IslandPathversion 1.0

IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.74 STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2660	 46.61	+1	3498494..3500128	-	544	73670220	pheT	Mbar_A2752	-	phenylalanyl-tRNA synthetase subunit beta
2661	 45.19	0	3500465..3501139	+	224	73670221	rnhB	Mbar_A2753	-	ribonuclease HII
2662	 39.28	0	3501288..3502313	-	341	73670222	-	Mbar_A2754	-	cell surface glycoprotein (S-layer protein)
2663	 48.93	+1	3502798..3503496	-	232	73670223	-	Mbar_A2755	-	phosphoribosylformylglycinamidine synthase subunit I
2664	 43.25	0	3503559..3503810	-	83	73670224	-	Mbar_A2756	-	phosphoribosylformylglycinamidine synthase subunit PurS
2665	 31.08	-2	3504872..3505936	-	354	73670225	-	Mbar_A2758	-	transposase, putative
2666	 46.99	+1	3507060..3508055	+	331	73670226	-	Mbar_A2759	-	hypothetical protein
2667	 40.58	0	3508328..3508603	+	91	73670227	-	Mbar_A2760	-	hypothetical protein
2668	 28.25	-2	3508977..3509468	-	163	73670228	-	Mbar_A2761	-	hypothetical protein
2669	 41.67	0	3509814..3510605	+	263	73670229	-	Mbar_A2762	-	hypothetical protein
2670	 47.41	+1	3510816..3511724	-	302	73670230	-	Mbar_A2763	-	hypothetical protein
2671	 39.19	0	3511763..3512803	-	346	73670231	-	Mbar_A2764	-	hypothetical protein
2672	 45.11	0	3513015..3514118	-	367	73670232	-	Mbar_A2765	-	DNA polymerase IV
2673	 33.74	-1	3514441..3515670	-	409	73670233	-	Mbar_A2766	-	cell surface protein
2674	 38.61	0	3516326..3516856	+	176	73670234	-	Mbar_A2767	-	hypothetical protein
2675	 37.47	0	3516857..3518233	+	458	73670235	-	Mbar_A2768	-	hypothetical protein
2676	 50.00	+1	3518259..3518522	+	87	73670236	-	Mbar_A2769	-	L-sorbosone dehydrogenase
2677	 39.97	0	3519992..3520609	+	205	73670237	-	Mbar_A2770	-	hypothetical protein
2678	 47.38	+1	3520722..3521867	+	381	73670238	-	Mbar_A2771	-	L-sorbosone dehydrogenase
2679	 38.95	0	3521952..3522236	+	94	73670239	-	Mbar_A2772	-	methyltransferase
2680	 37.27	0	3523029..3523409	-	126	73670240	-	Mbar_A2774	-	transposase
2681	 41.06	0	3523974..3525461	+	495	73670241	-	Mbar_A2775	-	MoaA/NifB/PqqE family protein
2682	 42.68	0	3526255..3527217	+	320	73670242	-	Mbar_A2776	-	hypothetical protein
2683	 43.24	0	3527834..3530053	+	739	73670243	-	Mbar_A2777	-	H(+)-transporting ATPase
2684	 43.03	0	3530865..3533297	+	810	73670244	-	Mbar_A2778	-	H(+)-transporting ATPase
2685	 39.28	0	3533580..3534521	+	313	73670245	-	Mbar_A2779	-	hypothetical protein
2686	 39.74	0	3534688..3535593	-	301	73670246	-	Mbar_A2780	-	hypothetical protein
2687	 35.82	-1	3535594..3536640	-	348	73670247	-	Mbar_A2781	-	hypothetical protein
2688	 44.47	0	3538015..3544383	-	2122	73670248	-	Mbar_A2782	-	cell surface protein
2689	 44.19	0	3545597..3551599	-	2000	73670249	-	Mbar_A2783	-	cell surface protein
2690	 40.65	0	3552425..3553504	-	359	73670250	-	Mbar_A2784	-	cell surface glycoprotein
2691	 44.78	0	3555451..3556542	-	363	73670251	-	Mbar_A2785	-	hypothetical protein
2692	 43.55	0	3556718..3557647	-	309	73670252	-	Mbar_A2786	-	hypothetical protein
2693	 42.87	0	3557682..3558866	-	394	73670253	-	Mbar_A2787	-	putative ABC transport system permease protein
2694	 41.50	0	3559308..3560483	+	391	73670254	-	Mbar_A2788	-	hypothetical protein
2695	 27.34	-2	3561428..3561844	+	138	73670255	-	Mbar_A2789	-	transposase
2696	 31.61	-2	3561894..3562241	-	115	73670256	-	Mbar_A2790	-	hypothetical protein
2697	 37.43	0	3562367..3563221	+	284	73670257	-	Mbar_A2791	-	hypothetical protein
2698	 37.17	0	3563792..3564991	-	399	73670258	-	Mbar_A2792	-	hypothetical protein
2699	 40.58	0	3565091..3566815	-	574	73670259	-	Mbar_A2793	-	hypothetical protein
2700	 39.67	0	3567701..3569356	+	551	73670260	-	Mbar_A2794	-	hypothetical protein
2701	 43.21	0	3570555..3573440	+	961	73670261	-	Mbar_A2795	-	hypothetical protein
2702	 35.96	-1	3573489..3573755	-	88	73670262	-	Mbar_A2796	-	hypothetical protein
2703	 43.15	0	3574085..3574909	+	274	73670263	-	Mbar_A2797	-	hypothetical protein
2704	 45.41	0	3574971..3575591	-	206	73670264	-	Mbar_A2798	-	hypothetical protein
2705	 37.31	0	3576455..3578617	+	720	73670265	-	Mbar_A2800	-	hypothetical protein
2706	 32.07	-2	3578630..3579655	+	341	73670266	-	Mbar_A2801	-	hypothetical protein
2707	 41.32	0	3580100..3581389	+	429	73670267	-	Mbar_A2802	-	hypothetical protein
2708	 32.58	-1	3582014..3582544	+	176	73670268	-	Mbar_A2803	-	hypothetical protein
2709	 46.18	0	3583914..3586763	-	949	73670269	-	Mbar_A2804	-	DNA gyrase subunit A
2710	 46.00	0	3586775..3588676	-	633	73670270	-	Mbar_A2805	-	DNA gyrase subunit B
2711	 46.94	+1	3589714..3590823	-	369	73670271	-	Mbar_A2806	-	DNA topoisomerase VI subunit A
2712	 45.50	0	3590825..3592690	-	621	73670272	-	Mbar_A2807	-	DNA topoisomerase VI subunit B
2713	 38.53	0	3593356..3593586	-	76	73670273	-	Mbar_A2808	-	AsnC family transcriptional regulator
2714	 44.18	0	3593777..3594403	+	208	73670274	-	Mbar_A2809	-	divalent cation transporter
2715	 44.04	0	3594400..3594978	+	192	73670275	-	Mbar_A2810	-	divalent cation transporter
2716	 46.33	0	3595138..3596337	+	399	73670276	-	Mbar_A2811	-	potassium channel protein
2717	 44.63	0	3596628..3596804	+	58	73670277	-	Mbar_A2812	-	hypothetical protein
2718	 44.93	0	3597301..3597507	+	68	73670278	-	Mbar_A2813	-	hypothetical protein
2719	 41.37	0	3597831..3598415	+	194	73670279	-	Mbar_A2814	-	PBP family phospholipid-binding protein
2720	 44.32	0	3598438..3598983	+	181	73670280	-	Mbar_A2815	-	methionine sulfoxide reductase A
2721	 36.74	-1	3599188..3600009	+	273	73670281	-	Mbar_A2816	-	hypothetical protein
2722	 34.56	-1	3600227..3601201	+	324	73670282	-	Mbar_A2817	-	hypothetical protein
2723	 44.90	0	3601317..3602414	+	365	73670283	-	Mbar_A2818	-	NADH peroxidase
2724	 47.32	+1	3602682..3603260	+	192	73670284	-	Mbar_A2819	-	MerR family transcriptional regulator
2725	 46.85	+1	3603365..3603808	+	147	73670285	-	Mbar_A2820	-	hypothetical protein
2726	 43.76	0	3603917..3605575	+	552	73670286	-	Mbar_A2821	-	acyl-CoA synthetase
2727	 47.84	+1	3607446..3608231	-	261	73670287	-	Mbar_A2822	-	cobalt transport protein
2728	 44.82	0	3608228..3609733	-	501	73670288	-	Mbar_A2823	-	putative cobalt transport system ATP-binding protein
2729	 51.85	+2	3609730..3609891	-	53	73670289	-	Mbar_A2824	-	hypothetical protein
2730	 45.79	0	3609981..3610253	-	90	73670290	-	Mbar_A2825	-	hypothetical protein
2731	 45.67	0	3610764..3611687	+	307	73670291	-	Mbar_A2826	-	hypothetical protein
2732	 36.98	0	3611982..3613106	+	374	73670292	-	Mbar_A2827	-	hypothetical protein
2733	 34.64	-1	3613146..3613451	+	101	73670293	-	Mbar_A2828	-	hypothetical protein
2734	 46.55	+1	3613583..3614452	+	289	73670294	-	Mbar_A2829	-	phosphohydrolase
2735	 30.75	-2	3614667..3615092	+	141	73670295	-	Mbar_A2830	-	hypothetical protein
2736	 34.78	-1	3615590..3616141	-	183	73670296	-	Mbar_A2831	-	hypothetical protein
2737	 36.16	-1	3617078..3617608	+	176	73670297	-	Mbar_A2832	-	hypothetical protein
2738	 32.58	-1	3617919..3618182	-	87	73670298	-	Mbar_A2833	-	hypothetical protein
2739	 45.71	0	3618451..3620535	-	694	73670299	-	Mbar_A2834	-	PgPepO oligopeptidase
2740	 48.22	+1	3621182..3622162	-	326	73670300	-	Mbar_A2835	-	sodium-dependent transporter
2741	 32.34	-1	3622831..3623031	+	66	73670301	-	Mbar_A2836	-	transposase
2742	 30.72	-2	3623180..3623485	-	101	73670302	-	Mbar_A2837	-	hypothetical protein
2743	 44.00	0	3623965..3624939	+	324	73670303	-	Mbar_A2838	-	fructokinase
2744	 43.83	0	3625066..3625665	-	199	73670304	-	Mbar_A2839	-	hypothetical protein
2745	 46.44	0	3625845..3626729	-	294	73670305	-	Mbar_A2840	-	heat shock protein HtpX
2746	 42.23	0	3627723..3628868	-	381	73670306	-	Mbar_A2841	-	serine/threonine protein kinase
2747	 38.46	0	3629846..3631873	+	675	73670307	-	Mbar_A2842	-	hypothetical protein
2748	 45.75	0	3632006..3634744	+	912	73670308	-	Mbar_A2843	-	ATP-dependant helicase
2749	 38.39	0	3634896..3637901	-	1001	73670309	-	Mbar_A2844	-	hypothetical protein
2750	 37.29	0	3638226..3641108	-	960	73670310	-	Mbar_A2845	-	cell surface protein
2751	 47.29	+1	3641862..3643301	+	479	73670311	-	Mbar_A2846	-	hypothetical protein
2752	 44.74	0	3643834..3644517	+	227	73670312	-	Mbar_A2847	-	lipoprotein releasing system, ATP-binding protein
2753	 42.98	0	3644528..3644983	+	151	73670313	-	Mbar_A2848	-	hypothetical protein
2754	 41.79	0	3645089..3645478	-	129	73670314	-	Mbar_A2849	-	hypothetical protein
2755	 47.16	+1	3646198..3647484	+	428	73670315	-	Mbar_A2850	-	enolase
2756	 45.99	0	3647556..3648029	-	157	73670316	-	Mbar_A2851	-	universal stress protein
2757	 41.23	0	3649407..3649748	-	113	73670317	-	Mbar_A2852	-	cell surface protein
2758	 37.17	0	3650536..3652179	-	547	73670318	-	Mbar_A2853	-	surface layer protein B
2759	 34.83	-1	3652936..3653202	-	88	73670319	-	Mbar_A2854	-	hypothetical protein
41.74	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.