IslandPathversion 1.0

IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.74 STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2049	 45.36	0	2669760..2671937	-	725	73669609	-	Mbar_A2113	-	cell surface protein
2050	 36.59	-1	2672423..2672698	+	91	73669610	-	Mbar_A2114	-	hypothetical protein
2051	 46.05	0	2672740..2673195	+	151	73669611	-	Mbar_A2115	-	hypothetical protein
2052	 43.01	0	2673314..2673685	+	123	73669612	-	Mbar_A2116	-	hypothetical protein
2053	 45.76	0	2673678..2674337	+	219	73669613	-	Mbar_A2117	-	hypothetical protein
2054	 33.45	-1	2674489..2675322	-	277	73669614	-	Mbar_A2118	-	hypothetical protein
2055	 39.67	0	2675731..2676030	+	99	73669615	-	Mbar_A2119	-	hypothetical protein
2056	 46.34	0	2676343..2676588	+	81	73669616	-	Mbar_A2120	-	hypothetical protein
2057	 34.16	-1	2676685..2676927	-	80	73669617	-	Mbar_A2121	-	hypothetical protein
2058	 40.18	0	2676928..2677146	-	72	73669618	-	Mbar_A2122	-	hypothetical protein
2059	 33.83	-1	2677655..2678461	+	268	73669619	-	Mbar_A2123	-	hypothetical protein
2060	 35.12	-1	2678534..2678869	-	111	73669620	-	Mbar_A2124	-	hypothetical protein
2061	 48.04	+1	2679348..2680190	+	280	73669621	-	Mbar_A2125	-	metallo-beta-lactamase superfamily protein
2062	 50.36	+1	2680822..2682330	+	502	73669622	-	Mbar_A2126	-	seryl-tRNA synthetase
2063	 47.44	+1	2682948..2683571	+	207	73669623	-	Mbar_A2127	-	30S ribosomal protein S3Ae
2064	 46.11	0	2683737..2686304	-	855	73669624	-	Mbar_A2128	-	DNA topoisomerase, type I
2065	 48.72	+1	2686866..2688152	+	428	73669625	-	Mbar_A2129	-	thiamine biosynthesis protein ThiC
2066	 42.08	0	2689047..2689778	+	243	73669626	-	Mbar_A2130	-	hypothetical protein
2067	 47.10	+1	2690617..2691531	-	304	73669627	-	Mbar_A2131	-	hypothetical protein
2068	 43.20	0	2691712..2692248	+	178	73669628	-	Mbar_A2132	-	diamine acetyltransferase
2069	 39.90	0	2692433..2692843	-	136	73669629	-	Mbar_A2133	-	hypothetical protein
2070	 43.44	0	2694215..2697577	+	1120	73669630	-	Mbar_A2136	-	cell surface protein
2071	 30.90	-2	2698877..2699617	+	246	73669631	-	Mbar_A2137	-	hypothetical protein
2072	 32.95	-1	2699614..2700903	+	429	73669632	-	Mbar_A2138	-	amylovoran biosynthesis AmsK
2073	 32.30	-1	2701180..2702628	-	482	73669633	-	Mbar_A2139	-	polysaccharide biosynthesis protein
2074	 39.08	0	2702695..2703756	-	353	73669634	-	Mbar_A2140	-	UDP-N-acetylglucosamine 2-epimerase
2075	 33.01	-1	2703849..2705099	-	416	73669635	-	Mbar_A2141	-	glycosyltransferase
2076	 44.50	0	2707371..2707925	-	184	73669636	-	Mbar_A2142	-	corrinoid protein
2077	 41.00	0	2707980..2709896	-	638	73669637	-	Mbar_A2143	-	cell surface protein
2078	 42.55	0	2710362..2714876	-	1504	73669638	-	Mbar_A2144	-	hydrogenobyrinic acid a,c-diamide cobaltochelatase
2079	 41.53	0	2715760..2716467	+	235	73669639	-	Mbar_A2145	-	cobalt transport protein CbiM
2080	 40.48	0	2716464..2716799	+	111	73669640	-	Mbar_A2146	-	cobalt transport protein CbiN
2081	 44.09	0	2718106..2719248	+	380	73669641	-	Mbar_A2147	-	cation efflux system protein
2082	 42.66	0	2719370..2720152	+	260	73669642	-	Mbar_A2148	-	cobalt transport protein
2083	 44.20	0	2720164..2721525	+	453	73669643	-	Mbar_A2149	-	cobalt ABC transporter, ATP-binding protein
2084	 40.00	0	2722236..2722415	-	59	73669644	-	Mbar_A2150	-	hypothetical protein
2085	 37.62	0	2723469..2723888	+	139	73669645	-	Mbar_A2151	-	hypothetical protein
2086	 47.46	+1	2726177..2726452	+	91	73669646	-	Mbar_A2152	-	carbon-monoxide dehydrogenase, subunit delta
2087	 36.31	-1	2727658..2728026	+	122	73669647	-	Mbar_A2153	-	hypothetical protein
2088	 44.00	0	2728920..2729144	-	74	73669648	-	Mbar_A2154	-	hypothetical protein
2089	 45.59	0	2730170..2731189	-	339	73669649	-	Mbar_A2155	-	hypothetical protein
2090	 40.56	0	2731541..2731720	-	59	73669650	-	Mbar_A2156	-	hypothetical protein
2091	 48.91	+1	2732076..2732441	-	121	73669651	-	Mbar_A2157	-	hypothetical protein
2092	 43.79	0	2732495..2733814	+	439	73669652	-	Mbar_A2158	-	cobyrinate a,c-diamide synthase / hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing)
2093	 41.99	0	2733874..2734104	-	76	73669653	-	Mbar_A2159	-	hypothetical protein
2094	 43.33	0	2735421..2735600	+	59	73669654	-	Mbar_A2160	-	translation initiation factor IF-1A
2095	 44.27	0	2735931..2736122	+	63	73669655	-	Mbar_A2161	-	hypothetical protein
2096	 36.48	-1	2737573..2737890	+	105	73669656	-	Mbar_A2163	-	transposase
2097	 42.61	0	2738107..2739108	-	333	73669657	-	Mbar_A2164	-	GTP-binding protein
2098	 41.89	0	2739467..2740342	+	291	73669658	-	Mbar_A2165	-	hypothetical protein
2099	 40.95	0	2740524..2740838	-	104	73669659	-	Mbar_A2166	-	phosphoribosyl-ATP pyrophosphatase
2100	 46.99	+1	2740926..2742221	-	431	73669660	-	Mbar_A2167	-	3-isopropylmalate dehydratase, large subunit
2101	 44.49	0	2742373..2743179	-	268	73669661	-	Mbar_A2168	-	hypothetical protein
2102	 44.64	0	2743336..2743839	+	167	73669662	-	Mbar_A2169	-	hypothetical protein
2103	 41.83	0	2743988..2745565	-	525	73669663	-	Mbar_A2170	-	hypothetical protein
2104	 41.08	0	2746246..2746800	+	184	73669664	-	Mbar_A2171	-	transcriptional regulator
2105	 44.52	0	2747231..2748910	+	559	73669665	-	Mbar_A2172	-	AMP-binding protein
2106	 46.18	0	2749526..2749774	+	82	73669666	-	Mbar_A2173	-	ketoisovalerate ferredoxin oxidoreductase, delta subunit
2107	 46.40	0	2749795..2750850	+	351	73669667	-	Mbar_A2174	-	2-ketoisovalerate ferredoxin reductase
2108	 47.99	+1	2750853..2752298	+	481	73669668	-	Mbar_A2175	-	ketoisovalerate ferredoxin oxidoreductase, gamma subunit
2109	 41.33	0	2753923..2754222	+	99	73669669	-	Mbar_A2176	-	hypothetical protein
2110	 43.14	0	2754230..2755402	-	390	73669670	-	Mbar_A2177	-	ornithine decarboxylase
2111	 42.24	0	2755929..2757197	-	422	73669671	-	Mbar_A2178	-	amino acid transporter
2112	 45.85	0	2757512..2758693	-	393	73669672	-	Mbar_A2179	-	flavodoxin
2113	 46.75	+1	2759153..2760673	+	506	73669673	-	Mbar_A2180	-	L-glutamine synthetase
2114	 44.30	0	2761168..2762088	+	306	73669674	-	Mbar_A2181	-	hypothetical protein
2115	 45.18	0	2762179..2762541	+	120	73669675	-	Mbar_A2182	-	hypothetical protein
2116	 45.33	0	2763348..2766290	+	980	73669676	-	Mbar_A2183	-	hypothetical protein
2117	 37.57	0	2767040..2769070	+	676	73669677	-	Mbar_A2184	-	hypothetical protein
2118	 43.69	0	2769471..2769866	+	131	73669678	-	Mbar_A2185	-	hypothetical protein
2119	 40.74	0	2770080..2770241	-	53	73669679	-	Mbar_A2186	-	hypothetical protein
2120	 42.52	0	2770618..2771499	+	293	73669680	-	Mbar_A2187	-	hypothetical protein
2121	 44.97	0	2771774..2771962	+	62	73669681	-	Mbar_A2188	-	hypothetical protein
2122	 45.82	0	2772516..2773532	+	338	73669682	-	Mbar_A2189	-	glyceraldehyde-3-phosphate dehydrogenase
2123	 45.23	0	2773763..2774569	+	268	73669683	-	Mbar_A2190	-	bifunctional inositol-1 monophosphatase/fructose-1,6-bisphosphatase
2124	 45.65	0	2774571..2775398	+	275	73669684	-	Mbar_A2191	-	inorganic polyphosphate/ATP-NAD kinase
2125	 46.80	+1	2775975..2777192	+	405	73669685	aksA	Mbar_A2192	-	trans-homoaconitate synthase
2126	 41.83	0	2777281..2778186	-	301	73669686	-	Mbar_A2193	-	hypothetical protein
2127	 44.28	0	2778297..2780726	-	809	73669687	-	Mbar_A2194	-	hypothetical protein
2128	 43.33	0	2781120..2783570	-	816	73669688	-	Mbar_A2195	-	hypothetical protein
2129	 43.91	0	2783883..2786312	-	809	73669689	-	Mbar_A2196	-	hypothetical protein
2130	 40.37	0	2788228..2790471	+	747	73669690	-	Mbar_A2198	-	hypothetical protein
2131	 28.00	-2	2791659..2791808	-	49	73669691	-	Mbar_A2199	-	hypothetical protein
2132	 37.35	0	2792243..2792491	+	82	73669692	-	Mbar_A2200	-	hypothetical protein
2133	 38.69	0	2792488..2792823	+	111	73669693	-	Mbar_A2201	-	hypothetical protein
2134	 27.96	-2	2793079..2793264	-	61	73669694	-	Mbar_A2202	-	transposase
2135	 42.25	0	2794912..2795898	+	328	73669695	-	Mbar_A2204	-	putative magnesium chelatase
2136	 39.73	0	2796003..2796878	+	291	73669696	-	Mbar_A2205	-	hypothetical protein
2137	 38.26	0	2796880..2797833	+	317	73669697	-	Mbar_A2206	-	BatA
2138	 39.05	0	2797830..2799404	+	524	73669698	-	Mbar_A2207	-	hypothetical protein
2139	 37.84	0	2801727..2803034	+	435	73669699	-	Mbar_A2208	-	transposase
2140	 33.97	-1	2802984..2804231	-	415	73669700	-	Mbar_A2209	-	DNA methylase (modification methylase) (methyltransferase)
2141	 29.71	-2	2804744..2807254	-	836	73669701	-	Mbar_A2210	-	type II restriction enzyme, methylase subunit
2142	 34.15	-1	2807311..2807799	-	162	73669702	-	Mbar_A2211	-	hypothetical protein
2143	 29.55	-2	2808173..2808463	-	96	73669703	-	Mbar_A2212	-	hypothetical protein
2144	 48.75	+1	2808994..2810433	+	479	73669704	-	Mbar_A2213	-	heme biosynthesis protein (NirJ-2)
2145	 43.19	0	2810800..2812524	+	574	73669705	-	Mbar_A2214	-	2-oxoacid ferredoxin oxidoreductase, subunit alpha
2146	 45.77	0	2812511..2813362	+	283	73669706	-	Mbar_A2215	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
2147	 40.13	0	2813830..2814873	-	347	73669707	-	Mbar_A2216	-	integral membrane protein
2148	 34.94	-1	2815394..2816449	+	351	73669708	-	Mbar_A2217	-	hypothetical protein
41.74	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.