IslandPathversion 1.0

IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.74 STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2528	 41.59	0	3307613..3307939	+	108	73670088	-	Mbar_A2614	-	hypothetical protein
2529	 41.87	0	3308261..3309103	-	280	73670089	-	Mbar_A2615	-	ATP-binding protein involved in chromosome partitioning
2530	 44.17	0	3310345..3311304	+	319	73670090	-	Mbar_A2616	-	hypothetical protein
2531	 45.13	0	3311304..3311642	+	112	73670091	-	Mbar_A2617	-	branched chain amino acid transport protein AzlD
2532	 45.22	0	3311954..3312811	+	285	73670092	-	Mbar_A2618	-	sulfite reductase, beta subunit
2533	 39.09	0	3313304..3313807	+	167	73670093	-	Mbar_A2619	-	hypothetical protein
2534	 39.44	0	3313894..3314613	+	239	73670094	-	Mbar_A2620	-	hypothetical protein
2535	 32.91	-1	3314883..3318677	-	1264	73670095	-	Mbar_A2621	-	hypothetical protein
2536	 42.72	0	3319274..3319486	-	70	73670096	-	Mbar_A2622	-	hypothetical protein
2537	 47.29	+1	3321011..3321361	-	116	73670097	-	Mbar_A2624	-	hypothetical protein
2538	 44.79	0	3322131..3322619	+	162	73670098	-	Mbar_A2625	-	hypothetical protein
2539	 41.00	0	3323109..3323447	+	112	73670099	-	Mbar_A2626	-	6-pyruvoyltetrahydropterin synthase
2540	 46.44	0	3323605..3324672	-	355	73670100	-	Mbar_A2627	-	hypothetical protein
2541	 38.83	0	3324871..3325143	+	90	73670101	-	Mbar_A2628	-	hypothetical protein
2542	 43.49	0	3326036..3326557	+	173	73670102	-	Mbar_A2630	-	hypothetical protein
2543	 34.83	-1	3328164..3328898	+	244	73670103	-	Mbar_A2631	-	hypothetical protein
2544	 46.11	0	3329689..3331269	+	526	73670104	-	Mbar_A2632	-	phosphoenolpyruvate carboxylase
2545	 38.75	0	3331390..3332127	-	245	73670105	-	Mbar_A2633	-	cell surface protein
2546	 35.54	-1	3332704..3333246	-	180	73670106	-	Mbar_A2635	-	hypothetical protein
2547	 47.60	+1	3333890..3335326	+	478	73670107	-	Mbar_A2636	-	integral membrane protein
2548	 39.00	0	3336701..3337159	+	152	73670108	-	Mbar_A2637	-	MarR family transcriptional regulator
2549	 37.39	0	3337877..3338344	-	155	73670109	-	Mbar_A2638	-	transposase
2550	 43.97	0	3338894..3340096	+	400	73670110	-	Mbar_A2639	-	aldo/keto reductase
2551	 36.21	-1	3340409..3341902	-	497	73670111	-	Mbar_A2640	-	hypothetical protein
2552	 37.00	0	3342272..3342598	-	108	73670112	-	Mbar_A2641	-	hypothetical protein
2553	 43.01	0	3342723..3344438	-	571	73670113	-	Mbar_A2642	-	hypothetical protein
2554	 45.60	0	3344599..3346074	-	491	73670114	-	Mbar_A2643	-	DNA repair helicase RAD25
2555	 36.69	-1	3346647..3347033	+	128	73670115	-	Mbar_A2644	-	hypothetical protein
2556	 39.68	0	3347178..3347366	+	62	73670116	-	Mbar_A2645	-	hypothetical protein
2557	 43.13	0	3348875..3351508	-	877	73670117	-	Mbar_A2646	-	hypothetical protein
2558	 43.21	0	3351505..3353508	-	667	73670118	-	Mbar_A2647	-	hypothetical protein
2559	 42.18	0	3353517..3354443	-	308	73670119	-	Mbar_A2648	-	hypothetical protein
2560	 44.90	0	3354619..3355638	-	339	73670120	-	Mbar_A2649	-	moxR-like ATPase
2561	 38.60	0	3355655..3356509	-	284	73670121	-	Mbar_A2650	-	hypothetical protein
2562	 24.55	-2	3357006..3358223	+	405	73670122	-	Mbar_A2651	-	hypothetical protein
2563	 33.51	-1	3358595..3361354	-	919	73670123	-	Mbar_A2652	-	hypothetical protein
2564	 50.08	+1	3362031..3362675	-	214	73670124	-	Mbar_A2653	-	ABC transporter, ATP-binding protein
2565	 46.35	0	3362864..3364069	-	401	73670125	-	Mbar_A2654	-	ABC transporter, permease protein
2566	 43.50	0	3364315..3365868	-	517	73670126	-	Mbar_A2655	-	hypothetical protein
2567	 46.76	+1	3366189..3367469	-	426	73670127	-	Mbar_A2656	-	Na(+)-linked D-alanine glycine permease
2568	 34.88	-1	3367842..3368099	+	85	73670128	-	Mbar_A2657	-	hypothetical protein
2569	 42.42	0	3368258..3368851	-	197	73670129	-	Mbar_A2658	-	hypothetical protein
2570	 39.02	0	3369234..3369497	-	87	73670130	-	Mbar_A2659	-	hypothetical protein
2571	 42.47	0	3369590..3369808	-	72	73670131	-	Mbar_A2660	-	hypothetical protein
2572	 37.59	0	3369805..3369945	-	46	73670132	-	Mbar_A2661	-	hypothetical protein
2573	 40.76	0	3370021..3373251	-	1076	73670133	-	Mbar_A2662	-	putative type I restriction enzyme R protein
2574	 33.59	-1	3373408..3374172	+	254	73670134	-	Mbar_A2663	-	hypothetical protein
2575	 38.57	0	3374459..3375031	-	190	73670135	-	Mbar_A2664	-	hypothetical protein
2576	 34.60	-1	3375000..3376340	-	446	73670136	-	Mbar_A2665	-	type I restriction-modification system specificity subunit
2577	 45.65	0	3376340..3377866	-	508	73670137	-	Mbar_A2666	-	type I restriction-modification system specificity subunit
2578	 44.65	0	3378199..3378516	+	105	73670138	-	Mbar_A2667	-	hypothetical protein
2579	 44.56	0	3378757..3379878	-	373	73670139	-	Mbar_A2668	-	hypothetical protein
2580	 49.02	+1	3382454..3382963	-	169	73670140	-	Mbar_A2669	-	hypothetical protein
2581	 39.15	0	3383206..3385113	-	635	73670141	-	Mbar_A2670	-	hypothetical protein
2582	 39.62	0	3385693..3386598	+	301	73670142	-	Mbar_A2671	-	hypothetical protein
2583	 46.31	0	3386776..3387684	-	302	73670143	-	Mbar_A2672	-	hypothetical protein
2584	 42.63	0	3388661..3389854	-	397	73670144	-	Mbar_A2674	-	molybdenum cofactor biosynthesis protein MoeA2
2585	 41.90	0	3390133..3390774	+	213	73670145	-	Mbar_A2675	-	molybdopterin converting factor, subunit 2
2586	 40.44	0	3390771..3390953	+	60	73670146	-	Mbar_A2676	-	hypothetical protein
2587	 33.33	-1	3390925..3391086	+	53	73670147	-	Mbar_A2677	-	hypothetical protein
2588	 28.75	-2	3391222..3391548	-	108	73670148	-	Mbar_A2678	-	hypothetical protein
2589	 43.40	0	3393252..3395912	-	886	73670149	-	Mbar_A2680	-	sensory transduction histidine kinase
2590	 37.22	0	3396433..3396792	+	119	73670150	-	Mbar_A2681	-	hypothetical protein
2591	 29.67	-2	3396965..3397237	+	90	73670151	-	Mbar_A2682	-	putative transposase
2592	 35.39	-1	3397433..3398161	-	242	73670152	-	Mbar_A2683	-	hypothetical protein
2593	 41.00	0	3399471..3400748	-	425	73670153	-	Mbar_A2684	-	hypothetical protein
2594	 42.31	0	3401334..3402782	+	482	73670154	-	Mbar_A2685	-	homospermidine synthase
2595	 32.69	-1	3403503..3404276	-	257	73670155	-	Mbar_A2686	-	hypothetical protein
2596	 39.32	0	3404483..3405667	-	394	73670156	-	Mbar_A2687	-	hypothetical protein
2597	 40.74	0	3406067..3406552	+	161	73670157	-	Mbar_A2688	-	hypothetical protein
2598	 42.01	0	3406638..3408377	+	579	73670158	-	Mbar_A2689	-	uncharacterized ABC transporter, ATPase component
2599	 44.05	0	3408364..3410211	+	615	73670159	-	Mbar_A2690	-	multidrug resistance ABC transporter
2600	 42.86	0	3410769..3413171	-	800	73670160	-	Mbar_A2691	-	hypothetical protein
2601	 34.81	-1	3414286..3416865	+	859	73670161	-	Mbar_A2692	-	hypothetical protein
2602	 40.10	0	3416868..3417059	+	63	73670162	-	Mbar_A2693	-	hypothetical protein
2603	 36.03	-1	3417365..3418477	-	370	73670163	-	Mbar_A2694	-	transposase
2604	 31.91	-2	3418637..3418918	+	93	73670164	-	Mbar_A2695	-	transposase
2605	 43.33	0	3419074..3420504	+	476	73670165	-	Mbar_A2696	-	dihydrolipoamide dehydrogenase
2606	 36.43	-1	3421000..3422388	-	462	73670166	-	Mbar_A2697	-	hypothetical protein
2607	 38.10	0	3422504..3423322	+	272	73670167	-	Mbar_A2698	-	hypothetical protein
2608	 40.69	0	3423670..3424077	+	135	73670168	-	Mbar_A2699	-	putative inorganic pyrophosphatase
2609	 45.32	0	3424584..3425726	+	380	73670169	-	Mbar_A2700	-	arylsulfatase regulator
2610	 38.66	0	3426009..3426365	+	118	73670170	-	Mbar_A2701	-	hypothetical protein
2611	 47.99	+1	3426879..3428174	-	431	73670171	-	Mbar_A2702	-	nitrogenase-related protein
2612	 48.77	+1	3428171..3430411	-	746	73670172	-	Mbar_A2703	-	nitrogen fixation protein NifH/NifE
2613	 32.47	-1	3430955..3432700	-	581	73670173	-	Mbar_A2704	-	hypothetical protein
2614	 37.67	0	3433123..3433491	+	122	73670174	-	Mbar_A2705	-	iron-sulfur cluster-binding protein
2615	 35.99	-1	3433518..3435398	-	626	73670175	-	Mbar_A2706	-	hypothetical protein
2616	 37.48	0	3435670..3436392	-	240	73670176	-	Mbar_A2707	-	hypothetical protein
2617	 46.35	0	3436983..3438995	-	670	73670177	-	Mbar_A2708	-	excinuclease ABC subunit B
2618	 44.23	0	3439130..3440689	-	519	73670178	uvrC	Mbar_A2709	-	excinuclease ABC subunit C
2619	 47.31	+1	3440912..3443938	-	1008	73670179	-	Mbar_A2710	-	excinuclease ABC subunit A
2620	 37.78	0	3445046..3445675	+	209	73670180	-	Mbar_A2711	-	acetyltransferase
2621	 31.56	-2	3445835..3446173	+	112	73670181	-	Mbar_A2712	-	hypothetical protein
2622	 39.58	0	3446945..3447280	+	111	73670182	-	Mbar_A2713	-	phosphorylase
2623	 36.90	-1	3448433..3448852	+	139	73670183	-	Mbar_A2714	-	hypothetical protein
2624	 40.35	0	3449249..3449590	-	113	73670184	-	Mbar_A2715	-	hypothetical protein
2625	 29.58	-2	3450022..3452739	-	905	73670185	-	Mbar_A2716	-	hypothetical protein
2626	 32.59	-1	3452757..3453161	-	134	73670186	-	Mbar_A2717	-	hypothetical protein
2627	 47.27	+1	3453734..3454099	+	121	73670187	-	Mbar_A2718	-	hypothetical protein
41.74	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.