IslandPathversion 1.0

IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.74 STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2745	 46.44	0	3625845..3626729	-	294	73670305	-	Mbar_A2840	-	heat shock protein HtpX
2746	 42.23	0	3627723..3628868	-	381	73670306	-	Mbar_A2841	-	serine/threonine protein kinase
2747	 38.46	0	3629846..3631873	+	675	73670307	-	Mbar_A2842	-	hypothetical protein
2748	 45.75	0	3632006..3634744	+	912	73670308	-	Mbar_A2843	-	ATP-dependant helicase
2749	 38.39	0	3634896..3637901	-	1001	73670309	-	Mbar_A2844	-	hypothetical protein
2750	 37.29	0	3638226..3641108	-	960	73670310	-	Mbar_A2845	-	cell surface protein
2751	 47.29	+1	3641862..3643301	+	479	73670311	-	Mbar_A2846	-	hypothetical protein
2752	 44.74	0	3643834..3644517	+	227	73670312	-	Mbar_A2847	-	lipoprotein releasing system, ATP-binding protein
2753	 42.98	0	3644528..3644983	+	151	73670313	-	Mbar_A2848	-	hypothetical protein
2754	 41.79	0	3645089..3645478	-	129	73670314	-	Mbar_A2849	-	hypothetical protein
2755	 47.16	+1	3646198..3647484	+	428	73670315	-	Mbar_A2850	-	enolase
2756	 45.99	0	3647556..3648029	-	157	73670316	-	Mbar_A2851	-	universal stress protein
2757	 41.23	0	3649407..3649748	-	113	73670317	-	Mbar_A2852	-	cell surface protein
2758	 37.17	0	3650536..3652179	-	547	73670318	-	Mbar_A2853	-	surface layer protein B
2759	 34.83	-1	3652936..3653202	-	88	73670319	-	Mbar_A2854	-	hypothetical protein
2760	 40.65	0	3653740..3654204	+	154	73670320	-	Mbar_A2855	-	hypothetical protein
2761	 40.76	0	3656487..3657995	+	502	73670321	-	Mbar_A2856	-	polyphosphate:AMP phosphotransferase
2762	 42.07	0	3658526..3659269	+	247	73670322	-	Mbar_A2857	-	ABC transporter, ATP-binding protein
2763	 41.47	0	3659548..3660960	+	470	73670323	-	Mbar_A2858	-	hypothetical protein
2764	 34.63	-1	3661078..3661464	+	128	73670324	-	Mbar_A2859	-	potassium channel protein
2765	 39.76	0	3661753..3662079	+	108	73670325	-	Mbar_A2860	-	hypothetical protein
2766	 41.19	0	3662224..3663738	+	504	73670326	-	Mbar_A2861	-	hypothetical protein
2767	 40.65	0	3663892..3667581	+	1229	73670327	-	Mbar_A2862	-	WD-40 repeat-containing protein
2768	 45.19	0	3668147..3668998	-	283	73670328	-	Mbar_A2863	-	hypothetical protein
2769	 42.50	0	3669288..3669527	-	79	73670329	-	Mbar_A2864	-	hypothetical protein
2770	 40.34	0	3669810..3670679	-	289	73670330	-	Mbar_A2865	-	ArsR family transcriptional regulator
2771	 46.76	+1	3671317..3672165	-	282	73670331	-	Mbar_A2866	-	hypothetical protein
2772	 31.02	-2	3672711..3673316	+	201	73670332	-	Mbar_A2867	-	hypothetical protein
2773	 27.95	-2	3673304..3673879	+	191	73670333	-	Mbar_A2868	-	hypothetical protein
2774	 28.80	-2	3673876..3674955	+	359	73670334	-	Mbar_A2869	-	hypothetical protein
2775	 39.33	0	3675128..3675427	-	99	73670335	-	Mbar_A2870	-	hypothetical protein
2776	 44.56	0	3675671..3677167	+	498	73670336	-	Mbar_A2871	-	hypothetical protein
2777	 49.31	+1	3677597..3678898	-	433	73670337	-	Mbar_A2872	-	phenylacetate-CoA ligase
2778	 37.79	0	3680246..3681727	+	493	73670338	-	Mbar_A2873	-	hypothetical protein
2779	 46.72	+1	3682233..3683054	+	273	73670339	-	Mbar_A2874	-	ubiquinone/menaquinone biosynthesis methyltransferase
2780	 38.57	0	3684067..3684486	+	139	73670340	-	Mbar_A2875	-	hypothetical protein
2781	 39.91	0	3685304..3688114	-	936	73670341	-	Mbar_A2876	-	sensory transduction histidine kinase
2782	 43.49	0	3688976..3689566	+	196	73670342	-	Mbar_A2877	-	putative metalloendopeptidase
2783	 42.20	0	3689757..3690782	+	341	73670343	-	Mbar_A2878	-	hypothetical protein
2784	 44.30	0	3691136..3691819	+	227	73670344	-	Mbar_A2879	-	hypothetical protein
2785	 42.20	0	3692117..3693232	+	371	73670345	-	Mbar_A2880	-	hypothetical protein
2786	 38.21	0	3694232..3694477	-	81	73670346	-	Mbar_A2881	-	hypothetical protein
2787	 35.45	-1	3695235..3696416	-	393	73670347	-	Mbar_A2882	-	transposase
2788	 32.70	-1	3696507..3696824	+	105	73670348	-	Mbar_A2883	-	transposase
2789	 46.45	0	3696953..3699247	-	764	73670349	-	Mbar_A2884	-	cell division cycle protein
2790	 39.22	0	3702300..3703268	+	322	73670350	-	Mbar_A2886	-	integral membrane protein
2791	 40.74	0	3703577..3703738	+	53	73670351	-	Mbar_A2887	-	hypothetical protein
2792	 45.06	0	3703782..3704267	+	161	73670352	-	Mbar_A2888	-	hypothetical protein
2793	 39.34	0	3704948..3705280	+	110	73670353	-	Mbar_A2889	-	acidic integral membrane protein
2794	 41.05	0	3706157..3706480	+	107	73670354	-	Mbar_A2890	-	acidic integral membrane protein
2795	 44.32	0	3706752..3707024	-	90	73670355	-	Mbar_A2891	-	hypothetical protein
2796	 43.89	0	3707995..3709188	-	397	73670356	-	Mbar_A2893	-	O-linked N-acetylglucosamine transferase
2797	 42.35	0	3709410..3710141	+	243	73670357	-	Mbar_A2894	-	phosphoglycolate phosphatase
2798	 43.91	0	3710628..3711506	-	292	73670358	-	Mbar_A2895	-	O-linked N-acetylglucosamine transferase
2799	 41.76	0	3712494..3713003	-	169	73670359	-	Mbar_A2896	-	transcriptional regulator
2800	 43.62	0	3713246..3713527	+	93	73670360	-	Mbar_A2897	-	hypothetical protein
2801	 43.12	0	3713727..3714656	-	309	73670361	-	Mbar_A2898	-	thioredoxin reductase (NADPH)
2802	 40.91	0	3714714..3714845	-	43	73670362	-	Mbar_A2899	-	hypothetical protein
2803	 45.32	0	3715113..3715913	+	266	73670363	-	Mbar_A2900	-	diphthine synthase
2804	 41.13	0	3715953..3716234	+	93	73670364	-	Mbar_A2901	-	hypothetical protein
2805	 43.85	0	3716666..3717055	+	129	73670365	-	Mbar_A2902	-	hypothetical protein
2806	 44.33	0	3717317..3718216	+	299	73670366	-	Mbar_A2903	-	cytidine kinase / inosine-guanosine kinase
2807	 47.32	+1	3718337..3719008	+	223	73670367	-	Mbar_A2904	-	hypothetical protein
2808	 43.52	0	3719575..3720507	-	310	73670368	-	Mbar_A2905	-	UDP-glucose pyrophosphorylase
2809	 42.03	0	3720913..3721659	-	248	73670369	-	Mbar_A2906	-	methyltransferase
2810	 34.28	-1	3722628..3724106	+	492	73670370	-	Mbar_A2907	-	sensory transduction histidine kinase
2811	 40.65	0	3725926..3727224	+	432	73670371	-	Mbar_A2910	-	transport protein
2812	 42.92	0	3729096..3729575	-	159	73670372	-	Mbar_A2912	-	hypothetical protein
2813	 38.76	0	3730566..3730823	-	85	73670373	-	Mbar_A2913	-	hypothetical protein
2814	 45.58	0	3731164..3732453	-	429	73670374	-	Mbar_A2914	-	carboxypeptidase A
2815	 39.93	0	3732945..3733247	+	100	73670375	-	Mbar_A2915	-	alpha-acetolactate decarboxylase
2816	 40.80	0	3733237..3733611	+	124	73670376	-	Mbar_A2916	-	acetolactate decarboxylase
2817	 41.79	0	3733831..3735414	-	527	73670377	-	Mbar_A2917	-	hypothetical protein
2818	 37.63	0	3736460..3738835	-	791	73670378	-	Mbar_A2918	-	hypothetical protein
2819	 39.33	0	3740730..3740996	+	88	73670379	-	Mbar_A2919	-	hypothetical protein
2820	 39.36	0	3741609..3741890	+	93	73670380	-	Mbar_A2920	-	hypothetical protein
2821	 45.38	0	3742527..3742991	+	154	73670381	-	Mbar_A2921	-	formylmethanofuran dehydrogenase, subunit G
2822	 43.75	0	3743002..3744249	+	415	73670382	-	Mbar_A2922	-	formylmethanofuran dehydrogenase, subunit B
2823	 42.61	0	3744249..3744647	+	132	73670383	-	Mbar_A2923	-	formylmethanofuran dehydrogenase, subunit D
2824	 38.19	0	3744907..3745194	+	95	73670384	-	Mbar_A2924	-	hypothetical protein
2825	 46.11	0	3745464..3746285	+	273	73670385	-	Mbar_A2925	-	GufA protein
2826	 46.20	0	3746560..3747111	+	183	73670386	-	Mbar_A2926	-	DNA protection protein DPS
2827	 43.37	0	3747340..3747927	-	195	73670387	-	Mbar_A2927	-	hypothetical protein
2828	 43.84	0	3748145..3748801	-	218	73670388	-	Mbar_A2928	-	SAM-dependent methyltransferase
2829	 39.48	0	3748882..3750297	-	471	73670389	-	Mbar_A2929	-	surface layer protein B
2830	 40.55	0	3750942..3752867	-	641	73670390	-	Mbar_A2930	-	cell surface protein
2831	 39.96	0	3753511..3756333	-	940	73670391	-	Mbar_A2931	-	cell surface protein
2832	 46.38	0	3757060..3758646	-	528	73670392	-	Mbar_A2932	-	histone deacetylase
2833	 47.52	+1	3758643..3760355	-	570	73670393	-	Mbar_A2933	-	hydantoinase/oxoprolinase
2834	 42.55	0	3761576..3763690	-	704	73670394	-	Mbar_A2934	-	hypothetical protein
2835	 40.50	0	3764294..3766972	-	892	73670395	-	Mbar_A2935	-	sensory transduction histidine kinase
2836	 37.29	0	3767540..3767716	+	58	73670396	-	Mbar_A2936	-	hypothetical protein
2837	 43.83	0	3767757..3767918	-	53	73670397	-	Mbar_A2937	-	rubredoxin
2838	 47.14	+1	3768025..3769284	-	419	73670398	-	Mbar_A2938	-	glutamate dehydrogenase (NAD/NADP)
2839	 32.44	-1	3769773..3770888	+	371	73670399	-	Mbar_A2939	-	transposase
2840	 36.75	-1	3770888..3772498	+	536	73670400	-	Mbar_A2940	-	hypothetical protein
2841	 30.72	-2	3774118..3775800	+	560	73670401	-	Mbar_A2941	-	hypothetical protein
2842	 48.92	+1	3776354..3777604	-	416	73670402	-	Mbar_A2942	-	hypothetical protein
2843	 46.26	0	3778053..3780443	+	796	73670403	-	Mbar_A2943	-	hypothetical protein
2844	 45.44	0	3780681..3781787	+	368	73670404	-	Mbar_A2944	-	hypothetical protein
41.74	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.