IslandPathversion 1.0

IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.74 STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2919	 44.71	0	3888912..3889658	+	248	73670479	-	Mbar_A3020	-	carbonic anhydrase
2920	 37.80	0	3889986..3891485	+	499	73670480	-	Mbar_A3021	-	hypothetical protein
2921	 41.87	0	3891935..3893140	-	401	73670481	-	Mbar_A3022	-	nicotinate phosphoribosyltransferase
2922	 47.34	+1	3894948..3896132	+	394	73670482	-	Mbar_A3023	-	cystathionine gamma-synthase
2923	 42.51	0	3896480..3896980	+	166	73670483	-	Mbar_A3024	-	PfpI peptidase. cysteine peptidase. MEROPS family C56
2924	 30.80	-2	3897074..3897349	-	91	73670484	-	Mbar_A3025	-	hypothetical protein
2925	 35.04	-1	3898369..3898779	+	136	73670485	-	Mbar_A3026	-	hypothetical protein
2926	 38.10	0	3899379..3899777	+	132	73670486	-	Mbar_A3027	-	hypothetical protein
2927	 43.89	0	3900571..3900750	+	59	73670487	-	Mbar_A3028	-	hypothetical protein
2928	 34.34	-1	3900753..3900950	+	65	73670488	-	Mbar_A3029	-	hypothetical protein
2929	 45.64	0	3901690..3902079	+	129	73670489	-	Mbar_A3031	-	glyoxalase
2930	 39.70	0	3904063..3904329	+	88	73670490	-	Mbar_A3032	-	hypothetical protein
2931	 33.16	-1	3904623..3905210	-	195	73670491	-	Mbar_A3033	-	hypothetical protein
2932	 39.14	0	3905841..3906890	+	349	73670492	-	Mbar_A3035	-	hypothetical protein
2933	 40.62	0	3908084..3911227	-	1047	73670493	-	Mbar_A3036	-	sensory transduction histidine kinase
2934	 41.14	0	3911554..3915423	-	1289	73670494	-	Mbar_A3037	-	hypothetical protein
2935	 41.89	0	3915974..3916417	+	147	73670495	-	Mbar_A3038	-	hypothetical protein
2936	 45.30	0	3917315..3918835	+	506	73670496	-	Mbar_A3039	-	aminoacyl-histidine dipeptidase
2937	 43.16	0	3918973..3919725	-	250	73670497	-	Mbar_A3040	-	hypothetical protein
2938	 37.74	0	3921121..3921483	+	120	73670498	-	Mbar_A3042	-	hypothetical protein
2939	 30.95	-2	3921726..3921893	-	55	73670499	-	Mbar_A3043	-	hypothetical protein
2940	 47.62	+1	3922503..3922922	-	139	73670500	-	Mbar_A3044	-	hypothetical protein
2941	 47.98	+1	3923907..3925190	-	427	73670501	-	Mbar_A3045	-	NAD-dependent malic enzyme
2942	 44.44	0	3925674..3926069	+	131	73670502	-	Mbar_A3046	-	JAMM-like protein. metallo peptidase. MEROPS family M67B
2943	 46.55	+1	3926558..3926731	+	57	73670503	-	Mbar_A3047	-	hypothetical protein
2944	 27.06	-2	3927246..3927500	-	84	73670504	-	Mbar_A3048	-	transposase
2945	 35.94	-1	3927537..3928649	+	370	73670505	-	Mbar_A3049	-	transposase
2946	 42.86	0	3928903..3929154	-	83	73670506	-	Mbar_A3050	-	hypothetical protein
2947	 44.73	0	3929317..3929790	-	157	73670507	-	Mbar_A3051	-	Imp4 family protein
2948	 35.81	-1	3929868..3930716	-	282	73670508	-	Mbar_A3052	-	ArsR family transcriptional regulator
2949	 43.27	0	3931389..3932042	+	217	73670509	-	Mbar_A3053	-	hypothetical protein
2950	 47.24	+1	3933686..3934210	+	174	73670510	-	Mbar_A3054	-	putative NTPase
2951	 43.37	0	3934453..3935229	-	258	73670511	-	Mbar_A3055	-	GTP-binding protein
2952	 41.48	0	3935545..3935814	-	89	73670512	-	Mbar_A3056	-	hypothetical protein
2953	 44.73	0	3936014..3936487	+	157	73670513	-	Mbar_A3057	-	dCMP deaminase
2954	 43.96	0	3937068..3937274	-	68	73670514	-	Mbar_A3059	-	hypothetical protein
2955	 43.66	0	3937543..3937755	-	70	73670515	-	Mbar_A3060	-	hypothetical protein
2956	 43.01	0	3938412..3939692	+	426	73670516	-	Mbar_A3061	-	hypothetical protein
2957	 44.30	0	3939875..3941050	+	391	73670517	-	Mbar_A3062	-	hypothetical protein
2958	 34.48	-1	3941109..3941978	-	289	73670518	-	Mbar_A3063	-	hypothetical protein
2959	 38.07	0	3942175..3942681	+	168	73670519	-	Mbar_A3064	-	hypothetical protein
2960	 40.04	0	3942757..3943785	+	342	73670520	-	Mbar_A3065	-	hypothetical protein
2961	 47.25	+1	3944267..3945559	-	430	73670521	-	Mbar_A3066	-	hypothetical protein
2962	 42.25	0	3946444..3947508	+	354	73670522	-	Mbar_A3067	-	hypothetical protein
2963	 46.35	0	3947840..3948400	+	186	73670523	-	Mbar_A3068	-	hypothetical protein
2964	 46.75	+1	3949458..3949964	+	168	73670524	-	Mbar_A3069	-	hypothetical protein
2965	 45.54	0	3950372..3951682	+	436	73670525	-	Mbar_A3070	-	Na(+)/H(+) antiporter
2966	 41.05	0	3951931..3953031	+	366	73670526	-	Mbar_A3071	-	hypothetical protein
2967	 44.64	0	3953926..3954429	+	167	73670527	-	Mbar_A3072	-	hypothetical protein
2968	 49.43	+1	3954672..3957026	+	784	73670528	-	Mbar_A3073	-	arylsulfatase
2969	 42.11	0	3957089..3957373	+	94	73670529	-	Mbar_A3074	-	hypothetical protein
2970	 40.80	0	3957348..3957548	+	66	73670530	-	Mbar_A3075	-	hypothetical protein
2971	 46.32	0	3958693..3960117	+	474	73670531	-	Mbar_A3077	-	hypothetical protein
2972	 40.80	0	3960266..3960787	+	173	73670532	-	Mbar_A3078	-	Na(+)/H(+) antiporter
2973	 48.67	+1	3961766..3963082	+	438	73670533	-	Mbar_A3080	-	arylsulfatase regulator
2974	 49.03	+1	3963250..3964740	+	496	73670534	-	Mbar_A3081	-	arylsulfatase
2975	 48.67	+1	3965120..3965647	+	175	73670535	-	Mbar_A3082	-	hypothetical protein
2976	 29.97	-2	3967061..3967804	+	247	73670536	-	Mbar_A3083	-	hypothetical protein
2977	 37.44	0	3968249..3968443	-	64	73670537	-	Mbar_A3084	-	hypothetical protein
2978	 44.68	0	3969148..3971421	+	757	73670538	-	Mbar_A3085	-	hypothetical protein
2979	 49.56	+1	3972511..3973428	-	305	73670539	-	Mbar_A3086	-	nonspecific acid phosphatase precursor
2980	 37.50	0	3974545..3974904	+	119	73670540	-	Mbar_A3088	-	hypothetical protein
2981	 29.67	-2	3975078..3975350	+	90	73670541	-	Mbar_A3089	-	putative transposase
2982	 36.27	-1	3975881..3976969	+	362	73670542	-	Mbar_A3090	-	hypothetical protein
2983	 42.07	0	3977082..3977573	+	163	73670543	-	Mbar_A3091	-	hypothetical protein
2984	 37.55	0	3978182..3978655	+	157	73670544	-	Mbar_A3092	-	multiple antibiotic resistance protein
2985	 36.88	-1	3979265..3979405	-	46	73670545	-	Mbar_A3093	-	hypothetical protein
2986	 47.01	+1	3979729..3982140	-	803	73670546	-	Mbar_A3094	-	phosphoenolpyruvate synthase
2987	 42.49	0	3982588..3983472	-	294	73670547	-	Mbar_A3095	-	integral membrane protein
2988	 41.41	0	3983821..3984018	-	65	73670548	-	Mbar_A3096	-	hypothetical protein
2989	 40.26	0	3985187..3986269	-	360	73670549	-	Mbar_A3097	-	hypothetical protein
2990	 46.91	+1	3986602..3987507	-	301	73670550	-	Mbar_A3098	-	H(+)-transporting ATP synthase, subunit gamma
2991	 46.27	0	3987504..3989219	-	571	73670551	-	Mbar_A3099	-	F0F1 ATP synthase subunit alpha
2992	 42.91	0	3989233..3990474	-	413	73670552	-	Mbar_A3100	-	hypothetical protein
2993	 49.64	+1	3990495..3990770	-	91	73670553	-	Mbar_A3101	-	F0F1 ATP synthase subunit C
2994	 44.49	0	3990826..3991515	-	229	73670554	-	Mbar_A3102	-	F0F1 ATP synthase subunit A
2995	 44.13	0	3991505..3991819	-	104	73670555	-	Mbar_A3103	-	hypothetical protein
2996	 47.20	+1	3991812..3992150	-	112	73670556	-	Mbar_A3104	-	H(+)-transporting ATP synthase, gene 1
2997	 45.24	0	3992143..3992562	-	139	73670557	-	Mbar_A3105	-	F0F1 ATP synthase subunit epsilon
2998	 49.54	+1	3992559..3993983	-	474	73670558	-	Mbar_A3106	-	F0F1 ATP synthase subunit beta
2999	 33.78	-1	3994472..3994921	+	149	73670559	-	Mbar_A3107	-	hypothetical protein
3000	 41.38	0	3996007..3996714	+	235	73670560	-	Mbar_A3108	-	hypothetical protein
3001	 41.14	0	3996719..3997576	+	285	73670561	-	Mbar_A3109	-	response regulator receiver
3002	 41.18	0	3997783..3998508	-	241	73670562	-	Mbar_A3110	-	hypothetical protein
3003	 36.91	-1	3998908..3999633	-	241	73670563	-	Mbar_A3111	-	hypothetical protein
3004	 40.86	0	4001027..4001704	-	225	73670564	-	Mbar_A3112	-	potassium channel protein
3005	 41.95	0	4001968..4003011	-	347	73670565	-	Mbar_A3113	-	potassium channel protein
3006	 45.80	0	4003390..4005186	-	598	73670566	-	Mbar_A3114	-	sterol-regulatory element-binding protein intramembrane protease
3007	 41.82	0	4005709..4006026	+	105	73670567	-	Mbar_A3115	-	divalent cation tolerance protein
3008	 43.93	0	4007734..4008318	+	194	73670568	-	Mbar_A3116	-	hypothetical protein
3009	 45.50	0	4008668..4009078	+	136	73670569	-	Mbar_A3117	-	hypothetical protein
3010	 34.20	-1	4009182..4009529	-	115	73670570	-	Mbar_A3118	-	hypothetical protein
3011	 35.57	-1	4009517..4011169	-	550	73670571	-	Mbar_A3119	-	CRISPR-associated Cas1/Cas4 family protein
3012	 41.99	0	4011305..4012945	-	546	73670572	-	Mbar_A3120	-	hypothetical protein
3013	 40.10	0	4012950..4013999	-	349	73670573	-	Mbar_A3121	-	hypothetical protein
3014	 38.72	0	4014027..4016255	-	742	73670574	-	Mbar_A3122	-	hypothetical protein
3015	 39.65	0	4016248..4018779	-	843	73670575	-	Mbar_A3123	-	hypothetical protein
3016	 46.52	0	4020444..4020845	-	133	73670576	-	Mbar_A3125	-	phosphoribosylaminoimidazole carboxylase
3017	 40.28	0	4020866..4021153	-	95	73670577	-	Mbar_A3126	-	chorismate mutase
3018	 44.29	0	4021507..4022373	-	288	73670578	-	Mbar_A3127	-	shikimate kinase
41.74	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.