IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 41.74   STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2899	 42.86	0	3863680..3864120	+	146	73670459	-	Mbar_A3000	-	hypothetical protein
2900	 42.28	0	3864482..3865129	-	215	73670460	-	Mbar_A3001	-	hypothetical protein
2901	 38.16	0	3865594..3866298	+	234	73670461	-	Mbar_A3002	-	hypothetical protein
2902	 41.82	0	3866512..3866676	-	54	73670462	-	Mbar_A3003	-	putative cytosine deaminase
2903	 42.72	0	3866817..3867221	+	134	73670463	-	Mbar_A3004	-	hypothetical protein
2904	 37.08	0	3867315..3867554	+	79	73670464	-	Mbar_A3005	-	hypothetical protein
2905	 43.27	0	3868056..3868910	+	284	73670465	-	Mbar_A3006	-	hypothetical protein
2906	 39.04	0	3869109..3871298	+	729	73670466	-	Mbar_A3007	-	two component system histidine kinase
2907	 35.12	-1	3871445..3872116	-	223	73670467	-	Mbar_A3008	-	hypothetical protein
2908	 43.36	0	3872789..3873466	-	225	73670468	-	Mbar_A3009	-	hypothetical protein
2909	 46.10	0	3874245..3875489	-	414	73670469	-	Mbar_A3010	-	ABC transporter, permease protein
2910	 43.20	0	3875661..3877049	-	462	73670470	-	Mbar_A3011	-	hypothetical protein
2911	 42.71	0	3877059..3878018	-	319	73670471	-	Mbar_A3012	-	ABC transporter, ATP-binding protein
2912	 33.33	-1	3878647..3878988	-	113	73670472	-	Mbar_A3013	-	hypothetical protein
2913	 36.19	-1	3879521..3880045	+	174	73670473	-	Mbar_A3014	-	hypothetical protein
2914	 47.91	+1	3880484..3881272	-	262	73670474	-	Mbar_A3015	-	hypothetical protein
2915	 40.07	0	3881729..3882010	-	93	73670475	-	Mbar_A3016	-	iron-sulfur flavoprotein
2916	 41.99	0	3883059..3884513	+	484	73670476	-	Mbar_A3017	-	hypothetical protein
2917	 42.34	0	3884753..3885574	+	273	73670477	-	Mbar_A3018	-	hypothetical protein
2918	 44.85	0	3886117..3887757	-	546	73670478	-	Mbar_A3019	-	phycocyanin alpha-subunit
2919	 44.71	0	3888912..3889658	+	248	73670479	-	Mbar_A3020	-	carbonic anhydrase
2920	 37.80	0	3889986..3891485	+	499	73670480	-	Mbar_A3021	-	hypothetical protein
2921	 41.87	0	3891935..3893140	-	401	73670481	-	Mbar_A3022	-	nicotinate phosphoribosyltransferase
2922	 47.34	+1	3894948..3896132	+	394	73670482	-	Mbar_A3023	-	cystathionine gamma-synthase
2923	 42.51	0	3896480..3896980	+	166	73670483	-	Mbar_A3024	-	PfpI peptidase. cysteine peptidase. MEROPS family C56
2924	 30.80	-2	3897074..3897349	-	91	73670484	-	Mbar_A3025	-	hypothetical protein
2925	 35.04	-1	3898369..3898779	+	136	73670485	-	Mbar_A3026	-	hypothetical protein
2926	 38.10	0	3899379..3899777	+	132	73670486	-	Mbar_A3027	-	hypothetical protein
2927	 43.89	0	3900571..3900750	+	59	73670487	-	Mbar_A3028	-	hypothetical protein
2928	 34.34	-1	3900753..3900950	+	65	73670488	-	Mbar_A3029	-	hypothetical protein
2929	 45.64	0	3901690..3902079	+	129