IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 41.74   STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1967	 38.26	0	2562582..2563292	-	236	73669527	-	Mbar_A2028	-	ABC transporter, ATP-binding protein
1968	 41.85	0	2563280..2564347	-	355	73669528	-	Mbar_A2029	-	ABC transporter, ATP-binding protein
1969	 41.53	0	2564344..2565246	-	300	73669529	-	Mbar_A2030	-	ABC transporter, permease protein
1970	 42.99	0	2565239..2566180	-	313	73669530	-	Mbar_A2031	-	ABC transporter, permease protein
1971	 42.98	0	2566416..2567990	-	524	73669531	-	Mbar_A2032	-	ABC transporter, periplasmic binding protein
1972	 42.35	0	2568620..2569528	+	302	73669532	-	Mbar_A2033	-	methyltransferase
1973	 45.05	0	2570750..2570971	+	73	73669533	-	Mbar_A2034	-	hypothetical protein
1974	 42.60	0	2571169..2571729	-	186	73669534	-	Mbar_A2035	-	hypothetical protein
1975	 44.74	0	2572158..2572946	-	262	73669535	-	Mbar_A2036	-	hypothetical protein
1976	 41.19	0	2572946..2573467	-	173	73669536	-	Mbar_A2037	-	ArsR family transcriptional regulator
1977	 45.66	0	2573528..2574565	-	345	73669537	-	Mbar_A2038	-	putative deoxyhypusine synthase
1978	 42.57	0	2574867..2575364	-	165	73669538	-	Mbar_A2039	-	pyruvoyl-dependent arginine decarboxylase
1979	 45.01	0	2575848..2576498	+	216	73669539	-	Mbar_A2040	-	hypothetical protein
1980	 48.67	+1	2577387..2578886	+	499	73669540	-	Mbar_A2041	-	hypothetical protein
1981	 50.80	+1	2579156..2579905	+	249	73669541	-	Mbar_A2042	-	glycerol uptake facilitator, MIP channel
1982	 34.86	-1	2580293..2581405	+	370	73669542	-	Mbar_A2043	-	transposase
1983	 43.52	0	2581859..2582722	+	287	73669543	-	Mbar_A2044	-	putative amidohydrolase
1984	 36.53	-1	2583285..2584160	+	291	73669544	-	Mbar_A2045	-	hypothetical protein
1985	 35.71	-1	2584161..2585507	+	448	73669545	-	Mbar_A2046	-	hypothetical protein
1986	 34.93	-1	2585904..2586845	-	313	73669546	-	Mbar_A2047	-	hypothetical protein
1987	 47.16	+1	2587242..2590142	-	966	73669547	leuS	Mbar_A2048	-	leucyl-tRNA synthetase
1988	 46.63	+1	2590508..2591725	-	405	73669548	-	Mbar_A2049	-	threonine synthase
1989	 34.72	-1	2592235..2592594	-	119	73669549	-	Mbar_A2050	-	hypothetical protein
1990	 36.34	-1	2592796..2593128	-	110	73669550	-	Mbar_A2051	-	hypothetical protein
1991	 42.74	0	2593578..2594513	-	311	73669551	-	Mbar_A2052	-	hypothetical protein
1992	 47.54	+1	2595028..2597898	-	956	73669552	-	Mbar_A2053	-	membrane alanine aminopeptidase
1993	 35.86	-1	2598769..2599797	+	342	73669553	-	Mbar_A2054	-	hypothetical protein
1994	 43.56	0	2600017..2600544	-	175	73669554	-	Mbar_A2055	-	hypothetical protein
1995	 43.33	0	2601175..2601414	+	79	73669555	-	Mbar_A2056	-	hypothetical protein
1996	 41.92	0	2601860..2602150	+	96	73669556	-	Mbar_A2057	-	hypothetical protein
1997	 42.58	0	2602412..2603233	+	273	73669557	-	Mbar_A2058	-	hypothetical protein
1998	 39.86	0	2603412..2603702	+	96	73669558	-	Mbar_A2059	-	hypothetical protein
1999	 44.51	0	2604014..2604550	+	178	73669559	-	Mbar_A2060	-	formaldehyde-activating enzyme
2000	 37.07	0	2606565..2607314	+	249	73669560	-	Mbar_A2063	-	hypothetical protein
2001	 37.38	0	2607346..2608086	+	246	73669561	-	Mbar_A2064	-	hypothetical protein
2002	 28.21	-2	2608779..2609207	+	142	73669562	-	Mbar_A2065	-	hypothetical protein
2003	 42.40	0	2610653..2611060	+	135	73669563	-	Mbar_A2067	-	hypothetical protein
2004	 39.97	0	2611507..2612304	+	265	73669564	-	Mbar_A2068	-	hypothetical protein
2005	 47.71	+1	2613069..2614730	-	553	73669565	-	Mbar_A2069	-	dihydroxy-acid dehydratase
2006	 40.90	0	2616141..2617925	+	594	73669566	-	Mbar_A2070	-	sensory transduction histidine kinase
2007	 43.95	0	2618138..2618608	+	156	73669567	-	Mbar_A2071	-	flavodoxin
2008	 46.20	0	2619024..2619956	-	310	73669568	-	Mbar_A2072	-	tetrahydromethanopterin S-methyltransferase subunit H
2009	 43.43	0	2620071..2620664	-	197	73669569	-	Mbar_A2073	-	tetrahydromethanopterin S-methyltransferase subunit A
2010	 47.90	+1	2620661..2621518	-	285	73669570	-	Mbar_A2074	-	N5-methyl-tetrahydromethanopterin:coenzyme M methyltransferase subunit X
2011	 45.62	0	2622097..2624025	+	642	73669571	-	Mbar_A2075	-	replication factor C large subunit
2012	 33.97	-1	2626604..2626918	+	104	73669572	-	Mbar_A2076	-	hypothetical protein
2013	 42.86	0	2627191..2627841	+	216	73669573	-	Mbar_A2077	-	BRAMP
2014	 46.07	0	2627920..2630211	+	763	73669574	-	Mbar_A2078	-	cell division cycle protein
2015	 43.85	0	2630573..2631133	+	186	73669575	-	Mbar_A2079	-	XRE family transcriptional regulator
2016	 46.27	0	2631590..2632741	+	383	73669576	-	Mbar_A2080	-	phosphoserine aminotransferase / L-aspartate aminotransferase
2017	 44.95	0	2632843..2633307	+	154	73669577	-	Mbar_A2081	-	riboflavin synthase
2018	 48.64	+1	2633346..2633750	+	134	73669578	ribH	Mbar_A2082	-	riboflavin synthase subunit beta
2019	 44.97	0	2633797..2634939	+	380	73669579	-	Mbar_A2083	-	aspartate aminotransferase
2020	 44.29	0	2635029..2635448	-	139	73669580	-	Mbar_A2084	-	glycerol-3-phosphate cytidyltransferase
2021	 45.84	0	2635811..2637313	+	500	73669581	-	Mbar_A2085	-	hypothetical protein
2022	 42.12	0	2637316..2637702	+	128	73669582	-	Mbar_A2086	-	ferredoxin
2023	 45.85	0	2638168..2638974	+	268	73669583	-	Mbar_A2087	-	thymidylate synthase
2024	 35.91	-1	2639313..2639777	-	154	73669584	-	Mbar_A2088	-	hypothetical protein
2025	 40.77	0	2640600..2640962	+	120	73669585	-	Mbar_A2089	-	hypothetical protein
2026	 39.07	0	2641044..2641949	-	301	73669586	-	Mbar_A2090	-	hypothetical protein
2027	 41.90	0	2642346..2643653	+	435	73669587	-	Mbar_A2091	-	hypothetical protein
2028	 43.17	0	2643974..2644705	+	243	73669588	-	Mbar_A2092	-	Ala-tRNA(Pro) hydrolase
2029	 38.76	0	2644851..2645882	-	343	73669589	-	Mbar_A2093	-	sodium/calcium exchanger protein
2030	 39.68	0	2647021..2647209	+	62	73669590	-	Mbar_A2094	-	hypothetical protein
2031	 40.21	0	2647228..2647416	+	62	73669591	-	Mbar_A2095	-	hypothetical protein
2032	 50.26	+1	2648196..2648390	+	64	73669592	-	Mbar_A2096	-	hypothetical protein
2033	 40.96	0	2648648..2649001	-	117	73669593	-	Mbar_A2097	-	hypothetical protein
2034	 45.63	0	2649046..2649606	-	186	73669594	-	Mbar_A2098	-	hypothetical protein
2035	 40.88	0	2650028..2650345	-	105	73669595	-	Mbar_A2099	-	hypothetical protein
2036	 49.43	+1	2650514..2651296	+	260	73669596	-	Mbar_A2100	-	ribulose-1,5-biphosphate synthetase
2037	 48.03	+1	2651733..2653460	+	575	73669597	-	Mbar_A2101	-	hypothetical protein
2038	 39.44	0	2653761..2653973	+	70	73669598	-	Mbar_A2102	-	hypothetical protein
2039	 41.83	0	2654030..2656558	-	842	73669599	-	Mbar_A2103	-	magnesium transport P-type atpase
2040	 40.97	0	2656592..2657665	-	357	73669600	-	Mbar_A2104	-	hypothetical protein
2041	 43.32	0	2658669..2661821	+	1050	73669601	-	Mbar_A2105	-	hypothetical protein
2042	 42.09	0	2661906..2662670	+	254	73669602	-	Mbar_A2106	-	hypothetical protein
2043	 44.24	0	2662726..2663550	+	274	73669603	-	Mbar_A2107	-	hypothetical protein
2044	 46.43	0	2663547..2664668	+	373	73669604	-	Mbar_A2108	-	hypothetical protein
2045	 39.09	0	2665469..2666563	+	364	73669605	-	Mbar_A2109	-	hypothetical protein
2046	 29.22	-2	2666995..2667432	+	145	73669606	-	Mbar_A2110	-	hypothetical protein
2047	 46.73	+1	2667813..2669171	+	452	73669607	-	Mbar_A2111	-	hypothetical protein
2048	 38.82	0	2669255..2669509	+	84	73669608	-	Mbar_A2112	-	hypothetical protein
2049	 45.36	0	2669760..2671937	-	725	73669609	-	Mbar_A2113	-	cell surface protein
2050	 36.59	-1	2672423..2672698	+	91	73669610	-	Mbar_A2114	-	hypothetical protein
2051	 46.05	0	2672740..2673195	+	151	73669611	-	Mbar_A2115	-	hypothetical protein
2052	 43.01	0	2673314..2673685	+	123	73669612	-	Mbar_A2116	-	hypothetical protein
2053	 45.76	0	2673678..2674337	+	219	73669613	-	Mbar_A2117	-	hypothetical protein
2054	 33.45	-1	2674489..2675322	-	277	73669614	-	Mbar_A2118	-	hypothetical protein
2055	 39.67	0	2675731..2676030	+	99	73669615	-	Mbar_A2119	-	hypothetical protein
2056	 46.34	0	2676343..2676588	+	81	73669616	-	Mbar_A2120	-	hypothetical protein
2057	 34.16	-1	2676685..2676927	-	80	73669617	-	Mbar_A2121	-	hypothetical protein
2058	 40.18	0	2676928..2677146	-	72	73669618	-	Mbar_A2122	-	hypothetical protein
2059	 33.83	-1	2677655..2678461	+	268	73669619	-	Mbar_A2123	-	hypothetical protein
2060	 35.12	-1	2678534..2678869	-	111	73669620	-	Mbar_A2124	-	hypothetical protein
2061	 48.04	+1	2679348..2680190	+	280	73669621	-	Mbar_A2125	-	metallo-beta-lactamase superfamily protein
2062	 50.36	+1	2680822..2682330	+	502	73669622	-	Mbar_A2126	-	seryl-tRNA synthetase
2063	 47.44	+1	2682948..2683571	+	207	73669623	-	Mbar_A2127	-	30S ribosomal protein S3Ae
2064	 46.11	0	2683737..2686304	-	855	73669624	-	Mbar_A2128	-	DNA topoisomerase, type I
2065	 48.72	+1	2686866..2688152	+	428	73669625	-	Mbar_A2129	-	thiamine biosynthesis protein ThiC
2066	 42.08	0	2689047..2689778	+	243	73669626	-	Mbar_A2130	-	hypothetical protein
41.74	MEAN

4.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.