IslandPathversion 1.0

IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.74 STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2690	 40.65	0	3552425..3553504	-	359	73670250	-	Mbar_A2784	-	cell surface glycoprotein
2691	 44.78	0	3555451..3556542	-	363	73670251	-	Mbar_A2785	-	hypothetical protein
2692	 43.55	0	3556718..3557647	-	309	73670252	-	Mbar_A2786	-	hypothetical protein
2693	 42.87	0	3557682..3558866	-	394	73670253	-	Mbar_A2787	-	putative ABC transport system permease protein
2694	 41.50	0	3559308..3560483	+	391	73670254	-	Mbar_A2788	-	hypothetical protein
2695	 27.34	-2	3561428..3561844	+	138	73670255	-	Mbar_A2789	-	transposase
2696	 31.61	-2	3561894..3562241	-	115	73670256	-	Mbar_A2790	-	hypothetical protein
2697	 37.43	0	3562367..3563221	+	284	73670257	-	Mbar_A2791	-	hypothetical protein
2698	 37.17	0	3563792..3564991	-	399	73670258	-	Mbar_A2792	-	hypothetical protein
2699	 40.58	0	3565091..3566815	-	574	73670259	-	Mbar_A2793	-	hypothetical protein
2700	 39.67	0	3567701..3569356	+	551	73670260	-	Mbar_A2794	-	hypothetical protein
2701	 43.21	0	3570555..3573440	+	961	73670261	-	Mbar_A2795	-	hypothetical protein
2702	 35.96	-1	3573489..3573755	-	88	73670262	-	Mbar_A2796	-	hypothetical protein
2703	 43.15	0	3574085..3574909	+	274	73670263	-	Mbar_A2797	-	hypothetical protein
2704	 45.41	0	3574971..3575591	-	206	73670264	-	Mbar_A2798	-	hypothetical protein
2705	 37.31	0	3576455..3578617	+	720	73670265	-	Mbar_A2800	-	hypothetical protein
2706	 32.07	-2	3578630..3579655	+	341	73670266	-	Mbar_A2801	-	hypothetical protein
2707	 41.32	0	3580100..3581389	+	429	73670267	-	Mbar_A2802	-	hypothetical protein
2708	 32.58	-1	3582014..3582544	+	176	73670268	-	Mbar_A2803	-	hypothetical protein
2709	 46.18	0	3583914..3586763	-	949	73670269	-	Mbar_A2804	-	DNA gyrase subunit A
2710	 46.00	0	3586775..3588676	-	633	73670270	-	Mbar_A2805	-	DNA gyrase subunit B
2711	 46.94	+1	3589714..3590823	-	369	73670271	-	Mbar_A2806	-	DNA topoisomerase VI subunit A
2712	 45.50	0	3590825..3592690	-	621	73670272	-	Mbar_A2807	-	DNA topoisomerase VI subunit B
2713	 38.53	0	3593356..3593586	-	76	73670273	-	Mbar_A2808	-	AsnC family transcriptional regulator
2714	 44.18	0	3593777..3594403	+	208	73670274	-	Mbar_A2809	-	divalent cation transporter
2715	 44.04	0	3594400..3594978	+	192	73670275	-	Mbar_A2810	-	divalent cation transporter
2716	 46.33	0	3595138..3596337	+	399	73670276	-	Mbar_A2811	-	potassium channel protein
2717	 44.63	0	3596628..3596804	+	58	73670277	-	Mbar_A2812	-	hypothetical protein
2718	 44.93	0	3597301..3597507	+	68	73670278	-	Mbar_A2813	-	hypothetical protein
2719	 41.37	0	3597831..3598415	+	194	73670279	-	Mbar_A2814	-	PBP family phospholipid-binding protein
2720	 44.32	0	3598438..3598983	+	181	73670280	-	Mbar_A2815	-	methionine sulfoxide reductase A
2721	 36.74	-1	3599188..3600009	+	273	73670281	-	Mbar_A2816	-	hypothetical protein
2722	 34.56	-1	3600227..3601201	+	324	73670282	-	Mbar_A2817	-	hypothetical protein
2723	 44.90	0	3601317..3602414	+	365	73670283	-	Mbar_A2818	-	NADH peroxidase
2724	 47.32	+1	3602682..3603260	+	192	73670284	-	Mbar_A2819	-	MerR family transcriptional regulator
2725	 46.85	+1	3603365..3603808	+	147	73670285	-	Mbar_A2820	-	hypothetical protein
2726	 43.76	0	3603917..3605575	+	552	73670286	-	Mbar_A2821	-	acyl-CoA synthetase
2727	 47.84	+1	3607446..3608231	-	261	73670287	-	Mbar_A2822	-	cobalt transport protein
2728	 44.82	0	3608228..3609733	-	501	73670288	-	Mbar_A2823	-	putative cobalt transport system ATP-binding protein
2729	 51.85	+2	3609730..3609891	-	53	73670289	-	Mbar_A2824	-	hypothetical protein
2730	 45.79	0	3609981..3610253	-	90	73670290	-	Mbar_A2825	-	hypothetical protein
2731	 45.67	0	3610764..3611687	+	307	73670291	-	Mbar_A2826	-	hypothetical protein
2732	 36.98	0	3611982..3613106	+	374	73670292	-	Mbar_A2827	-	hypothetical protein
2733	 34.64	-1	3613146..3613451	+	101	73670293	-	Mbar_A2828	-	hypothetical protein
2734	 46.55	+1	3613583..3614452	+	289	73670294	-	Mbar_A2829	-	phosphohydrolase
2735	 30.75	-2	3614667..3615092	+	141	73670295	-	Mbar_A2830	-	hypothetical protein
2736	 34.78	-1	3615590..3616141	-	183	73670296	-	Mbar_A2831	-	hypothetical protein
2737	 36.16	-1	3617078..3617608	+	176	73670297	-	Mbar_A2832	-	hypothetical protein
2738	 32.58	-1	3617919..3618182	-	87	73670298	-	Mbar_A2833	-	hypothetical protein
2739	 45.71	0	3618451..3620535	-	694	73670299	-	Mbar_A2834	-	PgPepO oligopeptidase
2740	 48.22	+1	3621182..3622162	-	326	73670300	-	Mbar_A2835	-	sodium-dependent transporter
2741	 32.34	-1	3622831..3623031	+	66	73670301	-	Mbar_A2836	-	transposase
2742	 30.72	-2	3623180..3623485	-	101	73670302	-	Mbar_A2837	-	hypothetical protein
2743	 44.00	0	3623965..3624939	+	324	73670303	-	Mbar_A2838	-	fructokinase
2744	 43.83	0	3625066..3625665	-	199	73670304	-	Mbar_A2839	-	hypothetical protein
2745	 46.44	0	3625845..3626729	-	294	73670305	-	Mbar_A2840	-	heat shock protein HtpX
2746	 42.23	0	3627723..3628868	-	381	73670306	-	Mbar_A2841	-	serine/threonine protein kinase
2747	 38.46	0	3629846..3631873	+	675	73670307	-	Mbar_A2842	-	hypothetical protein
2748	 45.75	0	3632006..3634744	+	912	73670308	-	Mbar_A2843	-	ATP-dependant helicase
2749	 38.39	0	3634896..3637901	-	1001	73670309	-	Mbar_A2844	-	hypothetical protein
2750	 37.29	0	3638226..3641108	-	960	73670310	-	Mbar_A2845	-	cell surface protein
2751	 47.29	+1	3641862..3643301	+	479	73670311	-	Mbar_A2846	-	hypothetical protein
2752	 44.74	0	3643834..3644517	+	227	73670312	-	Mbar_A2847	-	lipoprotein releasing system, ATP-binding protein
2753	 42.98	0	3644528..3644983	+	151	73670313	-	Mbar_A2848	-	hypothetical protein
2754	 41.79	0	3645089..3645478	-	129	73670314	-	Mbar_A2849	-	hypothetical protein
2755	 47.16	+1	3646198..3647484	+	428	73670315	-	Mbar_A2850	-	enolase
2756	 45.99	0	3647556..3648029	-	157	73670316	-	Mbar_A2851	-	universal stress protein
2757	 41.23	0	3649407..3649748	-	113	73670317	-	Mbar_A2852	-	cell surface protein
2758	 37.17	0	3650536..3652179	-	547	73670318	-	Mbar_A2853	-	surface layer protein B
2759	 34.83	-1	3652936..3653202	-	88	73670319	-	Mbar_A2854	-	hypothetical protein
2760	 40.65	0	3653740..3654204	+	154	73670320	-	Mbar_A2855	-	hypothetical protein
2761	 40.76	0	3656487..3657995	+	502	73670321	-	Mbar_A2856	-	polyphosphate:AMP phosphotransferase
2762	 42.07	0	3658526..3659269	+	247	73670322	-	Mbar_A2857	-	ABC transporter, ATP-binding protein
2763	 41.47	0	3659548..3660960	+	470	73670323	-	Mbar_A2858	-	hypothetical protein
2764	 34.63	-1	3661078..3661464	+	128	73670324	-	Mbar_A2859	-	potassium channel protein
2765	 39.76	0	3661753..3662079	+	108	73670325	-	Mbar_A2860	-	hypothetical protein
2766	 41.19	0	3662224..3663738	+	504	73670326	-	Mbar_A2861	-	hypothetical protein
2767	 40.65	0	3663892..3667581	+	1229	73670327	-	Mbar_A2862	-	WD-40 repeat-containing protein
2768	 45.19	0	3668147..3668998	-	283	73670328	-	Mbar_A2863	-	hypothetical protein
2769	 42.50	0	3669288..3669527	-	79	73670329	-	Mbar_A2864	-	hypothetical protein
2770	 40.34	0	3669810..3670679	-	289	73670330	-	Mbar_A2865	-	ArsR family transcriptional regulator
2771	 46.76	+1	3671317..3672165	-	282	73670331	-	Mbar_A2866	-	hypothetical protein
2772	 31.02	-2	3672711..3673316	+	201	73670332	-	Mbar_A2867	-	hypothetical protein
2773	 27.95	-2	3673304..3673879	+	191	73670333	-	Mbar_A2868	-	hypothetical protein
2774	 28.80	-2	3673876..3674955	+	359	73670334	-	Mbar_A2869	-	hypothetical protein
2775	 39.33	0	3675128..3675427	-	99	73670335	-	Mbar_A2870	-	hypothetical protein
2776	 44.56	0	3675671..3677167	+	498	73670336	-	Mbar_A2871	-	hypothetical protein
2777	 49.31	+1	3677597..3678898	-	433	73670337	-	Mbar_A2872	-	phenylacetate-CoA ligase
2778	 37.79	0	3680246..3681727	+	493	73670338	-	Mbar_A2873	-	hypothetical protein
2779	 46.72	+1	3682233..3683054	+	273	73670339	-	Mbar_A2874	-	ubiquinone/menaquinone biosynthesis methyltransferase
2780	 38.57	0	3684067..3684486	+	139	73670340	-	Mbar_A2875	-	hypothetical protein
2781	 39.91	0	3685304..3688114	-	936	73670341	-	Mbar_A2876	-	sensory transduction histidine kinase
2782	 43.49	0	3688976..3689566	+	196	73670342	-	Mbar_A2877	-	putative metalloendopeptidase
2783	 42.20	0	3689757..3690782	+	341	73670343	-	Mbar_A2878	-	hypothetical protein
2784	 44.30	0	3691136..3691819	+	227	73670344	-	Mbar_A2879	-	hypothetical protein
2785	 42.20	0	3692117..3693232	+	371	73670345	-	Mbar_A2880	-	hypothetical protein
2786	 38.21	0	3694232..3694477	-	81	73670346	-	Mbar_A2881	-	hypothetical protein
2787	 35.45	-1	3695235..3696416	-	393	73670347	-	Mbar_A2882	-	transposase
2788	 32.70	-1	3696507..3696824	+	105	73670348	-	Mbar_A2883	-	transposase
2789	 46.45	0	3696953..3699247	-	764	73670349	-	Mbar_A2884	-	cell division cycle protein
41.74	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.