IslandPathversion 1.0

IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.74 STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2568	 34.88	-1	3367842..3368099	+	85	73670128	-	Mbar_A2657	-	hypothetical protein
2569	 42.42	0	3368258..3368851	-	197	73670129	-	Mbar_A2658	-	hypothetical protein
2570	 39.02	0	3369234..3369497	-	87	73670130	-	Mbar_A2659	-	hypothetical protein
2571	 42.47	0	3369590..3369808	-	72	73670131	-	Mbar_A2660	-	hypothetical protein
2572	 37.59	0	3369805..3369945	-	46	73670132	-	Mbar_A2661	-	hypothetical protein
2573	 40.76	0	3370021..3373251	-	1076	73670133	-	Mbar_A2662	-	putative type I restriction enzyme R protein
2574	 33.59	-1	3373408..3374172	+	254	73670134	-	Mbar_A2663	-	hypothetical protein
2575	 38.57	0	3374459..3375031	-	190	73670135	-	Mbar_A2664	-	hypothetical protein
2576	 34.60	-1	3375000..3376340	-	446	73670136	-	Mbar_A2665	-	type I restriction-modification system specificity subunit
2577	 45.65	0	3376340..3377866	-	508	73670137	-	Mbar_A2666	-	type I restriction-modification system specificity subunit
2578	 44.65	0	3378199..3378516	+	105	73670138	-	Mbar_A2667	-	hypothetical protein
2579	 44.56	0	3378757..3379878	-	373	73670139	-	Mbar_A2668	-	hypothetical protein
2580	 49.02	+1	3382454..3382963	-	169	73670140	-	Mbar_A2669	-	hypothetical protein
2581	 39.15	0	3383206..3385113	-	635	73670141	-	Mbar_A2670	-	hypothetical protein
2582	 39.62	0	3385693..3386598	+	301	73670142	-	Mbar_A2671	-	hypothetical protein
2583	 46.31	0	3386776..3387684	-	302	73670143	-	Mbar_A2672	-	hypothetical protein
2584	 42.63	0	3388661..3389854	-	397	73670144	-	Mbar_A2674	-	molybdenum cofactor biosynthesis protein MoeA2
2585	 41.90	0	3390133..3390774	+	213	73670145	-	Mbar_A2675	-	molybdopterin converting factor, subunit 2
2586	 40.44	0	3390771..3390953	+	60	73670146	-	Mbar_A2676	-	hypothetical protein
2587	 33.33	-1	3390925..3391086	+	53	73670147	-	Mbar_A2677	-	hypothetical protein
2588	 28.75	-2	3391222..3391548	-	108	73670148	-	Mbar_A2678	-	hypothetical protein
2589	 43.40	0	3393252..3395912	-	886	73670149	-	Mbar_A2680	-	sensory transduction histidine kinase
2590	 37.22	0	3396433..3396792	+	119	73670150	-	Mbar_A2681	-	hypothetical protein
2591	 29.67	-2	3396965..3397237	+	90	73670151	-	Mbar_A2682	-	putative transposase
2592	 35.39	-1	3397433..3398161	-	242	73670152	-	Mbar_A2683	-	hypothetical protein
2593	 41.00	0	3399471..3400748	-	425	73670153	-	Mbar_A2684	-	hypothetical protein
2594	 42.31	0	3401334..3402782	+	482	73670154	-	Mbar_A2685	-	homospermidine synthase
2595	 32.69	-1	3403503..3404276	-	257	73670155	-	Mbar_A2686	-	hypothetical protein
2596	 39.32	0	3404483..3405667	-	394	73670156	-	Mbar_A2687	-	hypothetical protein
2597	 40.74	0	3406067..3406552	+	161	73670157	-	Mbar_A2688	-	hypothetical protein
2598	 42.01	0	3406638..3408377	+	579	73670158	-	Mbar_A2689	-	uncharacterized ABC transporter, ATPase component
2599	 44.05	0	3408364..3410211	+	615	73670159	-	Mbar_A2690	-	multidrug resistance ABC transporter
2600	 42.86	0	3410769..3413171	-	800	73670160	-	Mbar_A2691	-	hypothetical protein
2601	 34.81	-1	3414286..3416865	+	859	73670161	-	Mbar_A2692	-	hypothetical protein
2602	 40.10	0	3416868..3417059	+	63	73670162	-	Mbar_A2693	-	hypothetical protein
2603	 36.03	-1	3417365..3418477	-	370	73670163	-	Mbar_A2694	-	transposase
2604	 31.91	-2	3418637..3418918	+	93	73670164	-	Mbar_A2695	-	transposase
2605	 43.33	0	3419074..3420504	+	476	73670165	-	Mbar_A2696	-	dihydrolipoamide dehydrogenase
2606	 36.43	-1	3421000..3422388	-	462	73670166	-	Mbar_A2697	-	hypothetical protein
2607	 38.10	0	3422504..3423322	+	272	73670167	-	Mbar_A2698	-	hypothetical protein
2608	 40.69	0	3423670..3424077	+	135	73670168	-	Mbar_A2699	-	putative inorganic pyrophosphatase
2609	 45.32	0	3424584..3425726	+	380	73670169	-	Mbar_A2700	-	arylsulfatase regulator
2610	 38.66	0	3426009..3426365	+	118	73670170	-	Mbar_A2701	-	hypothetical protein
2611	 47.99	+1	3426879..3428174	-	431	73670171	-	Mbar_A2702	-	nitrogenase-related protein
2612	 48.77	+1	3428171..3430411	-	746	73670172	-	Mbar_A2703	-	nitrogen fixation protein NifH/NifE
2613	 32.47	-1	3430955..3432700	-	581	73670173	-	Mbar_A2704	-	hypothetical protein
2614	 37.67	0	3433123..3433491	+	122	73670174	-	Mbar_A2705	-	iron-sulfur cluster-binding protein
2615	 35.99	-1	3433518..3435398	-	626	73670175	-	Mbar_A2706	-	hypothetical protein
2616	 37.48	0	3435670..3436392	-	240	73670176	-	Mbar_A2707	-	hypothetical protein
2617	 46.35	0	3436983..3438995	-	670	73670177	-	Mbar_A2708	-	excinuclease ABC subunit B
2618	 44.23	0	3439130..3440689	-	519	73670178	uvrC	Mbar_A2709	-	excinuclease ABC subunit C
2619	 47.31	+1	3440912..3443938	-	1008	73670179	-	Mbar_A2710	-	excinuclease ABC subunit A
2620	 37.78	0	3445046..3445675	+	209	73670180	-	Mbar_A2711	-	acetyltransferase
2621	 31.56	-2	3445835..3446173	+	112	73670181	-	Mbar_A2712	-	hypothetical protein
2622	 39.58	0	3446945..3447280	+	111	73670182	-	Mbar_A2713	-	phosphorylase
2623	 36.90	-1	3448433..3448852	+	139	73670183	-	Mbar_A2714	-	hypothetical protein
2624	 40.35	0	3449249..3449590	-	113	73670184	-	Mbar_A2715	-	hypothetical protein
2625	 29.58	-2	3450022..3452739	-	905	73670185	-	Mbar_A2716	-	hypothetical protein
2626	 32.59	-1	3452757..3453161	-	134	73670186	-	Mbar_A2717	-	hypothetical protein
2627	 47.27	+1	3453734..3454099	+	121	73670187	-	Mbar_A2718	-	hypothetical protein
2628	 38.83	0	3454293..3454601	-	102	73670188	-	Mbar_A2719	-	hypothetical protein
2629	 46.40	0	3454784..3455893	+	369	73670189	-	Mbar_A2720	-	hypothetical protein
2630	 45.59	0	3456225..3457334	+	369	73670190	-	Mbar_A2721	-	hypothetical protein
2631	 43.01	0	3458067..3458252	+	61	73670191	-	Mbar_A2722	-	hypothetical protein
2632	 40.19	0	3459886..3460308	-	140	73670192	-	Mbar_A2724	-	hypothetical protein
2633	 48.28	+1	3460471..3460878	-	135	73670193	-	Mbar_A2725	-	hypothetical protein
2634	 38.10	0	3461775..3462446	+	223	73670194	-	Mbar_A2726	-	phosphoglycolate phosphatase
2635	 37.35	0	3463598..3464020	+	140	73670195	-	Mbar_A2727	-	hypothetical protein
2636	 40.11	0	3464665..3466065	+	466	73670196	-	Mbar_A2728	-	hypothetical protein
2637	 44.06	0	3466550..3467920	+	456	73670197	-	Mbar_A2729	-	hydrolase
2638	 40.34	0	3468041..3469225	+	394	73670198	-	Mbar_A2730	-	hypothetical protein
2639	 35.27	-1	3469880..3470086	-	68	73670199	-	Mbar_A2731	-	hypothetical protein
2640	 37.41	0	3471152..3471421	-	89	73670200	-	Mbar_A2732	-	hypothetical protein
2641	 35.27	-1	3472319..3473092	-	257	73670201	-	Mbar_A2733	-	Fe(III) dicitrate ABC transporter, ATP-binding protein
2642	 36.30	-1	3473089..3474132	-	347	73670202	-	Mbar_A2734	-	Fe(III) dicitrate ABC transporter, permease
2643	 36.06	-1	3474129..3475412	-	427	73670203	-	Mbar_A2735	-	putative iron complex transport system substrate-binding protein
2644	 35.01	-1	3475443..3476039	-	198	73670204	-	Mbar_A2736	-	hypothetical protein
2645	 33.45	-1	3476469..3477305	-	278	73670205	-	Mbar_A2737	-	methyltransferase
2646	 34.41	-1	3478647..3479759	+	370	73670206	-	Mbar_A2738	-	transposase
2647	 38.84	0	3480165..3481418	+	417	73670207	-	Mbar_A2739	-	hypothetical protein
2648	 40.98	0	3481447..3482139	-	230	73670208	-	Mbar_A2740	-	TetR family transcriptional regulator
2649	 42.52	0	3482340..3483275	+	311	73670209	-	Mbar_A2741	-	hypothetical protein
2650	 49.37	+1	3483363..3484958	+	531	73670210	-	Mbar_A2742	-	hypothetical protein
2651	 35.01	-1	3486213..3486629	+	138	73670211	-	Mbar_A2743	-	CopG family transcriptional regulator
2652	 41.22	0	3487929..3489335	+	468	73670212	-	Mbar_A2744	-	glutamate decarboxylase
2653	 36.69	-1	3489922..3490665	+	247	73670213	-	Mbar_A2745	-	hypothetical protein
2654	 31.90	-2	3490715..3490924	+	69	73670214	-	Mbar_A2746	-	hypothetical protein
2655	 42.73	0	3491738..3492748	-	336	73670215	-	Mbar_A2747	-	hypothetical protein
2656	 42.23	0	3493242..3494039	+	265	73670216	-	Mbar_A2748	-	hypothetical protein
2657	 41.27	0	3494106..3494420	+	104	73670217	-	Mbar_A2749	-	hypothetical protein
2658	 41.95	0	3494945..3495571	+	208	73670218	-	Mbar_A2750	-	hypothetical protein
2659	 42.66	0	3495687..3497873	-	728	73670219	-	Mbar_A2751	-	cell surface protein
2660	 46.61	+1	3498494..3500128	-	544	73670220	pheT	Mbar_A2752	-	phenylalanyl-tRNA synthetase subunit beta
2661	 45.19	0	3500465..3501139	+	224	73670221	rnhB	Mbar_A2753	-	ribonuclease HII
2662	 39.28	0	3501288..3502313	-	341	73670222	-	Mbar_A2754	-	cell surface glycoprotein (S-layer protein)
2663	 48.93	+1	3502798..3503496	-	232	73670223	-	Mbar_A2755	-	phosphoribosylformylglycinamidine synthase subunit I
2664	 43.25	0	3503559..3503810	-	83	73670224	-	Mbar_A2756	-	phosphoribosylformylglycinamidine synthase subunit PurS
2665	 31.08	-2	3504872..3505936	-	354	73670225	-	Mbar_A2758	-	transposase, putative
2666	 46.99	+1	3507060..3508055	+	331	73670226	-	Mbar_A2759	-	hypothetical protein
2667	 40.58	0	3508328..3508603	+	91	73670227	-	Mbar_A2760	-	hypothetical protein
41.74	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.