IslandPathversion 1.0

IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.74 STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1627	 36.48	-1	2073895..2074434	+	179	73669187	-	Mbar_A1680	-	hypothetical protein
1628	 34.09	-1	2074627..2075022	-	131	73669188	-	Mbar_A1681	-	hypothetical protein
1629	 36.92	-1	2075130..2075519	-	129	73669189	-	Mbar_A1682	-	hypothetical protein
1630	 46.71	+1	2075755..2076681	-	308	73669190	-	Mbar_A1683	-	NADPH:quinone reductase
1631	 40.21	0	2077510..2080125	+	871	73669191	-	Mbar_A1684	-	cell surface glycoprotein
1632	 41.48	0	2080385..2080924	-	179	73669192	-	Mbar_A1685	-	phosphinothricin acetyltransferase
1633	 41.69	0	2081266..2082342	+	358	73669193	-	Mbar_A1686	-	hypothetical protein
1634	 38.75	0	2083291..2084988	+	565	73669194	-	Mbar_A1687	-	signal-transducing histidine kinase
1635	 46.30	0	2085504..2086529	+	341	73669195	-	Mbar_A1688	-	methylcobalamin:coenzyme M methyltransferase
1636	 43.64	0	2086607..2087314	+	235	73669196	-	Mbar_A1689	-	hypothetical protein
1637	 37.76	0	2087490..2088008	-	172	73669197	-	Mbar_A1690	-	hypothetical protein
1638	 43.49	0	2088491..2088874	+	127	73669198	-	Mbar_A1691	-	hypothetical protein
1639	 41.39	0	2089437..2090330	+	297	73669199	ubiA	Mbar_A1692	-	prenyltransferase
1640	 41.41	0	2090394..2091371	-	325	73669200	-	Mbar_A1693	-	arginine deiminase
1641	 41.72	0	2091404..2092429	-	341	73669201	-	Mbar_A1694	-	hypothetical protein
1642	 44.75	0	2092560..2093435	-	291	73669202	-	Mbar_A1695	-	tungsten-containing aldehyde ferredoxin oxidoreductase cofactor modifying protein
1643	 45.77	0	2093463..2093663	-	66	73669203	-	Mbar_A1696	-	tungsten-containing aldehyde ferredoxin oxidoreductase cofactor modifying protein
1644	 39.83	0	2093974..2094804	+	276	73669204	-	Mbar_A1697	-	hypothetical protein
1645	 39.98	0	2095068..2096045	+	325	73669205	-	Mbar_A1698	-	transporter
1646	 38.98	0	2096143..2097612	-	489	73669206	-	Mbar_A1699	-	hypothetical protein
1647	 43.54	0	2097719..2098051	-	110	73669207	-	Mbar_A1700	-	hypothetical protein
1648	 31.40	-2	2098431..2099000	-	189	73669208	-	Mbar_A1701	-	GCN5-related N-acetyltransferase
1649	 37.41	0	2099197..2100987	-	596	73669209	-	Mbar_A1702	-	hypothetical protein
1650	 36.74	-1	2101064..2101768	-	234	73669210	-	Mbar_A1703	-	hypothetical protein
1651	 39.19	0	2102687..2103745	-	352	73669211	-	Mbar_A1704	-	heavy metal resistance membrane protein
1652	 34.20	-1	2103816..2104163	-	115	73669212	-	Mbar_A1705	-	ArsR family transcriptional regulator
1653	 37.40	0	2104442..2104834	+	130	73669213	-	Mbar_A1706	-	universal stress protein
1654	 37.22	0	2105059..2105418	+	119	73669214	-	Mbar_A1707	-	ArsR family transcriptional regulator
1655	 36.33	-1	2105737..2106036	+	99	73669215	-	Mbar_A1708	-	ArsR family transcriptional regulator
1656	 39.30	0	2106505..2107476	+	323	73669216	-	Mbar_A1709	-	hypothetical protein
1657	 35.00	-1	2107482..2107781	+	99	73669217	-	Mbar_A1710	-	hypothetical protein
1658	 42.71	0	2107849..2108232	+	127	73669218	-	Mbar_A1711	-	hypothetical protein
1659	 38.01	0	2108337..2108657	+	106	73669219	-	Mbar_A1712	-	hypothetical protein
1660	 42.26	0	2109177..2109725	-	182	73669220	-	Mbar_A1713	-	tetrahydromethanopterin S-methyltransferase subunit A
1661	 40.96	0	2109810..2110556	-	248	73669221	arsM	Mbar_A1714	-	arsenite S-adenosylmethyltransferase
1662	 38.45	0	2110827..2111471	-	214	73669222	-	Mbar_A1715	-	cytochrome c-type biogenesis protein CcdA
1663	 39.52	0	2111475..2112056	-	193	73669223	-	Mbar_A1716	-	hypothetical protein
1664	 36.51	-1	2112274..2112462	-	62	73669224	-	Mbar_A1717	-	hypothetical protein
1665	 36.97	0	2112459..2112623	-	54	73669225	-	Mbar_A1718	-	hypothetical protein
1666	 39.44	0	2113242..2113601	+	119	73669226	-	Mbar_A1719	-	ArsR family transcriptional regulator
1667	 39.77	0	2113699..2114040	-	113	73669227	-	Mbar_A1720	-	4-carboxymuconolactone decarboxylase
1668	 43.36	0	2114740..2115537	+	265	73669228	-	Mbar_A1721	-	hypothetical protein
1669	 38.30	0	2115757..2116542	-	261	73669229	-	Mbar_A1722	-	hypothetical protein
1670	 38.58	0	2116799..2117122	+	107	73669230	-	Mbar_A1723	-	hypothetical protein
1671	 37.75	0	2117083..2117331	+	82	73669231	-	Mbar_A1724	-	hypothetical protein
1672	 43.57	0	2117348..2117728	+	126	73669232	-	Mbar_A1725	-	hypothetical protein
1673	 42.32	0	2117771..2118115	+	114	73669233	-	Mbar_A1726	-	hypothetical protein
1674	 42.37	0	2118141..2118461	+	106	73669234	-	Mbar_A1727	-	hypothetical protein
1675	 42.46	0	2118616..2118900	+	94	73669235	-	Mbar_A1728	-	hypothetical protein
1676	 39.05	0	2119077..2119391	+	104	73669236	-	Mbar_A1729	-	ArsR family transcriptional regulator
1677	 42.56	0	2119480..2120205	-	241	73669237	-	Mbar_A1730	-	polysaccharide deacetylase
1678	 40.05	0	2120171..2121301	-	376	73669238	-	Mbar_A1731	-	N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein
1679	 41.96	0	2121277..2122122	-	281	73669239	-	Mbar_A1732	-	hypothetical protein
1680	 37.25	0	2123192..2124670	+	492	73669240	-	Mbar_A1733	-	reverse transcriptase
1681	 37.18	0	2125949..2126779	-	276	73669241	-	Mbar_A1734	-	hypothetical protein
1682	 36.13	-1	2127106..2127999	+	297	73669242	-	Mbar_A1735	-	hypothetical protein
1683	 45.28	0	2128230..2128865	-	211	73669243	-	Mbar_A1736	-	NifU protein
1684	 44.83	0	2129049..2130170	-	373	73669244	-	Mbar_A1737	-	homocysteine desulfhydrase
1685	 43.33	0	2130456..2130875	-	139	73669245	-	Mbar_A1738	-	hypothetical protein
1686	 46.05	0	2130894..2131121	-	75	73669246	-	Mbar_A1739	-	hypothetical protein
1687	 44.05	0	2131312..2131731	-	139	73669247	-	Mbar_A1740	-	histidine triad protein
1688	 43.17	0	2132211..2132576	+	121	73669248	-	Mbar_A1741	-	hypothetical protein
1689	 37.28	0	2132837..2134432	+	531	73669249	-	Mbar_A1742	-	transposase
1690	 38.48	0	2134638..2137418	-	926	73669250	-	Mbar_A1743	-	hypothetical protein
1691	 38.53	0	2138550..2139722	-	390	73669251	-	Mbar_A1744	-	hypothetical protein
1692	 41.51	0	2139933..2140886	-	317	73669252	-	Mbar_A1745	-	tyrosyl-tRNA synthetase
1693	 40.03	0	2140925..2141656	-	243	73669253	-	Mbar_A1746	-	hypothetical protein
1694	 38.76	0	2141674..2141931	-	85	73669254	-	Mbar_A1747	-	hypothetical protein
1695	 42.97	0	2142534..2143457	-	307	73669255	-	Mbar_A1748	-	malate dehydrogenase
1696	 38.80	0	2143690..2144439	+	249	73669256	-	Mbar_A1749	-	hypothetical protein
1697	 41.97	0	2144631..2145371	+	246	73669257	-	Mbar_A1750	-	glucose-6-phosphate isomerase
1698	 42.03	0	2145617..2146375	+	252	73669258	-	Mbar_A1751	-	hypothetical protein
1699	 43.18	0	2146476..2147876	-	466	73669259	-	Mbar_A1752	-	single-stranded-DNA-specific exonuclease RecJ
1700	 39.75	0	2147918..2148400	-	160	73669260	-	Mbar_A1753	-	hypothetical protein
1701	 39.39	0	2148901..2149296	-	131	73669261	-	Mbar_A1754	-	hypothetical protein
1702	 45.38	0	2150369..2152012	-	547	73669262	-	Mbar_A1755	-	ELP3 family histone acetyltransferase
1703	 43.23	0	2152397..2152972	-	191	73669263	-	Mbar_A1756	-	hypothetical protein
1704	 42.44	0	2154200..2154682	-	160	73669264	-	Mbar_A1757	-	hypothetical protein
1705	 46.59	+1	2155749..2157755	+	668	73669265	-	Mbar_A1758	-	hypothetical protein
1706	 42.95	0	2157926..2158684	+	252	73669266	-	Mbar_A1759	-	hypothetical protein
1707	 39.61	0	2160230..2160484	+	84	73669267	-	Mbar_A1761	-	molybdenum formylmethanofuran dehydrogenase subunit
1708	 48.43	+1	2160481..2160798	+	105	73669268	-	Mbar_A1762	-	formylmethanofuran dehydrogenase, subunit C
1709	 45.58	0	2160802..2162214	+	470	73669269	-	Mbar_A1763	-	formylmethanofuran dehydrogenase, subunit B
1710	 39.74	0	2163180..2163632	+	150	73669270	-	Mbar_A1764	-	hypothetical protein
1711	 42.63	0	2164080..2165090	+	336	73669271	-	Mbar_A1765	-	hypothetical protein
1712	 41.84	0	2165297..2166025	-	242	73669272	-	Mbar_A1766	-	multidrug ABC transporter, permease protein
1713	 44.14	0	2166022..2166789	-	255	73669273	-	Mbar_A1767	-	multidrug ABC transporter, ATP-binding protein
1714	 39.93	0	2166786..2167679	-	297	73669274	-	Mbar_A1768	-	ABC transporter, permease protein
1715	 40.36	0	2167693..2169585	-	630	73669275	-	Mbar_A1769	-	ABC transporter, ATP-binding protein
1716	 41.76	0	2169828..2171405	-	525	73669276	-	Mbar_A1770	-	hypothetical protein
1717	 43.43	0	2171422..2175453	-	1343	73669277	cobN	Mbar_A1771	-	cobaltochelatase
1718	 42.41	0	2175440..2177158	-	572	73669278	-	Mbar_A1772	-	PQQ repeat-containing protein
1719	 41.97	0	2177163..2178713	-	516	73669279	-	Mbar_A1773	-	hypothetical protein
1720	 38.49	0	2178743..2179324	-	193	73669280	-	Mbar_A1774	-	hypothetical protein
1721	 39.41	0	2179697..2181457	+	586	73669281	-	Mbar_A1775	-	hypothetical protein
1722	 44.17	0	2181479..2183545	+	688	73669282	-	Mbar_A1776	-	protoporphyrin IX magnesium-chelatase
1723	 43.84	0	2183680..2186478	+	932	73669283	-	Mbar_A1777	-	replicative DNA polymerase I
1724	 43.49	0	2187494..2188399	+	301	73669284	-	Mbar_A1778	-	phosphate-binding protein
1725	 41.19	0	2188435..2189325	+	296	73669285	-	Mbar_A1779	-	phosphate ABC transporter, permease protein
1726	 42.53	0	2189328..2190251	+	307	73669286	-	Mbar_A1780	-	phosphate ABC transporter, permease protein
41.74	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.