IslandPathversion 1.0

IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.74 STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2402	 42.01	0	3136794..3137531	-	245	73669962	-	Mbar_A2484	-	hypothetical protein
2403	 42.97	0	3137786..3138553	-	255	73669963	-	Mbar_A2485	-	hypothetical protein
2404	 42.74	0	3138540..3139496	-	318	73669964	-	Mbar_A2486	-	ATP-binding protein
2405	 41.49	0	3139677..3139958	-	93	73669965	-	Mbar_A2487	-	hypothetical protein
2406	 40.74	0	3139955..3140143	-	62	73669966	-	Mbar_A2488	-	hypothetical protein
2407	 38.97	0	3140733..3141122	-	129	73669967	-	Mbar_A2489	-	hypothetical protein
2408	 45.58	0	3141667..3143577	+	636	73669968	-	Mbar_A2490	-	hydantoinase
2409	 45.87	0	3143976..3146081	+	701	73669969	-	Mbar_A2491	-	hydantoinase
2410	 44.14	0	3146390..3146935	+	181	73669970	-	Mbar_A2492	-	pyruvoyl-dependent arginine decarboxylase
2411	 37.57	0	3147171..3149390	-	739	73669971	-	Mbar_A2493	-	hypothetical protein
2412	 35.21	-1	3149485..3150069	-	194	73669972	-	Mbar_A2494	-	hypothetical protein
2413	 33.33	-1	3150398..3151291	-	297	73669973	-	Mbar_A2495	-	hypothetical protein
2414	 37.37	0	3151269..3152210	-	313	73669974	-	Mbar_A2496	-	glycosyltransferase
2415	 36.06	-1	3153386..3155146	+	586	73669975	-	Mbar_A2497	-	hypothetical protein
2416	 32.21	-1	3155339..3155962	+	207	73669976	-	Mbar_A2498	-	hypothetical protein
2417	 50.17	+1	3156228..3156827	+	199	73669977	-	Mbar_A2499	-	50S ribosomal protein L15e
2418	 47.75	+1	3156824..3157267	+	147	73669978	-	Mbar_A2500	-	hypothetical protein
2419	 47.08	+1	3157260..3157979	+	239	73669979	-	Mbar_A2501	-	ribonuclease P protein component 3
2420	 43.63	0	3157976..3158383	+	135	73669980	-	Mbar_A2502	-	putative ribonuclease P subunit P14
2421	 47.73	+1	3159446..3160195	+	249	73669981	-	Mbar_A2503	-	proteasome subunit alpha
2422	 46.32	0	3160274..3160966	+	230	73669982	-	Mbar_A2504	-	putative RNA-associated protein
2423	 42.53	0	3160978..3161760	+	260	73669983	-	Mbar_A2505	-	exosome complex RNA-binding protein Rrp4
2424	 45.22	0	3161834..3163339	+	501	73669984	-	Mbar_A2506	-	exosome complex exonuclease 1
2425	 46.49	0	3163332..3164114	+	260	73669985	-	Mbar_A2507	-	exosome complex RNA-binding protein Rrp42
2426	 49.12	+1	3164297..3164581	+	94	73669986	rpl37ae	Mbar_A2508	-	50S ribosomal protein L37Ae
2427	 43.48	0	3164602..3164739	+	45	73669987	-	Mbar_A2509	-	DNA-directed RNA polymerase subunit P
2428	 41.98	0	3165281..3165754	-	157	73669988	-	Mbar_A2510	-	transcriptional regulator
2429	 35.18	-1	3166635..3167825	+	396	73669989	-	Mbar_A2511	-	transposase
2430	 45.57	0	3168531..3169241	-	236	73669990	-	Mbar_A2512	-	3-oxoacyl-(acyl-carrier protein) reductase
2431	 33.24	-1	3170339..3171421	+	360	73669991	-	Mbar_A2513	-	hypothetical protein
2432	 44.44	0	3171612..3171872	-	86	73669992	-	Mbar_A2514	-	hypothetical protein
2433	 46.00	0	3171980..3172816	-	278	73669993	-	Mbar_A2515	-	ABC transporter, permease protein
2434	 45.76	0	3172820..3173632	-	270	73669994	-	Mbar_A2516	-	multidrug ABC transporter, ATP-binding protein
2435	 43.57	0	3174185..3176509	+	774	73669995	-	Mbar_A2517	-	glycogen debranching enzyme
2436	 43.86	0	3176615..3178315	-	566	73669996	-	Mbar_A2518	-	sulfate transporter
2437	 39.39	0	3179247..3179609	+	120	73669997	-	Mbar_A2519	-	hypothetical protein
2438	 32.53	-1	3180010..3180507	+	165	73669998	-	Mbar_A2520	-	putative acetyltransferase
2439	 34.22	-1	3180725..3181174	+	149	73669999	-	Mbar_A2521	-	hypothetical protein
2440	 40.25	0	3181268..3182482	-	404	73670000	-	Mbar_A2522	-	hypothetical protein
2441	 37.02	0	3182635..3185022	-	795	73670001	-	Mbar_A2523	-	hypothetical protein
2442	 43.87	0	3185115..3185522	+	135	73670002	-	Mbar_A2524	-	hypothetical protein
2443	 30.03	-2	3185541..3185873	-	110	73670003	-	Mbar_A2525	-	hypothetical protein
2444	 39.56	0	3186022..3188220	-	732	73670004	-	Mbar_A2526	-	hypothetical protein
2445	 40.00	0	3188551..3188655	-	34	73670005	-	Mbar_A2527	-	hypothetical protein
2446	 36.90	-1	3188930..3189517	-	195	73670006	-	Mbar_A2528	-	hypothetical protein
2447	 47.44	+1	3190138..3191151	+	337	73670007	-	Mbar_A2529	-	hypothetical protein
2448	 39.58	0	3191869..3192204	+	111	73670008	-	Mbar_A2530	-	hypothetical protein
2449	 42.74	0	3192820..3193776	+	318	73670009	-	Mbar_A2531	-	hypothetical protein
2450	 32.28	-1	3193870..3194058	-	62	73670010	-	Mbar_A2532	-	hypothetical protein
2451	 38.00	0	3194897..3195196	-	99	73670011	-	Mbar_A2533	-	hypothetical protein
2452	 38.27	0	3195397..3195801	-	134	73670012	-	Mbar_A2534	-	hypothetical protein
2453	 50.00	+1	3197608..3197829	+	73	73670013	-	Mbar_A2535	-	DNA-directed RNA polymerase I, II, and III, 7.3 kDa polypeptide
2454	 50.72	+1	3198225..3198431	+	68	73670014	-	Mbar_A2536	-	DNA-directed RNA polymerase I, II, and III, 7.3 kDa polypeptide
2455	 46.74	+1	3199003..3199293	+	96	73670015	-	Mbar_A2537	-	translation initiation factor IF-1A
2456	 46.57	+1	3199867..3200070	+	67	73670016	-	Mbar_A2538	-	hypothetical protein
2457	 42.39	0	3200747..3200989	+	80	73670017	-	Mbar_A2539	-	hypothetical protein
2458	 43.39	0	3201290..3201637	+	115	73670018	-	Mbar_A2540	-	translation initiation factor IF-1A
2459	 45.93	0	3202315..3203949	-	544	73670019	-	Mbar_A2541	-	acetolactate synthase
2460	 43.74	0	3204249..3205613	-	454	73670020	-	Mbar_A2542	-	aldehyde dehydrogenase
2461	 43.12	0	3205903..3206280	+	125	73670021	-	Mbar_A2543	-	acidic integral membrane protein
2462	 45.28	0	3206809..3212475	-	1888	73670022	-	Mbar_A2544	-	hypothetical protein
2463	 41.21	0	3212817..3213743	-	308	73670023	-	Mbar_A2545	-	integral membrane protein
2464	 41.63	0	3214453..3215235	-	260	73670024	-	Mbar_A2546	-	sec-independent protein translocase, protein
2465	 44.57	0	3216096..3216878	+	260	73670025	-	Mbar_A2547	-	sec-independent protein translocase, protein
2466	 45.04	0	3217008..3217400	+	130	73670026	-	Mbar_A2548	-	sec-independent protein translocase, protein
2467	 44.44	0	3217675..3217980	+	101	73670027	-	Mbar_A2549	-	Sec-independent protein translocase TatA
2468	 40.36	0	3218044..3218655	+	203	73670028	-	Mbar_A2550	-	hypothetical protein
2469	 45.26	0	3218843..3219907	-	354	73670029	-	Mbar_A2551	-	pyruvate formate-lyase activating enzyme-like protein
2470	 40.98	0	3220514..3222973	-	819	73670030	-	Mbar_A2552	-	sensory transduction histidine kinase
2471	 42.20	0	3223271..3224545	-	424	73670031	-	Mbar_A2553	-	methyltransferase
2472	 36.03	-1	3225153..3225449	-	98	73670032	-	Mbar_A2554	-	hypothetical protein
2473	 31.08	-2	3225875..3226939	+	354	73670033	-	Mbar_A2555	-	transposase, putative
2474	 35.47	-1	3227276..3227509	+	77	73670034	-	Mbar_A2556	-	hypothetical protein
2475	 44.67	0	3227689..3227988	-	99	73670035	-	Mbar_A2557	-	hypothetical protein
2476	 42.10	0	3228571..3229152	-	193	73670036	-	Mbar_A2558	-	hypothetical protein
2477	 43.42	0	3230507..3231190	-	227	73670037	-	Mbar_A2559	-	molybdate ABC transporter, permease protein
2478	 42.81	0	3231213..3232046	-	277	73670038	-	Mbar_A2560	-	molybdenum ABC transporter, solute-binding protein
2479	 34.30	-1	3232533..3233363	-	276	73670039	-	Mbar_A2561	-	ribonuclease RN
2480	 40.61	0	3234056..3234880	-	274	73670040	-	Mbar_A2562	-	ABC transporter, ATP-binding protein
2481	 43.20	0	3234888..3235769	-	293	73670041	-	Mbar_A2563	-	cobalt transport protein
2482	 47.30	+1	3236402..3236716	-	104	73670042	-	Mbar_A2564	-	cobalamin biosynthesis protein
2483	 43.75	0	3236726..3237445	-	239	73670043	-	Mbar_A2565	-	cobalt transport protein CbiM
2484	 43.89	0	3239024..3240577	-	517	73670044	-	Mbar_A2567	-	heteropolysaccharide repeat-containing protein
2485	 39.95	0	3240599..3241006	-	135	73670045	-	Mbar_A2568	-	hypothetical protein
2486	 42.03	0	3242491..3244008	-	505	73670046	-	Mbar_A2569	-	surface layer protein B
2487	 39.50	0	3244686..3245204	+	172	73670047	-	Mbar_A2570	-	hypothetical protein
2488	 29.60	-2	3246835..3248787	+	650	73670048	-	Mbar_A2572	-	hypothetical protein
2489	 34.10	-1	3248771..3249553	+	260	73670049	-	Mbar_A2573	-	hypothetical protein
2490	 33.33	-1	3250160..3250588	+	142	73670050	-	Mbar_A2574	-	helicase
2491	 39.76	0	3250739..3251158	+	139	73670051	-	Mbar_A2575	-	MarR family transcriptional regulator
2492	 46.41	0	3251244..3253652	+	802	73670052	-	Mbar_A2576	-	ATP-dependent protease La
2493	 40.49	0	3254455..3254943	+	162	73670053	-	Mbar_A2577	-	thioredoxin
2494	 40.12	0	3255324..3257003	-	559	73670054	-	Mbar_A2578	-	2-octaprenylphenol hydroxylase
2495	 42.78	0	3257197..3258096	-	299	73670055	-	Mbar_A2579	-	hypothetical protein
2496	 41.41	0	3258763..3259431	+	222	73670056	-	Mbar_A2580	-	iron-sulfur flavoprotein
2497	 44.86	0	3259601..3260815	-	404	73670057	-	Mbar_A2581	-	membrane transport protein
2498	 43.73	0	3261199..3261996	+	265	73670058	-	Mbar_A2582	-	hypothetical protein
2499	 44.66	0	3262156..3262782	+	208	73670059	-	Mbar_A2583	-	hypothetical protein
2500	 40.62	0	3263043..3264482	-	479	73670060	-	Mbar_A2584	-	surface antigen gene
2501	 30.84	-2	3264650..3265210	-	186	73670061	-	Mbar_A2585	-	hypothetical protein
41.74	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.