IslandPathversion 1.0

IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.74 STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2815	 39.93	0	3732945..3733247	+	100	73670375	-	Mbar_A2915	-	alpha-acetolactate decarboxylase
2816	 40.80	0	3733237..3733611	+	124	73670376	-	Mbar_A2916	-	acetolactate decarboxylase
2817	 41.79	0	3733831..3735414	-	527	73670377	-	Mbar_A2917	-	hypothetical protein
2818	 37.63	0	3736460..3738835	-	791	73670378	-	Mbar_A2918	-	hypothetical protein
2819	 39.33	0	3740730..3740996	+	88	73670379	-	Mbar_A2919	-	hypothetical protein
2820	 39.36	0	3741609..3741890	+	93	73670380	-	Mbar_A2920	-	hypothetical protein
2821	 45.38	0	3742527..3742991	+	154	73670381	-	Mbar_A2921	-	formylmethanofuran dehydrogenase, subunit G
2822	 43.75	0	3743002..3744249	+	415	73670382	-	Mbar_A2922	-	formylmethanofuran dehydrogenase, subunit B
2823	 42.61	0	3744249..3744647	+	132	73670383	-	Mbar_A2923	-	formylmethanofuran dehydrogenase, subunit D
2824	 38.19	0	3744907..3745194	+	95	73670384	-	Mbar_A2924	-	hypothetical protein
2825	 46.11	0	3745464..3746285	+	273	73670385	-	Mbar_A2925	-	GufA protein
2826	 46.20	0	3746560..3747111	+	183	73670386	-	Mbar_A2926	-	DNA protection protein DPS
2827	 43.37	0	3747340..3747927	-	195	73670387	-	Mbar_A2927	-	hypothetical protein
2828	 43.84	0	3748145..3748801	-	218	73670388	-	Mbar_A2928	-	SAM-dependent methyltransferase
2829	 39.48	0	3748882..3750297	-	471	73670389	-	Mbar_A2929	-	surface layer protein B
2830	 40.55	0	3750942..3752867	-	641	73670390	-	Mbar_A2930	-	cell surface protein
2831	 39.96	0	3753511..3756333	-	940	73670391	-	Mbar_A2931	-	cell surface protein
2832	 46.38	0	3757060..3758646	-	528	73670392	-	Mbar_A2932	-	histone deacetylase
2833	 47.52	+1	3758643..3760355	-	570	73670393	-	Mbar_A2933	-	hydantoinase/oxoprolinase
2834	 42.55	0	3761576..3763690	-	704	73670394	-	Mbar_A2934	-	hypothetical protein
2835	 40.50	0	3764294..3766972	-	892	73670395	-	Mbar_A2935	-	sensory transduction histidine kinase
2836	 37.29	0	3767540..3767716	+	58	73670396	-	Mbar_A2936	-	hypothetical protein
2837	 43.83	0	3767757..3767918	-	53	73670397	-	Mbar_A2937	-	rubredoxin
2838	 47.14	+1	3768025..3769284	-	419	73670398	-	Mbar_A2938	-	glutamate dehydrogenase (NAD/NADP)
2839	 32.44	-1	3769773..3770888	+	371	73670399	-	Mbar_A2939	-	transposase
2840	 36.75	-1	3770888..3772498	+	536	73670400	-	Mbar_A2940	-	hypothetical protein
2841	 30.72	-2	3774118..3775800	+	560	73670401	-	Mbar_A2941	-	hypothetical protein
2842	 48.92	+1	3776354..3777604	-	416	73670402	-	Mbar_A2942	-	hypothetical protein
2843	 46.26	0	3778053..3780443	+	796	73670403	-	Mbar_A2943	-	hypothetical protein
2844	 45.44	0	3780681..3781787	+	368	73670404	-	Mbar_A2944	-	hypothetical protein
2845	 45.75	0	3782250..3784157	+	635	73670405	-	Mbar_A2945	-	threonyl-tRNA synthetase
2846	 45.05	0	3784589..3786781	+	730	73670406	-	Mbar_A2946	-	hypothetical protein
2847	 36.74	-1	3787352..3787909	-	185	73670407	-	Mbar_A2947	-	hypothetical protein
2848	 36.23	-1	3787985..3789226	-	413	73670408	-	Mbar_A2948	-	hypothetical protein
2849	 44.04	0	3789903..3790556	-	217	73670409	-	Mbar_A2949	-	haloacid dehalogenase-like hydrolase
2850	 38.21	0	3791968..3792849	-	293	73670410	-	Mbar_A2950	-	putative regulatory protein
2851	 39.14	0	3794705..3795565	+	286	73670411	-	Mbar_A2951	-	hypothetical protein
2852	 33.44	-1	3796682..3797662	+	326	73670412	-	Mbar_A2952	-	hypothetical protein
2853	 41.56	0	3798443..3799366	+	307	73670413	-	Mbar_A2953	-	hypothetical protein
2854	 36.53	-1	3799612..3800142	-	176	73670414	-	Mbar_A2954	-	hypothetical protein
2855	 40.31	0	3801081..3801209	-	42	73670415	-	Mbar_A2955	-	hypothetical protein
2856	 41.48	0	3801295..3801429	-	44	73670416	-	Mbar_A2956	-	hypothetical protein
2857	 32.53	-1	3802452..3802949	+	165	73670417	-	Mbar_A2957	-	putative acetyltransferase
2858	 39.75	0	3803654..3805024	-	456	73670418	-	Mbar_A2958	-	hypothetical protein
2859	 43.54	0	3805718..3808459	+	913	73670419	-	Mbar_A2959	-	hypothetical protein
2860	 45.27	0	3808977..3809621	+	214	73670420	-	Mbar_A2960	-	hypothetical protein
2861	 45.47	0	3809811..3810527	+	238	73670421	-	Mbar_A2961	-	phosphoglycerate mutase
2862	 47.12	+1	3810706..3811329	-	207	73670422	-	Mbar_A2962	-	hypothetical protein
2863	 41.52	0	3811474..3811815	-	113	73670423	-	Mbar_A2963	-	hypothetical protein
2864	 43.54	0	3812227..3812373	+	48	73670424	-	Mbar_A2964	-	putative ferredoxin
2865	 43.54	0	3812559..3813332	-	257	73670425	-	Mbar_A2965	-	ArsR family transcriptional regulator
2866	 48.26	+1	3813642..3813842	+	66	73670426	-	Mbar_A2966	-	hypothetical protein
2867	 48.86	+1	3814122..3814559	+	145	73670427	-	Mbar_A2967	-	hypothetical protein
2868	 46.15	0	3814753..3816234	-	493	73670428	-	Mbar_A2968	-	kinesin light chain
2869	 42.77	0	3817126..3817962	+	278	73670429	-	Mbar_A2969	-	hypothetical protein
2870	 36.90	-1	3818838..3819005	-	55	73670430	-	Mbar_A2970	-	hypothetical protein
2871	 35.73	-1	3819579..3821411	+	610	73670431	-	Mbar_A2971	-	hypothetical protein
2872	 38.79	0	3821595..3822125	+	176	73670432	-	Mbar_A2972	-	hypothetical protein
2873	 35.31	-1	3822466..3824082	+	538	73670433	-	Mbar_A2973	-	polysaccharide biosynthesis protein
2874	 42.97	0	3824308..3824919	+	203	73670434	-	Mbar_A2974	-	hypothetical protein
2875	 51.69	+2	3825987..3827882	+	631	73670435	-	Mbar_A2975	-	hypothetical protein
2876	 39.84	0	3828392..3829144	+	250	73670436	-	Mbar_A2976	-	hypothetical protein
2877	 38.80	0	3830586..3832268	-	560	73670437	-	Mbar_A2977	-	hypothetical protein
2878	 36.24	-1	3832324..3834009	-	561	73670438	-	Mbar_A2978	-	hypothetical protein
2879	 35.24	-1	3834672..3835721	-	349	73670439	-	Mbar_A2979	-	putative histidine decarboxylase
2880	 43.07	0	3837180..3839048	-	622	73670440	-	Mbar_A2980	-	thimet oligopeptidase
2881	 41.36	0	3839469..3840365	-	298	73670441	-	Mbar_A2981	-	hypothetical protein
2882	 41.94	0	3840368..3841111	-	247	73670442	-	Mbar_A2982	-	hypothetical protein
2883	 41.03	0	3841568..3842632	-	354	73670443	-	Mbar_A2983	-	magnesium and cobalt transport protein CorA
2884	 39.85	0	3842953..3843873	+	306	73670444	-	Mbar_A2984	-	hypothetical protein
2885	 41.57	0	3844158..3845213	+	351	73670445	-	Mbar_A2985	-	hypothetical protein
2886	 47.40	+1	3845766..3847073	-	435	73670446	-	Mbar_A2986	-	phenylacetate-CoA ligase
2887	 49.83	+1	3847099..3847698	-	199	73670447	-	Mbar_A2987	-	indolepyruvate oxidoreductase subunit B
2888	 48.90	+1	3847695..3849602	-	635	73670448	-	Mbar_A2988	-	indolepyruvate ferredoxin oxidoreductase, subunit alpha
2889	 42.75	0	3850000..3850689	-	229	73670449	-	Mbar_A2989	-	hypothetical protein
2890	 30.83	-2	3851100..3851339	+	79	73670450	-	Mbar_A2990	-	hypothetical protein
2891	 32.86	-1	3851496..3851921	-	141	73670451	-	Mbar_A2991	-	hypothetical protein
2892	 34.31	-1	3851915..3852118	-	67	73670452	-	Mbar_A2992	-	hypothetical protein
2893	 42.50	0	3853739..3854992	-	417	73670453	-	Mbar_A2994	-	hypothetical protein
2894	 44.25	0	3855174..3855686	-	170	73670454	-	Mbar_A2995	-	hypothetical protein
2895	 43.04	0	3856100..3857500	-	466	73670455	-	Mbar_A2996	-	hypothetical protein
2896	 45.62	0	3858085..3859761	-	558	73670456	-	Mbar_A2997	-	glycogen phosphorylase
2897	 41.39	0	3860196..3861176	+	326	73670457	-	Mbar_A2998	-	hypothetical protein
2898	 42.83	0	3862206..3863195	+	329	73670458	-	Mbar_A2999	-	hypothetical protein
2899	 42.86	0	3863680..3864120	+	146	73670459	-	Mbar_A3000	-	hypothetical protein
2900	 42.28	0	3864482..3865129	-	215	73670460	-	Mbar_A3001	-	hypothetical protein
2901	 38.16	0	3865594..3866298	+	234	73670461	-	Mbar_A3002	-	hypothetical protein
2902	 41.82	0	3866512..3866676	-	54	73670462	-	Mbar_A3003	-	putative cytosine deaminase
2903	 42.72	0	3866817..3867221	+	134	73670463	-	Mbar_A3004	-	hypothetical protein
2904	 37.08	0	3867315..3867554	+	79	73670464	-	Mbar_A3005	-	hypothetical protein
2905	 43.27	0	3868056..3868910	+	284	73670465	-	Mbar_A3006	-	hypothetical protein
2906	 39.04	0	3869109..3871298	+	729	73670466	-	Mbar_A3007	-	two component system histidine kinase
2907	 35.12	-1	3871445..3872116	-	223	73670467	-	Mbar_A3008	-	hypothetical protein
2908	 43.36	0	3872789..3873466	-	225	73670468	-	Mbar_A3009	-	hypothetical protein
2909	 46.10	0	3874245..3875489	-	414	73670469	-	Mbar_A3010	-	ABC transporter, permease protein
2910	 43.20	0	3875661..3877049	-	462	73670470	-	Mbar_A3011	-	hypothetical protein
2911	 42.71	0	3877059..3878018	-	319	73670471	-	Mbar_A3012	-	ABC transporter, ATP-binding protein
2912	 33.33	-1	3878647..3878988	-	113	73670472	-	Mbar_A3013	-	hypothetical protein
2913	 36.19	-1	3879521..3880045	+	174	73670473	-	Mbar_A3014	-	hypothetical protein
2914	 47.91	+1	3880484..3881272	-	262	73670474	-	Mbar_A3015	-	hypothetical protein
41.74	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.