mbar_A3167	-	tRNA nucleotidyltransferase
3057	 35.03	-1	4079233..4079703	-	156	73670617	-	Mbar_A3168	-	hypothetical protein
3058	 37.30	0	4079769..4080323	+	184	73670618	-	Mbar_A3169	-	hypothetical protein
41.74	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.