IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 41.74   STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2004	 39.97	0	2611507..2612304	+	265	73669564	-	Mbar_A2068	-	hypothetical protein
2005	 47.71	+1	2613069..2614730	-	553	73669565	-	Mbar_A2069	-	dihydroxy-acid dehydratase
2006	 40.90	0	2616141..2617925	+	594	73669566	-	Mbar_A2070	-	sensory transduction histidine kinase
2007	 43.95	0	2618138..2618608	+	156	73669567	-	Mbar_A2071	-	flavodoxin
2008	 46.20	0	2619024..2619956	-	310	73669568	-	Mbar_A2072	-	tetrahydromethanopterin S-methyltransferase subunit H
2009	 43.43	0	2620071..2620664	-	197	73669569	-	Mbar_A2073	-	tetrahydromethanopterin S-methyltransferase subunit A
2010	 47.90	+1	2620661..2621518	-	285	73669570	-	Mbar_A2074	-	N5-methyl-tetrahydromethanopterin:coenzyme M methyltransferase subunit X
2011	 45.62	0	2622097..2624025	+	642	73669571	-	Mbar_A2075	-	replication factor C large subunit
2012	 33.97	-1	2626604..2626918	+	104	73669572	-	Mbar_A2076	-	hypothetical protein
2013	 42.86	0	2627191..2627841	+	216	73669573	-	Mbar_A2077	-	BRAMP
2014	 46.07	0	2627920..2630211	+	763	73669574	-	Mbar_A2078	-	cell division cycle protein
2015	 43.85	0	2630573..2631133	+	186	73669575	-	Mbar_A2079	-	XRE family transcriptional regulator
2016	 46.27	0	2631590..2632741	+	383	73669576	-	Mbar_A2080	-	phosphoserine aminotransferase / L-aspartate aminotransferase
2017	 44.95	0	2632843..2633307	+	154	73669577	-	Mbar_A2081	-	riboflavin synthase
2018	 48.64	+1	2633346..2633750	+	134	73669578	ribH	Mbar_A2082	-	riboflavin synthase subunit beta
2019	 44.97	0	2633797..2634939	+	380	73669579	-	Mbar_A2083	-	aspartate aminotransferase
2020	 44.29	0	2635029..2635448	-	139	73669580	-	Mbar_A2084	-	glycerol-3-phosphate cytidyltransferase
2021	 45.84	0	2635811..2637313	+	500	73669581	-	Mbar_A2085	-	hypothetical protein
2022	 42.12	0	2637316..2637702	+	128	73669582	-	Mbar_A2086	-	ferredoxin
2023	 45.85	0	2638168..2638974	+	268	73669583	-	Mbar_A2087	-	thymidylate synthase
2024	 35.91	-1	2639313..2639777	-	154	73669584	-	Mbar_A2088	-	hypothetical protein
2025	 40.77	0	2640600..2640962	+	120	73669585	-	Mbar_A2089	-	hypothetical protein
2026	 39.07	0	2641044..2641949	-	301	73669586	-	Mbar_A2090	-	hypothetical protein
2027	 41.90	0	2642346..2643653	+	435	73669587	-	Mbar_A2091	-	hypothetical protein
2028	 43.17	0	2643974..2644705	+	243	73669588	-	Mbar_A2092	-	Ala-tRNA(Pro) hydrolase
2029	 38.76	0	2644851..2645882	-	343	73669589	-	Mbar_A2093	-	sodium/calcium exchanger protein
2030	 39.68	0	2647021..2647209	+	62	73669590	-	Mbar_A2094	-	hypothetical protein
2031	 40.21	0	2647228..2647416	+	62	73669591	-	Mbar_A2095	-	hypothetical protein
2032	 50.26	+1	2648196..2648390	+	64	73669592	-	Mbar_A2096	-	hypothetical protein
2033	 40.96	0	2648648..2649001	-	117	73669593	-	Mbar_A2097	-	hypothetical protein
2034	 45.63	0	2649046..2649606	-	186	73669594	-	Mbar_A2098	-	hypothetical protein
2035	 40.88	0	2650028..2650345	-	105	73669595	-	Mbar_A2099	-	hypothetical protein
2036	 49.43	+1	2650514..2651296	+	260	73669596	-	Mbar_A2100	-	ribulose-1,5-biphosphate synthetase
2037	 48.03	+1	2651733..2653460	+	575	73669597	-	Mbar_A2101	-	hypothetical protein
2038	 39.44	0	2653761..2653973	+	70	73669598	-	Mbar_A2102	-	hypothetical protein
2039	 41.83	0	2654030..2656558	-	842	73669599	-	Mbar_A2103	-	magnesium transport P-type atpase
2040	 40.97	0	2656592..2657665	-	357	73669600	-	Mbar_A2104	-	hypothetical protein
2041	 43.32	0	2658669..2661821	+	1050	73669601	-	Mbar_A2105	-	hypothetical protein
2042	 42.09	0	2661906..2662670	+	254	73669602	-	Mbar_A2106	-	hypothetical protein
2043	 44.24	0	2662726..2663550	+	274	73669603	-	Mbar_A2107	-	hypothetical protein
2044	 46.43	0	2663547..2664668	+	373	73669604	-	Mbar_A2108	-	hypothetical protein
2045	 39.09	0	2665469..2666563	+	364	73669605	-	Mbar_A2109	-	hypothetical protein
2046	 29.22	-2	2666995..2667432	+	145	73669606	-	Mbar_A2110	-	hypothetical protein
2047	 46.73	+1	2667813..2669171	+	452	73669607	-	Mbar_A2111	-	hypothetical protein
2048	 38.82	0	2669255..2669509	+	84	73669608	-	Mbar_A2112	-	hypothetical protein
2049	 45.36	0	2669760..2671937	-	725	73669609	-	Mbar_A2113	-	cell surface protein
2050	 36.59	-1	2672423..2672698	+	91	73669610	-	Mbar_A2114	-	hypothetical protein
2051	 46.05	0	2672740..2673195	+	151	73669611	-	Mbar_A2115	-	hypothetical protein
2052	 43.01	0	2673314..2673685	+	123	73669612	-	Mbar_A2116	-	hypothetical protein
2053	 45.76	0	2673678..2674337	+	219	73669613	-	Mbar_A2117	-	hypothetical protein
2054	 33.45	-1	2674489..2675322	-	277	73669614	-	Mbar_A2118	-	hypothetical protein
2055	 39.67	0	2675731..2676030	+	99	73669615	-	Mbar_A2119	-	hypothetical protein
2056	 46.34	0	2676343..2676588	+	81	73669616	-	Mbar_A2120	-	hypothetical protein
2057	 34.16	-1	2676685..2676927	-	80	73669617	-	Mbar_A2121	-	hypothetical protein
2058	 40.18	0	2676928..2677146	-	72	73669618	-	Mbar_A2122	-	hypothetical protein
2059	 33.83	-1	2677655..2678461	+	268	73669619	-	Mbar_A2123	-	hypothetical protein
2060	 35.12	-1	2678534..2678869	-	111	73669620	-	Mbar_A2124	-	hypothetical protein
2061	 48.04	+1	2679348..2680190	+	280	73669621	-	Mbar_A2125	-	metallo-beta-lactamase superfamily protein
2062	 50.36	+1	2680822..2682330	+	502	73669622	-	Mbar_A2126	-	seryl-tRNA synthetase
2063	 47.44	+1	2682948..2683571	+	207	73669623	-	Mbar_A2127	-	30S ribosomal protein S3Ae
2064	 46.11	0	2683737..2686304	-	855	73669624	-	Mbar_A2128	-	DNA topoisomerase, type I
2065	 48.72	+1	2686866..2688152	+	428	73669625	-	Mbar_A2129	-	thiamine biosynthesis protein ThiC
2066	 42.08	0	2689047..2689778	+	243	73669626	-	Mbar_A2130	-	hypothetical protein
2067	 47.10	+1	2690617..2691531	-	304	73669627	-	Mbar_A2131	-	hypothetical protein
2068	 43.20	0	2691712..2692248	+	178	73669628	-	Mbar_A2132	-	diamine acetyltransferase
2069	 39.90	0	2692433..2692843	-	136	73669629	-	Mbar_A2133	-	hypothetical protein
2070	 43.44	0	2694215..2697577	+	1120	73669630	-	Mbar_A2136	-	cell surface protein
2071	 30.90	-2	2698877..2699617	+	246	73669631	-	Mbar_A2137	-	hypothetical protein
2072	 32.95	-1	2699614..2700903	+	429	73669632	-	Mbar_A2138	-	amylovoran biosynthesis AmsK
2073	 32.30	-1	2701180..2702628	-	482	73669633	-	Mbar_A2139	-	polysaccharide biosynthesis protein
2074	 39.08	0	2702695..2703756	-	353	73669634	-	Mbar_A2140	-	UDP-N-acetylglucosamine 2-epimerase
2075	 33.01	-1	2703849..2705099	-	416	73669635	-	Mbar_A2141	-	glycosyltransferase
2076	 44.50	0	2707371..2707925	-	184	73669636	-	Mbar_A2142	-	corrinoid protein
2077	 41.00	0	2707980..2709896	-	638	73669637	-	Mbar_A2143	-	cell surface protein
2078	 42.55	0	2710362..2714876	-	1504	73669638	-	Mbar_A2144	-	hydrogenobyrinic acid a,c-diamide cobaltochelatase
2079	 41.53	0	2715760..2716467	+	235	73669639	-	Mbar_A2145	-	cobalt transport protein CbiM
2080	 40.48	0	2716464..2716799	+	111	73669640	-	Mbar_A2146	-	cobalt transport protein CbiN
2081	 44.09	0	2718106..2719248	+	380	73669641	-	Mbar_A2147	-	cation efflux system protein
2082	 42.66	0	2719370..2720152	+	260	73669642	-	Mbar_A2148	-	cobalt transport protein
2083	 44.20	0	2720164..2721525	+	453	73669643	-	Mbar_A2149	-	cobalt ABC transporter, ATP-binding protein
2084	 40.00	0	2722236..2722415	-	59	73669644	-	Mbar_A2150	-	hypothetical protein
2085	 37.62	0	2723469..2723888	+	139	73669645	-	Mbar_A2151	-	hypothetical protein
2086	 47.46	+1	2726177..2726452	+	91	73669646	-	Mbar_A2152	-	carbon-monoxide dehydrogenase, subunit delta
2087	 36.31	-1	2727658..2728026	+	122	73669647	-	Mbar_A2153	-	hypothetical protein
2088	 44.00	0	2728920..2729144	-	74	73669648	-	Mbar_A2154	-	hypothetical protein
2089	 45.59	0	2730170..2731189	-	339	73669649	-	Mbar_A2155	-	hypothetical protein
2090	 40.56	0	2731541..2731720	-	59	73669650	-	Mbar_A2156	-	hypothetical protein
2091	 48.91	+1	2732076..2732441	-	121	73669651	-	Mbar_A2157	-	hypothetical protein
2092	 43.79	0	2732495..2733814	+	439	73669652	-	Mbar_A2158	-	cobyrinate a,c-diamide synthase / hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing)
2093	 41.99	0	2733874..2734104	-	76	73669653	-	Mbar_A2159	-	hypothetical protein
2094	 43.33	0	2735421..2735600	+	59	73669654	-	Mbar_A2160	-	translation initiation factor IF-1A
2095	 44.27	0	2735931..2736122	+	63	73669655	-	Mbar_A2161	-	hypothetical protein
2096	 36.48	-1	2737573..2737890	+	105	73669656	-	Mbar_A2163	-	transposase
2097	 42.61	0	2738107..2739108	-	333	73669657	-	Mbar_A2164	-	GTP-binding protein
2098	 41.89	0	2739467..2740342	+	291	73669658	-	Mbar_A2165	-	hypothetical protein
2099	 40.95	0	2740524..2740838	-	104	73669659	-	Mbar_A2166	-	phosphoribosyl-ATP pyrophosphatase
2100	 46.99	+1	2740926..2742221	-	431	73669660	-	Mbar_A2167	-	3-isopropylmalate dehydratase, large subunit
2101	 44.49	0	2742373..2743179	-	268	73669661	-	Mbar_A2168	-	hypothetical protein
2102	 44.64	0	2743336..2743839	+	167	73669662	-	Mbar_A2169	-	hypothetical protein
2103	 41.83	0	2743988..2745565	-	525	73669663	-	Mbar_A2170	-	hypothetical protein
41.74	MEAN

4.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.