IslandPathversion 1.0

IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.74 STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1751	 42.59	0	2256777..2256884	+	35	73669311	-	Mbar_A1805	-	type I site-specific deoxyribonuclease
1752	 42.92	0	2257544..2258002	+	152	73669312	-	Mbar_A1806	-	small heat shock protein
1753	 46.96	+1	2258486..2259094	-	202	73669313	-	Mbar_A1807	-	hypothetical protein
1754	 44.39	0	2259572..2260810	-	412	73669314	pgk	Mbar_A1808	-	phosphoglycerate kinase
1755	 44.32	0	2261111..2261656	+	181	73669315	-	Mbar_A1809	-	DNA polymerase
1756	 42.09	0	2262158..2262454	+	98	73669316	-	Mbar_A1810	-	hypothetical protein
1757	 44.62	0	2262668..2262862	+	64	73669317	-	Mbar_A1811	-	ferredoxin
1758	 37.38	0	2262959..2264686	-	575	73669318	-	Mbar_A1812	-	hypothetical protein
1759	 41.26	0	2265056..2265976	-	306	73669319	-	Mbar_A1813	-	hypothetical protein
1760	 40.26	0	2266007..2266396	-	129	73669320	-	Mbar_A1814	-	hypothetical protein
1761	 38.83	0	2266923..2268776	-	617	73669321	-	Mbar_A1815	-	hypothetical protein
1762	 38.01	0	2269205..2270722	-	505	73669322	-	Mbar_A1816	-	hypothetical protein
1763	 45.28	0	2270807..2272288	-	493	73669323	-	Mbar_A1817	-	phycocyanin alpha phycocyanobilin lyase
1764	 42.40	0	2272288..2273136	-	282	73669324	-	Mbar_A1818	-	hypothetical protein
1765	 45.65	0	2273133..2273741	-	202	73669325	-	Mbar_A1819	-	hypothetical protein
1766	 46.05	0	2274639..2275865	-	408	73669326	-	Mbar_A1820	-	acetate kinase
1767	 44.51	0	2275987..2276988	-	333	73669327	-	Mbar_A1821	-	phosphotransacetylase
1768	 40.72	0	2277234..2277815	+	193	73669328	-	Mbar_A1822	-	iron-sulfur flavoprotein
1769	 46.97	+1	2278110..2279891	+	593	73669329	-	Mbar_A1823	-	putative chloride channel
1770	 43.18	0	2280017..2283691	+	1224	73669330	-	Mbar_A1824	-	hypothetical protein
1771	 33.90	-1	2284097..2284804	-	235	73669331	-	Mbar_A1825	-	hypothetical protein
1772	 37.69	0	2285098..2288382	+	1094	73669332	-	Mbar_A1826	-	hypothetical protein
1773	 44.54	0	2288394..2288759	-	121	73669333	-	Mbar_A1827	-	hypothetical protein
1774	 29.56	-2	2288942..2289259	+	105	73669334	-	Mbar_A1828	-	hypothetical protein
1775	 43.22	0	2289524..2290039	-	171	73669335	-	Mbar_A1829	-	hypothetical protein
1776	 42.34	0	2290510..2291442	-	310	73669336	-	Mbar_A1830	-	hypothetical protein
1777	 44.06	0	2291439..2292296	-	285	73669337	-	Mbar_A1831	-	hypothetical protein
1778	 41.69	0	2292398..2293630	-	410	73669338	-	Mbar_A1832	-	cation efflux system protein
1779	 47.35	+1	2293774..2294151	-	125	73669339	-	Mbar_A1833	-	hypothetical protein
1780	 46.53	+1	2294484..2294930	-	148	73669340	-	Mbar_A1834	-	hypothetical protein
1781	 47.33	+1	2295514..2296842	-	442	73669341	-	Mbar_A1835	-	2-methylthioadenine synthase
1782	 49.00	+1	2297305..2298402	-	365	73669342	glpX	Mbar_A1836	-	fructose 1,6-bisphosphatase II
1783	 42.49	0	2298827..2299558	+	243	73669343	-	Mbar_A1837	-	glutamine amidotransferase (class I)
1784	 44.00	0	2299807..2300331	-	174	73669344	-	Mbar_A1838	-	hypothetical protein
1785	 39.52	0	2300882..2301673	-	263	73669345	-	Mbar_A1839	-	methanophenazine-reducing hydrogenase, cytochrome B subunit
1786	 46.06	0	2301688..2303478	-	596	73669346	-	Mbar_A1840	-	methanophenazine-reducing hydrogenase, large subunit
1787	 43.85	0	2303478..2304713	-	411	73669347	-	Mbar_A1841	-	methanophenazine-reducing hydrogenase, small subunit
1788	 46.15	0	2305065..2305985	+	306	73669348	-	Mbar_A1842	-	hypothetical protein
1789	 45.06	0	2306210..2306533	-	107	73669349	-	Mbar_A1843	-	hypothetical protein
1790	 45.47	0	2306989..2307474	-	161	73669350	-	Mbar_A1844	-	hydrogenase expression/formation protein
1791	 44.44	0	2307574..2308347	-	257	73669351	-	Mbar_A1845	-	methanophenazine-reducing hydrogenase, cytochrome B subunit
1792	 46.62	+1	2308372..2310147	-	591	73669352	-	Mbar_A1846	-	methanophenazine-reducing hydrogenase, large subunit
1793	 47.37	+1	2310155..2311315	-	386	73669353	-	Mbar_A1847	-	methanophenazine-reducing hydrogenase, small subunit
1794	 42.15	0	2312727..2312987	+	86	73669354	-	Mbar_A1848	-	hydrogenase expression/formation protein
1795	 45.49	0	2313008..2314126	+	372	73669355	-	Mbar_A1849	-	hydrogenase expression/formation protein
1796	 43.03	0	2314119..2314520	+	133	73669356	hypA	Mbar_A1850	-	hydrogenase nickel incorporation protein
1797	 41.11	0	2314567..2315235	+	222	73669357	-	Mbar_A1851	-	hydrogenase expression/formation protein
1798	 47.61	+1	2315465..2316508	+	347	73669358	-	Mbar_A1852	-	hydrogenase expression/formation protein
1799	 35.34	-1	2316979..2317326	+	115	73669359	-	Mbar_A1853	-	hypothetical protein
1800	 38.83	0	2317644..2318171	+	175	73669360	-	Mbar_A1854	-	hypothetical protein
1801	 39.05	0	2318443..2318862	+	139	73669361	-	Mbar_A1855	-	hypothetical protein
1802	 40.68	0	2319344..2320132	+	262	73669362	-	Mbar_A1856	-	hypothetical protein
1803	 38.74	0	2321619..2322413	+	264	73669363	-	Mbar_A1858	-	putative ABC transport system permease protein
1804	 42.49	0	2322504..2322896	-	130	73669364	-	Mbar_A1859	-	thioredoxin
1805	 43.04	0	2323320..2323700	-	126	73669365	-	Mbar_A1860	-	hypothetical protein
1806	 44.67	0	2324435..2325184	+	249	73669366	-	Mbar_A1861	-	hypothetical protein
1807	 46.55	+1	2325626..2326858	+	410	73669367	-	Mbar_A1862	-	S-adenosylmethionine synthetase
1808	 42.64	0	2326881..2327750	-	289	73669368	ubiA	Mbar_A1863	-	prenyltransferase
1809	 40.18	0	2328604..2330574	+	656	73669369	-	Mbar_A1864	-	hypothetical protein
1810	 45.14	0	2330689..2331603	-	304	73669370	-	Mbar_A1865	-	quinolinate synthetase
1811	 46.45	0	2332305..2333120	-	271	73669371	-	Mbar_A1866	-	L-aspartate dehydrogenase
1812	 43.84	0	2333317..2334144	+	275	73669372	-	Mbar_A1867	-	nicotinate-nucleotide pyrophosphorylase [carboxylating]
1813	 43.86	0	2334805..2336010	+	401	73669373	-	Mbar_A1868	-	iron(III) dicitrate-binding protein
1814	 44.36	0	2336509..2337714	+	401	73669374	-	Mbar_A1869	-	iron(III) dicitrate-binding protein
1815	 44.55	0	2338156..2339367	+	403	73669375	-	Mbar_A1870	-	iron(III) dicitrate-binding protein
1816	 47.06	+1	2339386..2340456	+	356	73669376	-	Mbar_A1871	-	iron(III) dicitrate transport system permease protein
1817	 44.96	0	2340453..2341235	+	260	73669377	-	Mbar_A1872	-	iron(III) dicitrate transport ATP-binding protein
1818	 44.66	0	2341417..2341875	-	152	73669378	rps15p	Mbar_A1873	-	30S ribosomal protein S15P
1819	 43.01	0	2342246..2343547	-	433	73669379	-	Mbar_A1874	-	hypothetical protein
1820	 46.98	+1	2343760..2344389	-	209	73669380	-	Mbar_A1875	-	hypothetical protein
1821	 45.24	0	2344364..2345077	-	237	73669381	-	Mbar_A1876	-	hypothetical protein
1822	 44.88	0	2345116..2345652	-	178	73669382	-	Mbar_A1877	-	hypothetical protein
1823	 43.06	0	2346169..2347824	+	551	73669383	-	Mbar_A1878	-	ubiquinone biosynthesis protein
1824	 41.53	0	2347984..2348715	-	243	73669384	-	Mbar_A1879	-	hypothetical protein
1825	 43.99	0	2349279..2350019	+	246	73669385	-	Mbar_A1880	-	hypothetical protein
1826	 38.33	0	2350126..2350365	+	79	73669386	-	Mbar_A1881	-	hypothetical protein
1827	 42.51	0	2350721..2350927	+	68	73669387	-	Mbar_A1882	-	mercury ion binding protein
1828	 40.69	0	2351076..2351306	+	76	73669388	-	Mbar_A1883	-	heavy-metal-associated protein
1829	 40.21	0	2351645..2352022	-	125	73669389	-	Mbar_A1884	-	hypothetical protein
1830	 38.56	0	2352146..2352910	+	254	73669390	-	Mbar_A1885	-	CODH nickel-insertion accessory protein
1831	 37.36	0	2353073..2353717	+	214	73669391	-	Mbar_A1886	-	FMN-binding protein
1832	 35.53	-1	2353708..2354253	+	181	73669392	-	Mbar_A1887	-	dTDP-4-dehydrorhamnose 3,5-epimerase
1833	 43.00	0	2354827..2355033	+	68	73669393	-	Mbar_A1888	-	mercury ion binding protein
1834	 44.57	0	2355632..2358496	+	954	73669394	-	Mbar_A1889	-	P-type copper-transporting ATPase
1835	 41.76	0	2358613..2358873	+	86	73669395	-	Mbar_A1890	-	hypothetical protein
1836	 40.07	0	2359108..2359656	-	182	73669396	-	Mbar_A1891	-	rubrerythrin
1837	 40.33	0	2359814..2360113	-	99	73669397	-	Mbar_A1892	-	putative small heat shock protein
1838	 37.31	0	2360719..2361045	+	108	73669398	-	Mbar_A1893	-	hypothetical protein
1839	 41.95	0	2361086..2361352	-	88	73669399	-	Mbar_A1894	-	hypothetical protein
1840	 39.36	0	2361864..2362892	-	342	73669400	-	Mbar_A1895	-	hypothetical protein
1841	 42.20	0	2363157..2364149	+	330	73669401	-	Mbar_A1896	-	hypothetical protein
1842	 43.85	0	2364542..2365045	+	167	73669402	-	Mbar_A1897	-	hypothetical protein
1843	 45.98	0	2365072..2366067	+	331	73669403	-	Mbar_A1898	-	homoserine dehydrogenase
1844	 46.40	0	2366157..2367863	+	568	73669404	-	Mbar_A1899	-	DNA ligase (ATP)
1845	 35.25	-1	2369018..2369383	+	121	73669405	-	Mbar_A1900	-	hypothetical protein
1846	 35.61	-1	2369664..2370059	-	131	73669406	-	Mbar_A1901	-	hypothetical protein
1847	 30.99	-2	2370281..2370877	-	198	73669407	-	Mbar_A1902	-	hypothetical protein
1848	 35.01	-1	2371110..2372363	-	417	73669408	-	Mbar_A1903	-	transposase
1849	 33.63	-1	2372823..2373161	-	112	73669409	-	Mbar_A1904	-	hypothetical protein
1850	 37.44	0	2373218..2374117	-	299	73669410	-	Mbar_A1905	-	hypothetical protein
41.74	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.