IslandPathversion 1.0

IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.74 STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1526	 39.91	0	1936473..1938236	+	587	73669086	-	Mbar_A1574	-	hypothetical protein
1527	 45.70	0	1938410..1940803	+	797	73669087	-	Mbar_A1575	-	hypothetical protein
1528	 47.20	+1	1940800..1941852	+	350	73669088	-	Mbar_A1576	-	cell division protein pelota
1529	 42.06	0	1942949..1945183	+	744	73669089	-	Mbar_A1577	-	hypothetical protein
1530	 43.89	0	1945508..1946227	-	239	73669090	-	Mbar_A1578	-	hypothetical protein
1531	 44.75	0	1946481..1947356	-	291	73669091	-	Mbar_A1579	-	hypothetical protein
1532	 43.04	0	1947777..1948322	+	181	73669092	-	Mbar_A1580	-	2'-5' RNA ligase
1533	 45.74	0	1948443..1949522	-	359	73669093	-	Mbar_A1581	-	hypothetical protein
1534	 46.47	0	1950165..1951169	+	334	73669094	rfc	Mbar_A1582	-	replication factor C small subunit
1535	 47.17	+1	1951289..1951801	+	170	73669095	-	Mbar_A1583	-	putative small multi-drug export protein
1536	 37.62	0	1951985..1952194	-	69	73669096	-	Mbar_A1584	-	histone
1537	 45.87	0	1952823..1953779	+	318	73669097	-	Mbar_A1585	-	hypothetical protein
1538	 45.18	0	1954402..1956123	+	573	73669098	-	Mbar_A1586	-	pyruvate carboxylase subunit B
1539	 47.64	+1	1956145..1957626	+	493	73669099	-	Mbar_A1587	-	pyruvate carboxylase subunit A
1540	 44.75	0	1957734..1958714	+	326	73669100	-	Mbar_A1588	-	biotin--(acetyl-COA-carboxylase) synthetase
1541	 38.77	0	1958698..1959378	+	226	73669101	-	Mbar_A1589	-	hypothetical protein
1542	 41.04	0	1959862..1960821	-	319	73669102	-	Mbar_A1590	-	phosphoserine phosphatase
1543	 40.54	0	1960853..1961476	-	207	73669103	-	Mbar_A1591	-	hypothetical protein
1544	 41.92	0	1961600..1961890	-	96	73669104	-	Mbar_A1592	-	hypothetical protein
1545	 44.03	0	1962171..1964273	-	700	73669105	-	Mbar_A1593	-	replicative DNA helicase Mcm
1546	 42.90	0	1964434..1965165	-	243	73669106	-	Mbar_A1594	-	SpoU rRNA methylase
1547	 44.53	0	1965869..1966252	+	127	73669107	-	Mbar_A1596	-	hypothetical protein
1548	 45.58	0	1966959..1967636	+	225	73669108	-	Mbar_A1597	-	sulfite reductase, assimilatory-type
1549	 41.15	0	1968353..1969132	+	259	73669109	-	Mbar_A1598	-	CoB-CoM heterodisulfide reductase, subunit E
1550	 48.05	+1	1969137..1970366	+	409	73669110	-	Mbar_A1599	-	CoB-CoM heterodisulfide reductase, subunit D
1551	 41.67	0	1970472..1971107	+	211	73669111	-	Mbar_A1600	-	hypothetical protein
1552	 38.33	0	1971100..1971720	+	206	73669112	-	Mbar_A1601	-	hypothetical protein
1553	 34.45	-1	1972084..1973247	+	387	73669113	-	Mbar_A1602	-	hypothetical protein
1554	 44.27	0	1973774..1974898	+	374	73669114	-	Mbar_A1603	-	geranylgeranyl reductase
1555	 43.88	0	1975038..1976213	+	391	73669115	-	Mbar_A1604	-	geranylgeranyl reductase
1556	 46.67	+1	1977078..1978217	+	379	73669116	-	Mbar_A1605	-	hypothetical protein
1557	 46.46	0	1978204..1979247	+	347	73669117	-	Mbar_A1606	-	putative triphosphoribosyl-dephospho-CoA synthase
1558	 44.91	0	1979244..1979891	+	215	73669118	-	Mbar_A1607	-	hypothetical protein
1559	 34.72	-1	1979973..1980551	-	192	73669119	-	Mbar_A1608	-	hypothetical protein
1560	 34.16	-1	1980564..1981286	-	240	73669120	-	Mbar_A1609	-	hypothetical protein
1561	 47.64	+1	1981983..1982702	+	239	73669121	-	Mbar_A1610	-	flavoprotein
1562	 45.35	0	1982892..1983590	-	232	73669122	-	Mbar_A1611	-	oligopeptide ABC transporter, ATP-binding protein
1563	 44.54	0	1983572..1984615	-	347	73669123	-	Mbar_A1612	-	oligopeptide ABC transporter, ATP-binding protein
1564	 42.50	0	1984612..1985571	-	319	73669124	-	Mbar_A1613	-	oligopeptide ABC transporter, permease protein
1565	 44.59	0	1985558..1986472	-	304	73669125	-	Mbar_A1614	-	oligopeptide ABC transporter, permease protein
1566	 43.93	0	1986731..1988494	-	587	73669126	-	Mbar_A1615	-	oligopeptide ABC transporter, solute-binding protein
1567	 41.59	0	1988858..1989862	-	334	73669127	-	Mbar_A1616	-	hypothetical protein
1568	 37.54	0	1990520..1991089	+	189	73669128	-	Mbar_A1618	-	hypothetical protein
1569	 44.82	0	1991245..1992132	-	295	73669129	-	Mbar_A1619	-	hypothetical protein
1570	 44.84	0	1992468..1993832	+	454	73669130	-	Mbar_A1620	-	aldehyde dehydrogenase
1571	 39.42	0	1993898..1994275	+	125	73669131	-	Mbar_A1621	-	hypothetical protein
1572	 32.85	-1	1995587..1996210	-	207	73669132	-	Mbar_A1622	-	hypothetical protein
1573	 28.01	-2	1997097..1998092	+	331	73669133	-	Mbar_A1623	-	hypothetical protein
1574	 44.49	0	1998243..1999577	+	444	73669134	-	Mbar_A1624	-	hypothetical protein
1575	 43.32	0	1999567..2001918	+	783	73669135	-	Mbar_A1625	-	hypothetical protein
1576	 41.09	0	2002090..2004024	-	644	73669136	-	Mbar_A1626	-	hypothetical protein
1577	 39.12	0	2005431..2007278	-	615	73669137	-	Mbar_A1627	-	hypothetical protein
1578	 47.10	+1	2009643..2010194	-	183	73669138	-	Mbar_A1628	-	phenylacrylic acid decarboxylase
1579	 44.72	0	2010375..2010734	-	119	73669139	-	Mbar_A1629	-	hypothetical protein
1580	 43.92	0	2010906..2012105	-	399	73669140	-	Mbar_A1630	-	hypothetical protein
1581	 45.05	0	2012216..2013145	+	309	73669141	-	Mbar_A1631	-	LPPG:FO 2-phospho-L-lactate transferase
1582	 42.16	0	2013518..2014639	+	373	73669142	-	Mbar_A1632	-	hypothetical protein
1583	 41.88	0	2015011..2015583	+	190	73669143	-	Mbar_A1633	-	adenine phosphoribosyltransferase
1584	 47.02	+1	2015564..2016571	+	335	73669144	-	Mbar_A1634	-	diphthamide synthase subunit
1585	 41.75	0	2016756..2017349	+	197	73669145	-	Mbar_A1635	-	methyltransferase
1586	 45.35	0	2017680..2018636	+	318	73669146	-	Mbar_A1636	-	putative RNA-binding protein
1587	 39.78	0	2018715..2018993	+	92	73669147	-	Mbar_A1637	-	DNA-directed RNA polymerase, subunit L
1588	 47.11	+1	2019491..2020651	+	386	73669148	-	Mbar_A1638	-	Sep-tRNA:Cys-tRNA synthetase
1589	 40.41	0	2021006..2021344	-	112	73669149	-	Mbar_A1639	-	hypothetical protein
1590	 36.89	-1	2022489..2022854	+	121	73669150	-	Mbar_A1640	-	hypothetical protein
1591	 43.86	0	2023061..2024323	-	420	73669151	-	Mbar_A1641	-	diaminopimelate decarboxylase
1592	 43.48	0	2024847..2026601	-	584	73669152	-	Mbar_A1642	-	bifunctional DNA polymerase X family protein/ histidinol phosphatase
1593	 43.15	0	2026807..2028456	-	549	73669153	-	Mbar_A1643	-	DNA ligase (ATP)
1594	 35.42	-1	2028460..2028555	-	31	73669154	-	Mbar_A1644	-	DNA ligase (ATP)
1595	 38.44	0	2029356..2029766	-	136	73669155	-	Mbar_A1645	-	phenylacetic acid degradation protein
1596	 41.27	0	2030236..2031420	+	394	73669156	-	Mbar_A1646	-	hypothetical protein
1597	 46.09	0	2033220..2033462	+	80	73669157	-	Mbar_A1648	-	hypothetical protein
1598	 38.89	0	2034492..2035013	+	173	73669158	-	Mbar_A1649	-	hypothetical protein
1599	 44.87	0	2035722..2036111	+	129	73669159	-	Mbar_A1650	-	hypothetical protein
1600	 40.67	0	2036460..2038475	+	671	73669160	-	Mbar_A1651	-	glutathione-regulated potassium-efflux system protein
1601	 44.44	0	2038605..2039198	+	197	73669161	-	Mbar_A1652	-	Maf protein
1602	 41.24	0	2039435..2040850	+	471	73669162	-	Mbar_A1653	-	cysteinyl-tRNA synthetase
1603	 36.07	-1	2041206..2041424	+	72	73669163	-	Mbar_A1654	-	hypothetical protein
1604	 32.10	-2	2041666..2042070	-	134	73669164	-	Mbar_A1655	-	transposase
1605	 32.08	-2	2042107..2042265	+	52	73669165	-	Mbar_A1656	-	transposase
1606	 35.36	-1	2042283..2043218	+	311	73669166	-	Mbar_A1657	-	transposase
1607	 43.40	0	2043481..2044404	+	307	73669167	-	Mbar_A1658	-	ATP-dependent protease La
1608	 39.16	0	2044577..2045074	-	165	73669168	-	Mbar_A1659	-	hypothetical protein
1609	 53.47	+2	2045260..2046918	-	552	73669169	-	Mbar_A1660	-	hypothetical protein
1610	 54.39	+2	2046932..2048242	-	436	73669170	-	Mbar_A1661	-	hypothetical protein
1611	 50.12	+1	2049308..2050552	+	414	73669171	-	Mbar_A1662	-	hypothetical protein
1612	 54.34	+2	2050767..2052056	-	429	73669172	-	Mbar_A1663	-	hypothetical protein
1613	 45.69	0	2052557..2053414	+	285	73669173	-	Mbar_A1664	-	putative phosphoesterase
1614	 44.85	0	2053961..2054125	+	54	73669174	-	Mbar_A1665	-	sensory transduction histidine kinase
1615	 41.09	0	2054203..2057040	+	945	73669175	-	Mbar_A1666	-	sensory transduction histidine kinase
1616	 41.99	0	2057553..2059100	+	515	73669176	lysS	Mbar_A1667	-	lysyl-tRNA synthetase
1617	 32.54	-1	2061235..2061738	-	167	73669177	-	Mbar_A1669	-	hypothetical protein
1618	 48.15	+1	2062060..2064927	+	955	73669178	-	Mbar_A1670	-	ATP-dependent RNA helicase
1619	 36.13	-1	2066352..2067317	+	321	73669179	-	Mbar_A1672	-	hypothetical protein
1620	 35.85	-1	2067767..2068282	+	171	73669180	-	Mbar_A1673	-	hypothetical protein
1621	 45.17	0	2068234..2069247	-	337	73669181	-	Mbar_A1674	-	ABC transporter, ATP-binding protein
1622	 44.01	0	2069307..2069999	-	230	73669182	-	Mbar_A1675	-	hypothetical protein
1623	 38.93	0	2069996..2071228	-	410	73669183	-	Mbar_A1676	-	hypothetical protein
1624	 40.16	0	2072190..2072702	+	170	73669184	-	Mbar_A1677	-	hypothetical protein
1625	 38.10	0	2072863..2072988	+	41	73669185	-	Mbar_A1678	-	nucleotidyltransferase
41.74	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.