IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 41.74   STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2782	 43.49	0	3688976..3689566	+	196	73670342	-	Mbar_A2877	-	putative metalloendopeptidase
2783	 42.20	0	3689757..3690782	+	341	73670343	-	Mbar_A2878	-	hypothetical protein
2784	 44.30	0	3691136..3691819	+	227	73670344	-	Mbar_A2879	-	hypothetical protein
2785	 42.20	0	3692117..3693232	+	371	73670345	-	Mbar_A2880	-	hypothetical protein
2786	 38.21	0	3694232..3694477	-	81	73670346	-	Mbar_A2881	-	hypothetical protein
2787	 35.45	-1	3695235..3696416	-	393	73670347	-	Mbar_A2882	-	transposase
2788	 32.70	-1	3696507..3696824	+	105	73670348	-	Mbar_A2883	-	transposase
2789	 46.45	0	3696953..3699247	-	764	73670349	-	Mbar_A2884	-	cell division cycle protein
2790	 39.22	0	3702300..3703268	+	322	73670350	-	Mbar_A2886	-	integral membrane protein
2791	 40.74	0	3703577..3703738	+	53	73670351	-	Mbar_A2887	-	hypothetical protein
2792	 45.06	0	3703782..3704267	+	161	73670352	-	Mbar_A2888	-	hypothetical protein
2793	 39.34	0	3704948..3705280	+	110	73670353	-	Mbar_A2889	-	acidic integral membrane protein
2794	 41.05	0	3706157..3706480	+	107	73670354	-	Mbar_A2890	-	acidic integral membrane protein
2795	 44.32	0	3706752..3707024	-	90	73670355	-	Mbar_A2891	-	hypothetical protein
2796	 43.89	0	3707995..3709188	-	397	73670356	-	Mbar_A2893	-	O-linked N-acetylglucosamine transferase
2797	 42.35	0	3709410..3710141	+	243	73670357	-	Mbar_A2894	-	phosphoglycolate phosphatase
2798	 43.91	0	3710628..3711506	-	292	73670358	-	Mbar_A2895	-	O-linked N-acetylglucosamine transferase
2799	 41.76	0	3712494..3713003	-	169	73670359	-	Mbar_A2896	-	transcriptional regulator
2800	 43.62	0	3713246..3713527	+	93	73670360	-	Mbar_A2897	-	hypothetical protein
2801	 43.12	0	3713727..3714656	-	309	73670361	-	Mbar_A2898	-	thioredoxin reductase (NADPH)
2802	 40.91	0	3714714..3714845	-	43	73670362	-	Mbar_A2899	-	hypothetical protein
2803	 45.32	0	3715113..3715913	+	266	73670363	-	Mbar_A2900	-	diphthine synthase
2804	 41.13	0	3715953..3716234	+	93	73670364	-	Mbar_A2901	-	hypothetical protein
2805	 43.85	0	3716666..3717055	+	129	73670365	-	Mbar_A2902	-	hypothetical protein
2806	 44.33	0	3717317..3718216	+	299	73670366	-	Mbar_A2903	-	cytidine kinase / inosine-guanosine kinase
2807	 47.32	+1	3718337..3719008	+	223	73670367	-	Mbar_A2904	-	hypothetical protein
2808	 43.52	0	3719575..3720507	-	310	73670368	-	Mbar_A2905	-	UDP-glucose pyrophosphorylase
2809	 42.03	0	3720913..3721659	-	248	73670369	-	Mbar_A2906	-	methyltransferase
2810	 34.28	-1	3722628..3724106	+	492	73670370	-	Mbar_A2907	-	sensory transduction histidine kinase
2811	 40.65	0	3725926..3727224	+	432	73670371	-	Mbar_A2910	-	transport protein
2812	 42.92	0	3729096..3729575	-	159	73670372	-	Mbar_A2912	-	hypothetical protein
2813	 38.76	0	3730566..3730823	-	85	73670373	-	Mbar_A2913	-	hypothetical protein
2814	 45.58	0	3731164..3732453	-	429	73670374	-	Mbar_A2914	-	carboxypeptidase A
2815	 39.93	0	3732945..3733247	+	100	73670375	-	Mbar_A2915	-	alpha-acetolactate decarboxylase
2816	 40.80	0	3733237..3733611	+	124	73670376	-	Mbar_A2916	-	acetolactate decarboxylase
2817	 41.79	0	3733831..3735414	-	527	73670377	-	Mbar_A2917	-	hypothetical protein
2818	 37.63	0	3736460..3738835	-	791	73670378	-	Mbar_A2918	-	hypothetical protein
2819	 39.33	0	3740730..3740996	+	88	73670379	-	Mbar_A2919	-	hypothetical protein
2820	 39.36	0	3741609..3741890	+	93	73670380	-	Mbar_A2920	-	hypothetical protein
2821	 45.38	0	3742527..3742991	+	154	73670381	-	Mbar_A2921	-	formylmethanofuran dehydrogenase, subunit G
2822	 43.75	0	3743002..3744249	+	415	73670382	-	Mbar_A2922	-	formylmethanofuran dehydrogenase, subunit B
2823	 42.61	0	3744249..3744647	+	132	73670383	-	Mbar_A2923	-	formylmethanofuran dehydrogenase, subunit D
2824	 38.19	0	3744907..3745194	+	95	73670384	-	Mbar_A2924	-	hypothetical protein
2825	 46.11	0	3745464..3746285	+	273	73670385	-	Mbar_A2925	-	GufA protein
2826	 46.20	0	3746560..3747111	+	183	73670386	-	Mbar_A2926	-	DNA protection protein DPS
2827	 43.37	0	3747340..3747927	-	195	73670387	-	Mbar_A2927	-	hypothetical protein
2828	 43.84	0	3748145..3748801	-	218	73670388	-	Mbar_A2928	-	SAM-dependent methyltransferase
2829	 39.48	0	3748882..3750297	-	471	73670389	-	Mbar_A2929	-	surface layer protein B
2830	 40.55	0	3750942..3752867	-	641	73670390	-	Mbar_A2930	-	cell surface protein
2831	 39.96	0	3753511..3756333	-	940	73670391	-	Mbar_A2931	-	cell surface protein
2832	 46.38	0	3757060..3758646	-	528	73670392	-	Mbar_A2932	-	histone deacetylase
2833	 47.52	+1	3758643..3760355	-	570	73670393	-	Mbar_A2933	-	hydantoinase/oxoprolinase
2834	 42.55	0	3761576..3763690	-	704	73670394	-	Mbar_A2934	-	hypothetical protein
2835	 40.50	0	3764294..3766972	-	892	73670395	-	Mbar_A2935	-	sensory transduction histidine kinase
2836	 37.29	0	3767540..3767716	+	58	73670396	-	Mbar_A2936	-	hypothetical protein
2837	 43.83	0	3767757..3767918	-	53	73670397	-	Mbar_A2937	-	rubredoxin
2838	 47.14	+1	3768025..3769284	-	419	73670398	-	Mbar_A2938	-	glutamate dehydrogenase (NAD/NADP)
2839	 32.44	-1	3769773..3770888	+	371	73670399	-	Mbar_A2939	-	transposase
2840	 36.75	-1	3770888..3772498	+	536	73670400	-	Mbar_A2940	-	hypothetical protein
2841	 30.72	-2	3774118..3775800	+	560	73670401	-	Mbar_A2941	-	hypothetical protein
2842	 48.92	+1	3776354..3777604	-	416	73670402	-	Mbar_A2942	-	hypothetical protein
2843	 46.26	0	3778053..3780443	+	796	73670403	-	Mbar_A2943	-	hypothetical protein
2844	 45.44	0	3780681..3781787	+	368	73670404	-	Mbar_A2944	-	hypothetical protein
2845	 45.75	0	3782250..3784157	+	635	73670405	-	Mbar_A2945	-	threonyl-tRNA synthetase
2846	 45.05	0	3784589..3786781	+	730	73670406	-	Mbar_A2946	-	hypothetical protein
2847	 36.74	-1	3787352..3787909	-	185	73670407	-	Mbar_A2947	-	hypothetical protein
2848	 36.23	-1	3787985..3789226	-	413	73670408	-	Mbar_A2948	-	hypothetical protein
2849	 44.04	0	3789903..3790556	-	217	73670409	-	Mbar_A2949	-	haloacid dehalogenase-like hydrolase
2850	 38.21	0	3791968..3792849	-	293	73670410	-	Mbar_A2950	-	putative regulatory protein
2851	 39.14	0	3794705..3795565	+	286	73670411	-	Mbar_A2951	-	hypothetical protein
2852	 33.44	-1	3796682..3797662	+	326	73670412	-	Mbar_A2952	-	hypothetical protein
2853	 41.56	0	3798443..3799366	+	307	73670413	-	Mbar_A2953	-	hypothetical protein
2854	 36.53	-1	3799612..3800142	-	176	73670414	-	Mbar_A2954	-	hypothetical protein
2855	 40.31	0	3801081..3801209	-	42	73670415	-	Mbar_A2955	-	hypothetical protein
2856	 41.48	0	3801295..3801429	-	44	73670416	-	Mbar_A2956	-	hypothetical protein
2857	 32.53	-1	3802452..3802949	+	165	73670417	-	Mbar_A2957	-	putative acetyltransferase
2858	 39.75	0	3803654..3805024	-	456	73670418	-	Mbar_A2958	-	hypothetical protein
2859	 43.54	0	3805718..3808459	+	913	73670419	-	Mbar_A2959	-	hypothetical protein
2860	 45.27	0	3808977..3809621	+	214	73670420	-	Mbar_A2960	-	hypothetical protein
2861	 45.47	0	3809811..3810527	+	238	73670421	-	Mbar_A2961	-	phosphoglycerate mutase
2862	 47.12	+1	3810706..3811329	-	207	73670422	-	Mbar_A2962	-	hypothetical protein
2863	 41.52	0	3811474..3811815	-	113	73670423	-	Mbar_A2963	-	hypothetical protein
2864	 43.54	0	3812227..3812373	+	48	73670424	-	Mbar_A2964	-	putative ferredoxin
2865	 43.54	0	3812559..3813332	-	257	73670425	-	Mbar_A2965	-	ArsR family transcriptional regulator
2866	 48.26	+1	3813642..3813842	+	66	73670426	-	Mbar_A2966	-	hypothetical protein
2867	 48.86	+1	3814122..3814559	+	145	73670427	-	Mbar_A2967	-	hypothetical protein
2868	 46.15	0	3814753..3816234	-	493	73670428	-	Mbar_A2968	-	kinesin light chain
2869	 42.77	0	3817126..3817962	+	278	73670429	-	Mbar_A2969	-	hypothetical protein
2870	 36.90	-1	3818838..3819005	-	55	73670430	-	Mbar_A2970	-	hypothetical protein
2871	 35.73	-1	3819579..3821411	+	610	73670431	-	Mbar_A2971	-	hypothetical protein
2872	 38.79	0	3821595..3822125	+	176	73670432	-	Mbar_A2972	-	hypothetical protein
2873	 35.31	-1	3822466..3824082	+	538	73670433	-	Mbar_A2973	-	polysaccharide biosynthesis protein
2874	 42.97	0	3824308..3824919	+	203	73670434	-	Mbar_A2974	-	hypothetical protein
2875	 51.69	+2	3825987..3827882	+	631	73670435	-	Mbar_A2975	-	hypothetical protein
2876	 39.84	0	3828392..3829144	+	250	73670436	-	Mbar_A2976	-	hypothetical protein
2877	 38.80	0	3830586..3832268	-	560	73670437	-	Mbar_A2977	-	hypothetical protein
2878	 36.24	-1	3832324..3834009	-	561	73670438	-	Mbar_A2978	-	hypothetical protein
2879	 35.24	-1	3834672..3835721	-	349	73670439	-	Mbar_A2979	-	putative histidine decarboxylase
2880	 43.07	0	3837180..3839048	-	622	73670440	-	Mbar_A2980	-	thimet oligopeptidase
2881	 41.36	0	3839469..3840365	-	298	73670441	-	Mbar_A2981	-	hypothetical protein
41.74	MEAN

4.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.