IslandPathversion 1.0

IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.74 STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1570	 44.84	0	1992468..1993832	+	454	73669130	-	Mbar_A1620	-	aldehyde dehydrogenase
1571	 39.42	0	1993898..1994275	+	125	73669131	-	Mbar_A1621	-	hypothetical protein
1572	 32.85	-1	1995587..1996210	-	207	73669132	-	Mbar_A1622	-	hypothetical protein
1573	 28.01	-2	1997097..1998092	+	331	73669133	-	Mbar_A1623	-	hypothetical protein
1574	 44.49	0	1998243..1999577	+	444	73669134	-	Mbar_A1624	-	hypothetical protein
1575	 43.32	0	1999567..2001918	+	783	73669135	-	Mbar_A1625	-	hypothetical protein
1576	 41.09	0	2002090..2004024	-	644	73669136	-	Mbar_A1626	-	hypothetical protein
1577	 39.12	0	2005431..2007278	-	615	73669137	-	Mbar_A1627	-	hypothetical protein
1578	 47.10	+1	2009643..2010194	-	183	73669138	-	Mbar_A1628	-	phenylacrylic acid decarboxylase
1579	 44.72	0	2010375..2010734	-	119	73669139	-	Mbar_A1629	-	hypothetical protein
1580	 43.92	0	2010906..2012105	-	399	73669140	-	Mbar_A1630	-	hypothetical protein
1581	 45.05	0	2012216..2013145	+	309	73669141	-	Mbar_A1631	-	LPPG:FO 2-phospho-L-lactate transferase
1582	 42.16	0	2013518..2014639	+	373	73669142	-	Mbar_A1632	-	hypothetical protein
1583	 41.88	0	2015011..2015583	+	190	73669143	-	Mbar_A1633	-	adenine phosphoribosyltransferase
1584	 47.02	+1	2015564..2016571	+	335	73669144	-	Mbar_A1634	-	diphthamide synthase subunit
1585	 41.75	0	2016756..2017349	+	197	73669145	-	Mbar_A1635	-	methyltransferase
1586	 45.35	0	2017680..2018636	+	318	73669146	-	Mbar_A1636	-	putative RNA-binding protein
1587	 39.78	0	2018715..2018993	+	92	73669147	-	Mbar_A1637	-	DNA-directed RNA polymerase, subunit L
1588	 47.11	+1	2019491..2020651	+	386	73669148	-	Mbar_A1638	-	Sep-tRNA:Cys-tRNA synthetase
1589	 40.41	0	2021006..2021344	-	112	73669149	-	Mbar_A1639	-	hypothetical protein
1590	 36.89	-1	2022489..2022854	+	121	73669150	-	Mbar_A1640	-	hypothetical protein
1591	 43.86	0	2023061..2024323	-	420	73669151	-	Mbar_A1641	-	diaminopimelate decarboxylase
1592	 43.48	0	2024847..2026601	-	584	73669152	-	Mbar_A1642	-	bifunctional DNA polymerase X family protein/ histidinol phosphatase
1593	 43.15	0	2026807..2028456	-	549	73669153	-	Mbar_A1643	-	DNA ligase (ATP)
1594	 35.42	-1	2028460..2028555	-	31	73669154	-	Mbar_A1644	-	DNA ligase (ATP)
1595	 38.44	0	2029356..2029766	-	136	73669155	-	Mbar_A1645	-	phenylacetic acid degradation protein
1596	 41.27	0	2030236..2031420	+	394	73669156	-	Mbar_A1646	-	hypothetical protein
1597	 46.09	0	2033220..2033462	+	80	73669157	-	Mbar_A1648	-	hypothetical protein
1598	 38.89	0	2034492..2035013	+	173	73669158	-	Mbar_A1649	-	hypothetical protein
1599	 44.87	0	2035722..2036111	+	129	73669159	-	Mbar_A1650	-	hypothetical protein
1600	 40.67	0	2036460..2038475	+	671	73669160	-	Mbar_A1651	-	glutathione-regulated potassium-efflux system protein
1601	 44.44	0	2038605..2039198	+	197	73669161	-	Mbar_A1652	-	Maf protein
1602	 41.24	0	2039435..2040850	+	471	73669162	-	Mbar_A1653	-	cysteinyl-tRNA synthetase
1603	 36.07	-1	2041206..2041424	+	72	73669163	-	Mbar_A1654	-	hypothetical protein
1604	 32.10	-2	2041666..2042070	-	134	73669164	-	Mbar_A1655	-	transposase
1605	 32.08	-2	2042107..2042265	+	52	73669165	-	Mbar_A1656	-	transposase
1606	 35.36	-1	2042283..2043218	+	311	73669166	-	Mbar_A1657	-	transposase
1607	 43.40	0	2043481..2044404	+	307	73669167	-	Mbar_A1658	-	ATP-dependent protease La
1608	 39.16	0	2044577..2045074	-	165	73669168	-	Mbar_A1659	-	hypothetical protein
1609	 53.47	+2	2045260..2046918	-	552	73669169	-	Mbar_A1660	-	hypothetical protein
1610	 54.39	+2	2046932..2048242	-	436	73669170	-	Mbar_A1661	-	hypothetical protein
1611	 50.12	+1	2049308..2050552	+	414	73669171	-	Mbar_A1662	-	hypothetical protein
1612	 54.34	+2	2050767..2052056	-	429	73669172	-	Mbar_A1663	-	hypothetical protein
1613	 45.69	0	2052557..2053414	+	285	73669173	-	Mbar_A1664	-	putative phosphoesterase
1614	 44.85	0	2053961..2054125	+	54	73669174	-	Mbar_A1665	-	sensory transduction histidine kinase
1615	 41.09	0	2054203..2057040	+	945	73669175	-	Mbar_A1666	-	sensory transduction histidine kinase
1616	 41.99	0	2057553..2059100	+	515	73669176	lysS	Mbar_A1667	-	lysyl-tRNA synthetase
1617	 32.54	-1	2061235..2061738	-	167	73669177	-	Mbar_A1669	-	hypothetical protein
1618	 48.15	+1	2062060..2064927	+	955	73669178	-	Mbar_A1670	-	ATP-dependent RNA helicase
1619	 36.13	-1	2066352..2067317	+	321	73669179	-	Mbar_A1672	-	hypothetical protein
1620	 35.85	-1	2067767..2068282	+	171	73669180	-	Mbar_A1673	-	hypothetical protein
1621	 45.17	0	2068234..2069247	-	337	73669181	-	Mbar_A1674	-	ABC transporter, ATP-binding protein
1622	 44.01	0	2069307..2069999	-	230	73669182	-	Mbar_A1675	-	hypothetical protein
1623	 38.93	0	2069996..2071228	-	410	73669183	-	Mbar_A1676	-	hypothetical protein
1624	 40.16	0	2072190..2072702	+	170	73669184	-	Mbar_A1677	-	hypothetical protein
1625	 38.10	0	2072863..2072988	+	41	73669185	-	Mbar_A1678	-	nucleotidyltransferase
1626	 39.95	0	2073028..2073450	-	140	73669186	-	Mbar_A1679	-	hypothetical protein
1627	 36.48	-1	2073895..2074434	+	179	73669187	-	Mbar_A1680	-	hypothetical protein
1628	 34.09	-1	2074627..2075022	-	131	73669188	-	Mbar_A1681	-	hypothetical protein
1629	 36.92	-1	2075130..2075519	-	129	73669189	-	Mbar_A1682	-	hypothetical protein
1630	 46.71	+1	2075755..2076681	-	308	73669190	-	Mbar_A1683	-	NADPH:quinone reductase
1631	 40.21	0	2077510..2080125	+	871	73669191	-	Mbar_A1684	-	cell surface glycoprotein
1632	 41.48	0	2080385..2080924	-	179	73669192	-	Mbar_A1685	-	phosphinothricin acetyltransferase
1633	 41.69	0	2081266..2082342	+	358	73669193	-	Mbar_A1686	-	hypothetical protein
1634	 38.75	0	2083291..2084988	+	565	73669194	-	Mbar_A1687	-	signal-transducing histidine kinase
1635	 46.30	0	2085504..2086529	+	341	73669195	-	Mbar_A1688	-	methylcobalamin:coenzyme M methyltransferase
1636	 43.64	0	2086607..2087314	+	235	73669196	-	Mbar_A1689	-	hypothetical protein
1637	 37.76	0	2087490..2088008	-	172	73669197	-	Mbar_A1690	-	hypothetical protein
1638	 43.49	0	2088491..2088874	+	127	73669198	-	Mbar_A1691	-	hypothetical protein
1639	 41.39	0	2089437..2090330	+	297	73669199	ubiA	Mbar_A1692	-	prenyltransferase
1640	 41.41	0	2090394..2091371	-	325	73669200	-	Mbar_A1693	-	arginine deiminase
1641	 41.72	0	2091404..2092429	-	341	73669201	-	Mbar_A1694	-	hypothetical protein
1642	 44.75	0	2092560..2093435	-	291	73669202	-	Mbar_A1695	-	tungsten-containing aldehyde ferredoxin oxidoreductase cofactor modifying protein
1643	 45.77	0	2093463..2093663	-	66	73669203	-	Mbar_A1696	-	tungsten-containing aldehyde ferredoxin oxidoreductase cofactor modifying protein
1644	 39.83	0	2093974..2094804	+	276	73669204	-	Mbar_A1697	-	hypothetical protein
1645	 39.98	0	2095068..2096045	+	325	73669205	-	Mbar_A1698	-	transporter
1646	 38.98	0	2096143..2097612	-	489	73669206	-	Mbar_A1699	-	hypothetical protein
1647	 43.54	0	2097719..2098051	-	110	73669207	-	Mbar_A1700	-	hypothetical protein
1648	 31.40	-2	2098431..2099000	-	189	73669208	-	Mbar_A1701	-	GCN5-related N-acetyltransferase
1649	 37.41	0	2099197..2100987	-	596	73669209	-	Mbar_A1702	-	hypothetical protein
1650	 36.74	-1	2101064..2101768	-	234	73669210	-	Mbar_A1703	-	hypothetical protein
1651	 39.19	0	2102687..2103745	-	352	73669211	-	Mbar_A1704	-	heavy metal resistance membrane protein
1652	 34.20	-1	2103816..2104163	-	115	73669212	-	Mbar_A1705	-	ArsR family transcriptional regulator
1653	 37.40	0	2104442..2104834	+	130	73669213	-	Mbar_A1706	-	universal stress protein
1654	 37.22	0	2105059..2105418	+	119	73669214	-	Mbar_A1707	-	ArsR family transcriptional regulator
1655	 36.33	-1	2105737..2106036	+	99	73669215	-	Mbar_A1708	-	ArsR family transcriptional regulator
1656	 39.30	0	2106505..2107476	+	323	73669216	-	Mbar_A1709	-	hypothetical protein
1657	 35.00	-1	2107482..2107781	+	99	73669217	-	Mbar_A1710	-	hypothetical protein
1658	 42.71	0	2107849..2108232	+	127	73669218	-	Mbar_A1711	-	hypothetical protein
1659	 38.01	0	2108337..2108657	+	106	73669219	-	Mbar_A1712	-	hypothetical protein
1660	 42.26	0	2109177..2109725	-	182	73669220	-	Mbar_A1713	-	tetrahydromethanopterin S-methyltransferase subunit A
1661	 40.96	0	2109810..2110556	-	248	73669221	arsM	Mbar_A1714	-	arsenite S-adenosylmethyltransferase
1662	 38.45	0	2110827..2111471	-	214	73669222	-	Mbar_A1715	-	cytochrome c-type biogenesis protein CcdA
1663	 39.52	0	2111475..2112056	-	193	73669223	-	Mbar_A1716	-	hypothetical protein
1664	 36.51	-1	2112274..2112462	-	62	73669224	-	Mbar_A1717	-	hypothetical protein
1665	 36.97	0	2112459..2112623	-	54	73669225	-	Mbar_A1718	-	hypothetical protein
1666	 39.44	0	2113242..2113601	+	119	73669226	-	Mbar_A1719	-	ArsR family transcriptional regulator
1667	 39.77	0	2113699..2114040	-	113	73669227	-	Mbar_A1720	-	4-carboxymuconolactone decarboxylase
1668	 43.36	0	2114740..2115537	+	265	73669228	-	Mbar_A1721	-	hypothetical protein
1669	 38.30	0	2115757..2116542	-	261	73669229	-	Mbar_A1722	-	hypothetical protein
41.74	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.