IslandPathversion 1.0

IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.74 STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2859	 43.54	0	3805718..3808459	+	913	73670419	-	Mbar_A2959	-	hypothetical protein
2860	 45.27	0	3808977..3809621	+	214	73670420	-	Mbar_A2960	-	hypothetical protein
2861	 45.47	0	3809811..3810527	+	238	73670421	-	Mbar_A2961	-	phosphoglycerate mutase
2862	 47.12	+1	3810706..3811329	-	207	73670422	-	Mbar_A2962	-	hypothetical protein
2863	 41.52	0	3811474..3811815	-	113	73670423	-	Mbar_A2963	-	hypothetical protein
2864	 43.54	0	3812227..3812373	+	48	73670424	-	Mbar_A2964	-	putative ferredoxin
2865	 43.54	0	3812559..3813332	-	257	73670425	-	Mbar_A2965	-	ArsR family transcriptional regulator
2866	 48.26	+1	3813642..3813842	+	66	73670426	-	Mbar_A2966	-	hypothetical protein
2867	 48.86	+1	3814122..3814559	+	145	73670427	-	Mbar_A2967	-	hypothetical protein
2868	 46.15	0	3814753..3816234	-	493	73670428	-	Mbar_A2968	-	kinesin light chain
2869	 42.77	0	3817126..3817962	+	278	73670429	-	Mbar_A2969	-	hypothetical protein
2870	 36.90	-1	3818838..3819005	-	55	73670430	-	Mbar_A2970	-	hypothetical protein
2871	 35.73	-1	3819579..3821411	+	610	73670431	-	Mbar_A2971	-	hypothetical protein
2872	 38.79	0	3821595..3822125	+	176	73670432	-	Mbar_A2972	-	hypothetical protein
2873	 35.31	-1	3822466..3824082	+	538	73670433	-	Mbar_A2973	-	polysaccharide biosynthesis protein
2874	 42.97	0	3824308..3824919	+	203	73670434	-	Mbar_A2974	-	hypothetical protein
2875	 51.69	+2	3825987..3827882	+	631	73670435	-	Mbar_A2975	-	hypothetical protein
2876	 39.84	0	3828392..3829144	+	250	73670436	-	Mbar_A2976	-	hypothetical protein
2877	 38.80	0	3830586..3832268	-	560	73670437	-	Mbar_A2977	-	hypothetical protein
2878	 36.24	-1	3832324..3834009	-	561	73670438	-	Mbar_A2978	-	hypothetical protein
2879	 35.24	-1	3834672..3835721	-	349	73670439	-	Mbar_A2979	-	putative histidine decarboxylase
2880	 43.07	0	3837180..3839048	-	622	73670440	-	Mbar_A2980	-	thimet oligopeptidase
2881	 41.36	0	3839469..3840365	-	298	73670441	-	Mbar_A2981	-	hypothetical protein
2882	 41.94	0	3840368..3841111	-	247	73670442	-	Mbar_A2982	-	hypothetical protein
2883	 41.03	0	3841568..3842632	-	354	73670443	-	Mbar_A2983	-	magnesium and cobalt transport protein CorA
2884	 39.85	0	3842953..3843873	+	306	73670444	-	Mbar_A2984	-	hypothetical protein
2885	 41.57	0	3844158..3845213	+	351	73670445	-	Mbar_A2985	-	hypothetical protein
2886	 47.40	+1	3845766..3847073	-	435	73670446	-	Mbar_A2986	-	phenylacetate-CoA ligase
2887	 49.83	+1	3847099..3847698	-	199	73670447	-	Mbar_A2987	-	indolepyruvate oxidoreductase subunit B
2888	 48.90	+1	3847695..3849602	-	635	73670448	-	Mbar_A2988	-	indolepyruvate ferredoxin oxidoreductase, subunit alpha
2889	 42.75	0	3850000..3850689	-	229	73670449	-	Mbar_A2989	-	hypothetical protein
2890	 30.83	-2	3851100..3851339	+	79	73670450	-	Mbar_A2990	-	hypothetical protein
2891	 32.86	-1	3851496..3851921	-	141	73670451	-	Mbar_A2991	-	hypothetical protein
2892	 34.31	-1	3851915..3852118	-	67	73670452	-	Mbar_A2992	-	hypothetical protein
2893	 42.50	0	3853739..3854992	-	417	73670453	-	Mbar_A2994	-	hypothetical protein
2894	 44.25	0	3855174..3855686	-	170	73670454	-	Mbar_A2995	-	hypothetical protein
2895	 43.04	0	3856100..3857500	-	466	73670455	-	Mbar_A2996	-	hypothetical protein
2896	 45.62	0	3858085..3859761	-	558	73670456	-	Mbar_A2997	-	glycogen phosphorylase
2897	 41.39	0	3860196..3861176	+	326	73670457	-	Mbar_A2998	-	hypothetical protein
2898	 42.83	0	3862206..3863195	+	329	73670458	-	Mbar_A2999	-	hypothetical protein
2899	 42.86	0	3863680..3864120	+	146	73670459	-	Mbar_A3000	-	hypothetical protein
2900	 42.28	0	3864482..3865129	-	215	73670460	-	Mbar_A3001	-	hypothetical protein
2901	 38.16	0	3865594..3866298	+	234	73670461	-	Mbar_A3002	-	hypothetical protein
2902	 41.82	0	3866512..3866676	-	54	73670462	-	Mbar_A3003	-	putative cytosine deaminase
2903	 42.72	0	3866817..3867221	+	134	73670463	-	Mbar_A3004	-	hypothetical protein
2904	 37.08	0	3867315..3867554	+	79	73670464	-	Mbar_A3005	-	hypothetical protein
2905	 43.27	0	3868056..3868910	+	284	73670465	-	Mbar_A3006	-	hypothetical protein
2906	 39.04	0	3869109..3871298	+	729	73670466	-	Mbar_A3007	-	two component system histidine kinase
2907	 35.12	-1	3871445..3872116	-	223	73670467	-	Mbar_A3008	-	hypothetical protein
2908	 43.36	0	3872789..3873466	-	225	73670468	-	Mbar_A3009	-	hypothetical protein
2909	 46.10	0	3874245..3875489	-	414	73670469	-	Mbar_A3010	-	ABC transporter, permease protein
2910	 43.20	0	3875661..3877049	-	462	73670470	-	Mbar_A3011	-	hypothetical protein
2911	 42.71	0	3877059..3878018	-	319	73670471	-	Mbar_A3012	-	ABC transporter, ATP-binding protein
2912	 33.33	-1	3878647..3878988	-	113	73670472	-	Mbar_A3013	-	hypothetical protein
2913	 36.19	-1	3879521..3880045	+	174	73670473	-	Mbar_A3014	-	hypothetical protein
2914	 47.91	+1	3880484..3881272	-	262	73670474	-	Mbar_A3015	-	hypothetical protein
2915	 40.07	0	3881729..3882010	-	93	73670475	-	Mbar_A3016	-	iron-sulfur flavoprotein
2916	 41.99	0	3883059..3884513	+	484	73670476	-	Mbar_A3017	-	hypothetical protein
2917	 42.34	0	3884753..3885574	+	273	73670477	-	Mbar_A3018	-	hypothetical protein
2918	 44.85	0	3886117..3887757	-	546	73670478	-	Mbar_A3019	-	phycocyanin alpha-subunit
2919	 44.71	0	3888912..3889658	+	248	73670479	-	Mbar_A3020	-	carbonic anhydrase
2920	 37.80	0	3889986..3891485	+	499	73670480	-	Mbar_A3021	-	hypothetical protein
2921	 41.87	0	3891935..3893140	-	401	73670481	-	Mbar_A3022	-	nicotinate phosphoribosyltransferase
2922	 47.34	+1	3894948..3896132	+	394	73670482	-	Mbar_A3023	-	cystathionine gamma-synthase
2923	 42.51	0	3896480..3896980	+	166	73670483	-	Mbar_A3024	-	PfpI peptidase. cysteine peptidase. MEROPS family C56
2924	 30.80	-2	3897074..3897349	-	91	73670484	-	Mbar_A3025	-	hypothetical protein
2925	 35.04	-1	3898369..3898779	+	136	73670485	-	Mbar_A3026	-	hypothetical protein
2926	 38.10	0	3899379..3899777	+	132	73670486	-	Mbar_A3027	-	hypothetical protein
2927	 43.89	0	3900571..3900750	+	59	73670487	-	Mbar_A3028	-	hypothetical protein
2928	 34.34	-1	3900753..3900950	+	65	73670488	-	Mbar_A3029	-	hypothetical protein
2929	 45.64	0	3901690..3902079	+	129	73670489	-	Mbar_A3031	-	glyoxalase
2930	 39.70	0	3904063..3904329	+	88	73670490	-	Mbar_A3032	-	hypothetical protein
2931	 33.16	-1	3904623..3905210	-	195	73670491	-	Mbar_A3033	-	hypothetical protein
2932	 39.14	0	3905841..3906890	+	349	73670492	-	Mbar_A3035	-	hypothetical protein
2933	 40.62	0	3908084..3911227	-	1047	73670493	-	Mbar_A3036	-	sensory transduction histidine kinase
2934	 41.14	0	3911554..3915423	-	1289	73670494	-	Mbar_A3037	-	hypothetical protein
2935	 41.89	0	3915974..3916417	+	147	73670495	-	Mbar_A3038	-	hypothetical protein
2936	 45.30	0	3917315..3918835	+	506	73670496	-	Mbar_A3039	-	aminoacyl-histidine dipeptidase
2937	 43.16	0	3918973..3919725	-	250	73670497	-	Mbar_A3040	-	hypothetical protein
2938	 37.74	0	3921121..3921483	+	120	73670498	-	Mbar_A3042	-	hypothetical protein
2939	 30.95	-2	3921726..3921893	-	55	73670499	-	Mbar_A3043	-	hypothetical protein
2940	 47.62	+1	3922503..3922922	-	139	73670500	-	Mbar_A3044	-	hypothetical protein
2941	 47.98	+1	3923907..3925190	-	427	73670501	-	Mbar_A3045	-	NAD-dependent malic enzyme
2942	 44.44	0	3925674..3926069	+	131	73670502	-	Mbar_A3046	-	JAMM-like protein. metallo peptidase. MEROPS family M67B
2943	 46.55	+1	3926558..3926731	+	57	73670503	-	Mbar_A3047	-	hypothetical protein
2944	 27.06	-2	3927246..3927500	-	84	73670504	-	Mbar_A3048	-	transposase
2945	 35.94	-1	3927537..3928649	+	370	73670505	-	Mbar_A3049	-	transposase
2946	 42.86	0	3928903..3929154	-	83	73670506	-	Mbar_A3050	-	hypothetical protein
2947	 44.73	0	3929317..3929790	-	157	73670507	-	Mbar_A3051	-	Imp4 family protein
2948	 35.81	-1	3929868..3930716	-	282	73670508	-	Mbar_A3052	-	ArsR family transcriptional regulator
2949	 43.27	0	3931389..3932042	+	217	73670509	-	Mbar_A3053	-	hypothetical protein
2950	 47.24	+1	3933686..3934210	+	174	73670510	-	Mbar_A3054	-	putative NTPase
2951	 43.37	0	3934453..3935229	-	258	73670511	-	Mbar_A3055	-	GTP-binding protein
2952	 41.48	0	3935545..3935814	-	89	73670512	-	Mbar_A3056	-	hypothetical protein
2953	 44.73	0	3936014..3936487	+	157	73670513	-	Mbar_A3057	-	dCMP deaminase
2954	 43.96	0	3937068..3937274	-	68	73670514	-	Mbar_A3059	-	hypothetical protein
2955	 43.66	0	3937543..3937755	-	70	73670515	-	Mbar_A3060	-	hypothetical protein
2956	 43.01	0	3938412..3939692	+	426	73670516	-	Mbar_A3061	-	hypothetical protein
2957	 44.30	0	3939875..3941050	+	391	73670517	-	Mbar_A3062	-	hypothetical protein
2958	 34.48	-1	3941109..3941978	-	289	73670518	-	Mbar_A3063	-	hypothetical protein
41.74	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.