IslandPathversion 1.0

IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.74 STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2618	 44.23	0	3439130..3440689	-	519	73670178	uvrC	Mbar_A2709	-	excinuclease ABC subunit C
2619	 47.31	+1	3440912..3443938	-	1008	73670179	-	Mbar_A2710	-	excinuclease ABC subunit A
2620	 37.78	0	3445046..3445675	+	209	73670180	-	Mbar_A2711	-	acetyltransferase
2621	 31.56	-2	3445835..3446173	+	112	73670181	-	Mbar_A2712	-	hypothetical protein
2622	 39.58	0	3446945..3447280	+	111	73670182	-	Mbar_A2713	-	phosphorylase
2623	 36.90	-1	3448433..3448852	+	139	73670183	-	Mbar_A2714	-	hypothetical protein
2624	 40.35	0	3449249..3449590	-	113	73670184	-	Mbar_A2715	-	hypothetical protein
2625	 29.58	-2	3450022..3452739	-	905	73670185	-	Mbar_A2716	-	hypothetical protein
2626	 32.59	-1	3452757..3453161	-	134	73670186	-	Mbar_A2717	-	hypothetical protein
2627	 47.27	+1	3453734..3454099	+	121	73670187	-	Mbar_A2718	-	hypothetical protein
2628	 38.83	0	3454293..3454601	-	102	73670188	-	Mbar_A2719	-	hypothetical protein
2629	 46.40	0	3454784..3455893	+	369	73670189	-	Mbar_A2720	-	hypothetical protein
2630	 45.59	0	3456225..3457334	+	369	73670190	-	Mbar_A2721	-	hypothetical protein
2631	 43.01	0	3458067..3458252	+	61	73670191	-	Mbar_A2722	-	hypothetical protein
2632	 40.19	0	3459886..3460308	-	140	73670192	-	Mbar_A2724	-	hypothetical protein
2633	 48.28	+1	3460471..3460878	-	135	73670193	-	Mbar_A2725	-	hypothetical protein
2634	 38.10	0	3461775..3462446	+	223	73670194	-	Mbar_A2726	-	phosphoglycolate phosphatase
2635	 37.35	0	3463598..3464020	+	140	73670195	-	Mbar_A2727	-	hypothetical protein
2636	 40.11	0	3464665..3466065	+	466	73670196	-	Mbar_A2728	-	hypothetical protein
2637	 44.06	0	3466550..3467920	+	456	73670197	-	Mbar_A2729	-	hydrolase
2638	 40.34	0	3468041..3469225	+	394	73670198	-	Mbar_A2730	-	hypothetical protein
2639	 35.27	-1	3469880..3470086	-	68	73670199	-	Mbar_A2731	-	hypothetical protein
2640	 37.41	0	3471152..3471421	-	89	73670200	-	Mbar_A2732	-	hypothetical protein
2641	 35.27	-1	3472319..3473092	-	257	73670201	-	Mbar_A2733	-	Fe(III) dicitrate ABC transporter, ATP-binding protein
2642	 36.30	-1	3473089..3474132	-	347	73670202	-	Mbar_A2734	-	Fe(III) dicitrate ABC transporter, permease
2643	 36.06	-1	3474129..3475412	-	427	73670203	-	Mbar_A2735	-	putative iron complex transport system substrate-binding protein
2644	 35.01	-1	3475443..3476039	-	198	73670204	-	Mbar_A2736	-	hypothetical protein
2645	 33.45	-1	3476469..3477305	-	278	73670205	-	Mbar_A2737	-	methyltransferase
2646	 34.41	-1	3478647..3479759	+	370	73670206	-	Mbar_A2738	-	transposase
2647	 38.84	0	3480165..3481418	+	417	73670207	-	Mbar_A2739	-	hypothetical protein
2648	 40.98	0	3481447..3482139	-	230	73670208	-	Mbar_A2740	-	TetR family transcriptional regulator
2649	 42.52	0	3482340..3483275	+	311	73670209	-	Mbar_A2741	-	hypothetical protein
2650	 49.37	+1	3483363..3484958	+	531	73670210	-	Mbar_A2742	-	hypothetical protein
2651	 35.01	-1	3486213..3486629	+	138	73670211	-	Mbar_A2743	-	CopG family transcriptional regulator
2652	 41.22	0	3487929..3489335	+	468	73670212	-	Mbar_A2744	-	glutamate decarboxylase
2653	 36.69	-1	3489922..3490665	+	247	73670213	-	Mbar_A2745	-	hypothetical protein
2654	 31.90	-2	3490715..3490924	+	69	73670214	-	Mbar_A2746	-	hypothetical protein
2655	 42.73	0	3491738..3492748	-	336	73670215	-	Mbar_A2747	-	hypothetical protein
2656	 42.23	0	3493242..3494039	+	265	73670216	-	Mbar_A2748	-	hypothetical protein
2657	 41.27	0	3494106..3494420	+	104	73670217	-	Mbar_A2749	-	hypothetical protein
2658	 41.95	0	3494945..3495571	+	208	73670218	-	Mbar_A2750	-	hypothetical protein
2659	 42.66	0	3495687..3497873	-	728	73670219	-	Mbar_A2751	-	cell surface protein
2660	 46.61	+1	3498494..3500128	-	544	73670220	pheT	Mbar_A2752	-	phenylalanyl-tRNA synthetase subunit beta
2661	 45.19	0	3500465..3501139	+	224	73670221	rnhB	Mbar_A2753	-	ribonuclease HII
2662	 39.28	0	3501288..3502313	-	341	73670222	-	Mbar_A2754	-	cell surface glycoprotein (S-layer protein)
2663	 48.93	+1	3502798..3503496	-	232	73670223	-	Mbar_A2755	-	phosphoribosylformylglycinamidine synthase subunit I
2664	 43.25	0	3503559..3503810	-	83	73670224	-	Mbar_A2756	-	phosphoribosylformylglycinamidine synthase subunit PurS
2665	 31.08	-2	3504872..3505936	-	354	73670225	-	Mbar_A2758	-	transposase, putative
2666	 46.99	+1	3507060..3508055	+	331	73670226	-	Mbar_A2759	-	hypothetical protein
2667	 40.58	0	3508328..3508603	+	91	73670227	-	Mbar_A2760	-	hypothetical protein
2668	 28.25	-2	3508977..3509468	-	163	73670228	-	Mbar_A2761	-	hypothetical protein
2669	 41.67	0	3509814..3510605	+	263	73670229	-	Mbar_A2762	-	hypothetical protein
2670	 47.41	+1	3510816..3511724	-	302	73670230	-	Mbar_A2763	-	hypothetical protein
2671	 39.19	0	3511763..3512803	-	346	73670231	-	Mbar_A2764	-	hypothetical protein
2672	 45.11	0	3513015..3514118	-	367	73670232	-	Mbar_A2765	-	DNA polymerase IV
2673	 33.74	-1	3514441..3515670	-	409	73670233	-	Mbar_A2766	-	cell surface protein
2674	 38.61	0	3516326..3516856	+	176	73670234	-	Mbar_A2767	-	hypothetical protein
2675	 37.47	0	3516857..3518233	+	458	73670235	-	Mbar_A2768	-	hypothetical protein
2676	 50.00	+1	3518259..3518522	+	87	73670236	-	Mbar_A2769	-	L-sorbosone dehydrogenase
2677	 39.97	0	3519992..3520609	+	205	73670237	-	Mbar_A2770	-	hypothetical protein
2678	 47.38	+1	3520722..3521867	+	381	73670238	-	Mbar_A2771	-	L-sorbosone dehydrogenase
2679	 38.95	0	3521952..3522236	+	94	73670239	-	Mbar_A2772	-	methyltransferase
2680	 37.27	0	3523029..3523409	-	126	73670240	-	Mbar_A2774	-	transposase
2681	 41.06	0	3523974..3525461	+	495	73670241	-	Mbar_A2775	-	MoaA/NifB/PqqE family protein
2682	 42.68	0	3526255..3527217	+	320	73670242	-	Mbar_A2776	-	hypothetical protein
2683	 43.24	0	3527834..3530053	+	739	73670243	-	Mbar_A2777	-	H(+)-transporting ATPase
2684	 43.03	0	3530865..3533297	+	810	73670244	-	Mbar_A2778	-	H(+)-transporting ATPase
2685	 39.28	0	3533580..3534521	+	313	73670245	-	Mbar_A2779	-	hypothetical protein
2686	 39.74	0	3534688..3535593	-	301	73670246	-	Mbar_A2780	-	hypothetical protein
2687	 35.82	-1	3535594..3536640	-	348	73670247	-	Mbar_A2781	-	hypothetical protein
2688	 44.47	0	3538015..3544383	-	2122	73670248	-	Mbar_A2782	-	cell surface protein
2689	 44.19	0	3545597..3551599	-	2000	73670249	-	Mbar_A2783	-	cell surface protein
2690	 40.65	0	3552425..3553504	-	359	73670250	-	Mbar_A2784	-	cell surface glycoprotein
2691	 44.78	0	3555451..3556542	-	363	73670251	-	Mbar_A2785	-	hypothetical protein
2692	 43.55	0	3556718..3557647	-	309	73670252	-	Mbar_A2786	-	hypothetical protein
2693	 42.87	0	3557682..3558866	-	394	73670253	-	Mbar_A2787	-	putative ABC transport system permease protein
2694	 41.50	0	3559308..3560483	+	391	73670254	-	Mbar_A2788	-	hypothetical protein
2695	 27.34	-2	3561428..3561844	+	138	73670255	-	Mbar_A2789	-	transposase
2696	 31.61	-2	3561894..3562241	-	115	73670256	-	Mbar_A2790	-	hypothetical protein
2697	 37.43	0	3562367..3563221	+	284	73670257	-	Mbar_A2791	-	hypothetical protein
2698	 37.17	0	3563792..3564991	-	399	73670258	-	Mbar_A2792	-	hypothetical protein
2699	 40.58	0	3565091..3566815	-	574	73670259	-	Mbar_A2793	-	hypothetical protein
2700	 39.67	0	3567701..3569356	+	551	73670260	-	Mbar_A2794	-	hypothetical protein
2701	 43.21	0	3570555..3573440	+	961	73670261	-	Mbar_A2795	-	hypothetical protein
2702	 35.96	-1	3573489..3573755	-	88	73670262	-	Mbar_A2796	-	hypothetical protein
2703	 43.15	0	3574085..3574909	+	274	73670263	-	Mbar_A2797	-	hypothetical protein
2704	 45.41	0	3574971..3575591	-	206	73670264	-	Mbar_A2798	-	hypothetical protein
2705	 37.31	0	3576455..3578617	+	720	73670265	-	Mbar_A2800	-	hypothetical protein
2706	 32.07	-2	3578630..3579655	+	341	73670266	-	Mbar_A2801	-	hypothetical protein
2707	 41.32	0	3580100..3581389	+	429	73670267	-	Mbar_A2802	-	hypothetical protein
2708	 32.58	-1	3582014..3582544	+	176	73670268	-	Mbar_A2803	-	hypothetical protein
2709	 46.18	0	3583914..3586763	-	949	73670269	-	Mbar_A2804	-	DNA gyrase subunit A
2710	 46.00	0	3586775..3588676	-	633	73670270	-	Mbar_A2805	-	DNA gyrase subunit B
2711	 46.94	+1	3589714..3590823	-	369	73670271	-	Mbar_A2806	-	DNA topoisomerase VI subunit A
2712	 45.50	0	3590825..3592690	-	621	73670272	-	Mbar_A2807	-	DNA topoisomerase VI subunit B
2713	 38.53	0	3593356..3593586	-	76	73670273	-	Mbar_A2808	-	AsnC family transcriptional regulator
2714	 44.18	0	3593777..3594403	+	208	73670274	-	Mbar_A2809	-	divalent cation transporter
2715	 44.04	0	3594400..3594978	+	192	73670275	-	Mbar_A2810	-	divalent cation transporter
2716	 46.33	0	3595138..3596337	+	399	73670276	-	Mbar_A2811	-	potassium channel protein
2717	 44.63	0	3596628..3596804	+	58	73670277	-	Mbar_A2812	-	hypothetical protein
41.74	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.