IslandPathversion 1.0

IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.74 STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2482	 47.30	+1	3236402..3236716	-	104	73670042	-	Mbar_A2564	-	cobalamin biosynthesis protein
2483	 43.75	0	3236726..3237445	-	239	73670043	-	Mbar_A2565	-	cobalt transport protein CbiM
2484	 43.89	0	3239024..3240577	-	517	73670044	-	Mbar_A2567	-	heteropolysaccharide repeat-containing protein
2485	 39.95	0	3240599..3241006	-	135	73670045	-	Mbar_A2568	-	hypothetical protein
2486	 42.03	0	3242491..3244008	-	505	73670046	-	Mbar_A2569	-	surface layer protein B
2487	 39.50	0	3244686..3245204	+	172	73670047	-	Mbar_A2570	-	hypothetical protein
2488	 29.60	-2	3246835..3248787	+	650	73670048	-	Mbar_A2572	-	hypothetical protein
2489	 34.10	-1	3248771..3249553	+	260	73670049	-	Mbar_A2573	-	hypothetical protein
2490	 33.33	-1	3250160..3250588	+	142	73670050	-	Mbar_A2574	-	helicase
2491	 39.76	0	3250739..3251158	+	139	73670051	-	Mbar_A2575	-	MarR family transcriptional regulator
2492	 46.41	0	3251244..3253652	+	802	73670052	-	Mbar_A2576	-	ATP-dependent protease La
2493	 40.49	0	3254455..3254943	+	162	73670053	-	Mbar_A2577	-	thioredoxin
2494	 40.12	0	3255324..3257003	-	559	73670054	-	Mbar_A2578	-	2-octaprenylphenol hydroxylase
2495	 42.78	0	3257197..3258096	-	299	73670055	-	Mbar_A2579	-	hypothetical protein
2496	 41.41	0	3258763..3259431	+	222	73670056	-	Mbar_A2580	-	iron-sulfur flavoprotein
2497	 44.86	0	3259601..3260815	-	404	73670057	-	Mbar_A2581	-	membrane transport protein
2498	 43.73	0	3261199..3261996	+	265	73670058	-	Mbar_A2582	-	hypothetical protein
2499	 44.66	0	3262156..3262782	+	208	73670059	-	Mbar_A2583	-	hypothetical protein
2500	 40.62	0	3263043..3264482	-	479	73670060	-	Mbar_A2584	-	surface antigen gene
2501	 30.84	-2	3264650..3265210	-	186	73670061	-	Mbar_A2585	-	hypothetical protein
2502	 43.66	0	3266569..3266994	+	141	73670062	-	Mbar_A2586	-	universal stress protein
2503	 37.50	0	3267076..3267291	-	71	73670063	-	Mbar_A2587	-	hypothetical protein
2504	 48.94	+1	3267535..3268995	-	486	73670064	-	Mbar_A2588	-	formylmethanofuran dehydrogenase, subunit F
2505	 49.05	+1	3268995..3271373	-	792	73670065	-	Mbar_A2589	-	CoB--CoM heterodisulfide reductase subunit A
2506	 37.77	0	3274333..3275640	+	435	73670066	-	Mbar_A2591	-	transposase
2507	 32.59	-1	3276062..3276466	+	134	73670067	-	Mbar_A2592	-	transposase
2508	 38.94	0	3277218..3278447	+	409	73670068	-	Mbar_A2593	-	hypothetical protein
2509	 38.50	0	3278659..3280632	+	657	73670069	-	Mbar_A2594	-	hypothetical protein
2510	 37.82	0	3281893..3282360	+	155	73670070	-	Mbar_A2595	-	transposase
2511	 47.44	+1	3282741..3283385	+	214	73670071	-	Mbar_A2596	-	hypothetical protein
2512	 40.38	0	3283973..3287689	+	1238	73670072	-	Mbar_A2597	-	hypothetical protein
2513	 39.00	0	3287892..3288350	+	152	73670073	-	Mbar_A2598	-	hypothetical protein
2514	 45.80	0	3288489..3289916	+	475	73670074	-	Mbar_A2599	-	putrescine-ornithine antiporter
2515	 39.85	0	3290043..3290579	+	178	73670075	-	Mbar_A2600	-	hypothetical protein
2516	 42.38	0	3290886..3291692	+	268	73670076	-	Mbar_A2601	-	hypothetical protein
2517	 35.53	-1	3294551..3295051	+	166	73670077	-	Mbar_A2602	-	hypothetical protein
2518	 35.26	-1	3295056..3296354	+	432	73670078	-	Mbar_A2603	-	hypothetical protein
2519	 35.42	-1	3296434..3299217	-	927	73670079	-	Mbar_A2604	-	TPR repeat-containing protein
2520	 47.84	+1	3299758..3300915	+	385	73670080	-	Mbar_A2605	-	aspartate aminotransferase
2521	 46.46	0	3301110..3301688	-	192	73670081	-	Mbar_A2606	-	hypothetical protein
2522	 51.53	+2	3303132..3304538	+	468	73670082	-	Mbar_A2608	-	hypothetical protein
2523	 47.57	+1	3304981..3306174	-	397	73670083	-	Mbar_A2609	-	mRNA 3-end processing factor
2524	 39.39	0	3306289..3306651	+	120	73670084	-	Mbar_A2610	-	hypothetical protein
2525	 43.94	0	3306692..3306955	+	87	73670085	-	Mbar_A2611	-	hypothetical protein
2526	 36.55	-1	3307033..3307281	-	82	73670086	-	Mbar_A2612	-	hypothetical protein
2527	 41.11	0	3307250..3307519	-	89	73670087	-	Mbar_A2613	-	hypothetical protein
2528	 41.59	0	3307613..3307939	+	108	73670088	-	Mbar_A2614	-	hypothetical protein
2529	 41.87	0	3308261..3309103	-	280	73670089	-	Mbar_A2615	-	ATP-binding protein involved in chromosome partitioning
2530	 44.17	0	3310345..3311304	+	319	73670090	-	Mbar_A2616	-	hypothetical protein
2531	 45.13	0	3311304..3311642	+	112	73670091	-	Mbar_A2617	-	branched chain amino acid transport protein AzlD
2532	 45.22	0	3311954..3312811	+	285	73670092	-	Mbar_A2618	-	sulfite reductase, beta subunit
2533	 39.09	0	3313304..3313807	+	167	73670093	-	Mbar_A2619	-	hypothetical protein
2534	 39.44	0	3313894..3314613	+	239	73670094	-	Mbar_A2620	-	hypothetical protein
2535	 32.91	-1	3314883..3318677	-	1264	73670095	-	Mbar_A2621	-	hypothetical protein
2536	 42.72	0	3319274..3319486	-	70	73670096	-	Mbar_A2622	-	hypothetical protein
2537	 47.29	+1	3321011..3321361	-	116	73670097	-	Mbar_A2624	-	hypothetical protein
2538	 44.79	0	3322131..3322619	+	162	73670098	-	Mbar_A2625	-	hypothetical protein
2539	 41.00	0	3323109..3323447	+	112	73670099	-	Mbar_A2626	-	6-pyruvoyltetrahydropterin synthase
2540	 46.44	0	3323605..3324672	-	355	73670100	-	Mbar_A2627	-	hypothetical protein
2541	 38.83	0	3324871..3325143	+	90	73670101	-	Mbar_A2628	-	hypothetical protein
2542	 43.49	0	3326036..3326557	+	173	73670102	-	Mbar_A2630	-	hypothetical protein
2543	 34.83	-1	3328164..3328898	+	244	73670103	-	Mbar_A2631	-	hypothetical protein
2544	 46.11	0	3329689..3331269	+	526	73670104	-	Mbar_A2632	-	phosphoenolpyruvate carboxylase
2545	 38.75	0	3331390..3332127	-	245	73670105	-	Mbar_A2633	-	cell surface protein
2546	 35.54	-1	3332704..3333246	-	180	73670106	-	Mbar_A2635	-	hypothetical protein
2547	 47.60	+1	3333890..3335326	+	478	73670107	-	Mbar_A2636	-	integral membrane protein
2548	 39.00	0	3336701..3337159	+	152	73670108	-	Mbar_A2637	-	MarR family transcriptional regulator
2549	 37.39	0	3337877..3338344	-	155	73670109	-	Mbar_A2638	-	transposase
2550	 43.97	0	3338894..3340096	+	400	73670110	-	Mbar_A2639	-	aldo/keto reductase
2551	 36.21	-1	3340409..3341902	-	497	73670111	-	Mbar_A2640	-	hypothetical protein
2552	 37.00	0	3342272..3342598	-	108	73670112	-	Mbar_A2641	-	hypothetical protein
2553	 43.01	0	3342723..3344438	-	571	73670113	-	Mbar_A2642	-	hypothetical protein
2554	 45.60	0	3344599..3346074	-	491	73670114	-	Mbar_A2643	-	DNA repair helicase RAD25
2555	 36.69	-1	3346647..3347033	+	128	73670115	-	Mbar_A2644	-	hypothetical protein
2556	 39.68	0	3347178..3347366	+	62	73670116	-	Mbar_A2645	-	hypothetical protein
2557	 43.13	0	3348875..3351508	-	877	73670117	-	Mbar_A2646	-	hypothetical protein
2558	 43.21	0	3351505..3353508	-	667	73670118	-	Mbar_A2647	-	hypothetical protein
2559	 42.18	0	3353517..3354443	-	308	73670119	-	Mbar_A2648	-	hypothetical protein
2560	 44.90	0	3354619..3355638	-	339	73670120	-	Mbar_A2649	-	moxR-like ATPase
2561	 38.60	0	3355655..3356509	-	284	73670121	-	Mbar_A2650	-	hypothetical protein
2562	 24.55	-2	3357006..3358223	+	405	73670122	-	Mbar_A2651	-	hypothetical protein
2563	 33.51	-1	3358595..3361354	-	919	73670123	-	Mbar_A2652	-	hypothetical protein
2564	 50.08	+1	3362031..3362675	-	214	73670124	-	Mbar_A2653	-	ABC transporter, ATP-binding protein
2565	 46.35	0	3362864..3364069	-	401	73670125	-	Mbar_A2654	-	ABC transporter, permease protein
2566	 43.50	0	3364315..3365868	-	517	73670126	-	Mbar_A2655	-	hypothetical protein
2567	 46.76	+1	3366189..3367469	-	426	73670127	-	Mbar_A2656	-	Na(+)-linked D-alanine glycine permease
2568	 34.88	-1	3367842..3368099	+	85	73670128	-	Mbar_A2657	-	hypothetical protein
2569	 42.42	0	3368258..3368851	-	197	73670129	-	Mbar_A2658	-	hypothetical protein
2570	 39.02	0	3369234..3369497	-	87	73670130	-	Mbar_A2659	-	hypothetical protein
2571	 42.47	0	3369590..3369808	-	72	73670131	-	Mbar_A2660	-	hypothetical protein
2572	 37.59	0	3369805..3369945	-	46	73670132	-	Mbar_A2661	-	hypothetical protein
2573	 40.76	0	3370021..3373251	-	1076	73670133	-	Mbar_A2662	-	putative type I restriction enzyme R protein
2574	 33.59	-1	3373408..3374172	+	254	73670134	-	Mbar_A2663	-	hypothetical protein
2575	 38.57	0	3374459..3375031	-	190	73670135	-	Mbar_A2664	-	hypothetical protein
2576	 34.60	-1	3375000..3376340	-	446	73670136	-	Mbar_A2665	-	type I restriction-modification system specificity subunit
2577	 45.65	0	3376340..3377866	-	508	73670137	-	Mbar_A2666	-	type I restriction-modification system specificity subunit
2578	 44.65	0	3378199..3378516	+	105	73670138	-	Mbar_A2667	-	hypothetical protein
2579	 44.56	0	3378757..3379878	-	373	73670139	-	Mbar_A2668	-	hypothetical protein
2580	 49.02	+1	3382454..3382963	-	169	73670140	-	Mbar_A2669	-	hypothetical protein
2581	 39.15	0	3383206..3385113	-	635	73670141	-	Mbar_A2670	-	hypothetical protein
41.74	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.