IslandPathversion 1.0

IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.74 STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1445	 39.64	0	1834790..1835344	+	184	73669005	-	Mbar_A1485	-	putative surface layer protein
1446	 42.92	0	1835846..1836523	+	225	73669006	-	Mbar_A1486	-	hypothetical protein
1447	 35.12	-1	1836945..1839239	-	764	73669007	-	Mbar_A1487	-	hypothetical protein
1448	 38.62	0	1839565..1839810	+	81	73669008	-	Mbar_A1488	-	hypothetical protein
1449	 36.53	-1	1839839..1840213	+	124	73669009	-	Mbar_A1489	-	hypothetical protein
1450	 28.82	-2	1840374..1842014	+	546	73669010	-	Mbar_A1490	-	hypothetical protein
1451	 42.22	0	1843003..1843767	+	254	73669011	-	Mbar_A1491	-	hypothetical protein
1452	 46.77	+1	1843998..1844585	-	195	73669012	-	Mbar_A1492	-	cobalt-precorrin-6Y C(5)-methyltransferase
1453	 47.75	+1	1844624..1845643	-	339	73669013	cbiD	Mbar_A1493	-	cobalt-precorrin-6A synthase
1454	 44.44	0	1846299..1848377	-	692	73669014	-	Mbar_A1494	-	DNA mismatch repair protein MutL
1455	 44.91	0	1848453..1851155	-	900	73669015	-	Mbar_A1495	-	DNA mismatch repair protein
1456	 34.76	-1	1851875..1852576	-	233	73669016	-	Mbar_A1496	-	hypothetical protein
1457	 38.89	0	1852573..1852896	-	107	73669017	-	Mbar_A1497	-	PadR family transcriptional regulator
1458	 51.12	+1	1854537..1855070	-	177	73669018	-	Mbar_A1498	-	CDP-diacylglycerol-inositol 3-phosphatidyltransferase
1459	 46.13	0	1855678..1856826	+	382	73669019	-	Mbar_A1499	-	heterodisulfide reductase, subunit D
1460	 40.94	0	1857184..1857354	+	56	73669020	-	Mbar_A1500	-	nitrogenase iron protein
1461	 45.77	0	1857822..1858448	+	208	73669021	-	Mbar_A1501	-	dimethylamine corrinoid protein
1462	 46.48	0	1859993..1860646	+	217	73669022	-	Mbar_A1503	-	dimethylamine corrinoid protein
1463	 44.99	0	1861067..1862113	+	348	73669023	-	Mbar_A1504	-	trimethylamine permease
1464	 42.42	0	1862115..1862411	+	98	73669024	-	Mbar_A1505	-	hypothetical protein
1465	 45.79	0	1865051..1866664	+	537	73669025	lysK	Mbar_A1507	-	lysyl-tRNA synthetase
1466	 43.17	0	1866700..1867380	+	226	73669026	-	Mbar_A1508	-	hypothetical protein
1467	 40.70	0	1867595..1867852	-	85	73669027	-	Mbar_A1509	-	hypothetical protein
1468	 45.42	0	1867998..1868477	-	159	73669028	-	Mbar_A1510	-	deoxynucleoside 5'-monophosphate N-glycosidase
1469	 45.13	0	1868521..1871181	-	886	73669029	-	Mbar_A1511	-	peptidase family protein U32
1470	 45.77	0	1871387..1871788	-	133	73669030	-	Mbar_A1512	-	hypothetical protein
1471	 48.72	+1	1872080..1872313	-	77	73669031	-	Mbar_A1513	-	hypothetical protein
1472	 46.59	+1	1872539..1873360	-	273	73669032	-	Mbar_A1514	-	imidazole glycerol phosphate synthase subunit HisF
1473	 43.44	0	1873745..1874209	-	154	73669033	-	Mbar_A1515	-	hypothetical protein
1474	 46.46	0	1874611..1875090	-	159	73669034	-	Mbar_A1517	-	protein-L-isoaspartate O-methyltransferase
1475	 47.01	+1	1875065..1875700	-	211	73669035	-	Mbar_A1518	-	hypothetical protein
1476	 30.52	-2	1876148..1876396	-	82	73669036	-	Mbar_A1519	-	hypothetical protein
1477	 34.39	-1	1876415..1877452	-	345	73669037	-	Mbar_A1520	-	hypothetical protein
1478	 42.47	0	1878565..1878969	+	134	73669038	-	Mbar_A1522	-	hypothetical protein
1479	 43.07	0	1880094..1880771	+	225	73669039	-	Mbar_A1523	-	hypothetical protein
1480	 47.10	+1	1880768..1881508	+	246	73669040	ribB	Mbar_A1524	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
1481	 37.96	0	1881756..1882382	+	208	73669041	-	Mbar_A1525	-	transposase
1482	 37.12	0	1882457..1882720	+	87	73669042	-	Mbar_A1526	-	transposase
1483	 37.25	0	1883238..1884131	-	297	73669043	-	Mbar_A1527	-	surface layer protein B
1484	 38.73	0	1884716..1885123	+	135	73669044	-	Mbar_A1528	-	hypothetical protein
1485	 40.55	0	1886456..1887328	+	290	73669045	-	Mbar_A1529	-	hypothetical protein
1486	 39.81	0	1887702..1889786	+	694	73669046	-	Mbar_A1530	-	glycosyltransferase
1487	 37.58	0	1889801..1890577	+	258	73669047	-	Mbar_A1531	-	hypothetical protein
1488	 40.71	0	1890828..1891505	-	225	73669048	-	Mbar_A1532	-	hypothetical protein
1489	 45.26	0	1891593..1892246	-	217	73669049	-	Mbar_A1533	-	hypothetical protein
1490	 37.92	0	1893595..1895643	+	682	73669050	-	Mbar_A1535	-	sensory transduction histidine kinase
1491	 46.45	0	1897320..1898135	+	271	73669051	-	Mbar_A1538	-	hypothetical protein
1492	 45.40	0	1898278..1899735	+	485	73669052	-	Mbar_A1539	-	hypothetical protein
1493	 46.05	0	1900054..1901193	-	379	73669053	-	Mbar_A1540	-	hypothetical protein
1494	 41.91	0	1901362..1901769	-	135	73669054	-	Mbar_A1541	-	hypothetical protein
1495	 41.94	0	1902007..1902285	+	92	73669055	groES	Mbar_A1542	-	co-chaperonin GroES
1496	 45.31	0	1902408..1904018	+	536	73669056	groEL	Mbar_A1543	-	chaperonin GroEL
1497	 41.55	0	1904374..1905201	+	275	73669057	-	Mbar_A1544	-	hypothetical protein
1498	 43.77	0	1905864..1906505	+	213	73669058	-	Mbar_A1545	-	hypothetical protein
1499	 46.62	+1	1906776..1907972	+	398	73669059	-	Mbar_A1546	-	aspartate aminotransferase
1500	 44.84	0	1908225..1908989	-	254	73669060	-	Mbar_A1547	-	hypothetical protein
1501	 38.01	0	1910489..1911022	+	177	73669061	-	Mbar_A1549	-	antibiotic resistance protein
1502	 32.10	-2	1911200..1911442	-	80	73669062	-	Mbar_A1550	-	hypothetical protein
1503	 42.76	0	1911868..1913256	-	462	73669063	-	Mbar_A1551	-	nitrogenase, subunit K
1504	 41.88	0	1913272..1913622	-	116	73669064	-	Mbar_A1552	-	nitrogenase, subunit delta
1505	 42.56	0	1913615..1915207	-	530	73669065	-	Mbar_A1553	-	nitrogenase, subunit D
1506	 40.21	0	1915229..1915606	-	125	73669066	-	Mbar_A1554	-	nitrogen regulatory protein P-II
1507	 39.31	0	1915620..1915937	-	105	73669067	-	Mbar_A1555	-	P-II family nitrogen regulatory protein
1508	 39.38	0	1916699..1917856	-	385	73669068	-	Mbar_A1556	-	molybdate ABC transporter, ATP-binding protein
1509	 45.28	0	1917853..1918530	-	225	73669069	-	Mbar_A1557	-	molybdate ABC transporter, permease protein
1510	 43.17	0	1918553..1919386	-	277	73669070	-	Mbar_A1558	-	molybdenum ABC transporter, solute-binding protein
1511	 39.05	0	1920129..1920338	-	69	73669071	-	Mbar_A1559	-	molybdenum-pterin binding protein
1512	 43.15	0	1920948..1922312	+	454	73669072	-	Mbar_A1560	-	formylmethanofuran dehydrogenase, subunit B
1513	 48.80	+1	1922425..1924512	+	695	73669073	-	Mbar_A1561	-	formate dehydrogenase, alpha subunit (F420)
1514	 46.52	0	1924509..1925714	+	401	73669074	-	Mbar_A1562	-	formate dehydrogenase, beta subunit (F420)
1515	 38.30	0	1926495..1927178	+	227	73669075	-	Mbar_A1563	-	hypothetical protein
1516	 47.31	+1	1927571..1928944	-	457	73669076	-	Mbar_A1564	-	hypothetical protein
1517	 44.88	0	1929049..1929819	-	256	73669077	-	Mbar_A1565	-	3-isopropylmalate dehydratase
1518	 46.15	0	1929829..1929984	-	51	73669078	-	Mbar_A1566	-	H/ACA RNA-protein complex component Nop10p
1519	 44.61	0	1929991..1930797	-	268	73669079	-	Mbar_A1567	-	translation initiation factor IF-2 subunit alpha
1520	 43.39	0	1930871..1931059	-	62	73669080	rps27e	Mbar_A1568	-	30S ribosomal protein S27e
1521	 45.88	0	1931066..1931344	-	92	73669081	rpl44e	Mbar_A1569	-	50S ribosomal protein L44e
1522	 41.91	0	1931905..1932627	-	240	73669082	-	Mbar_A1570	-	hypothetical protein
1523	 43.13	0	1932593..1933837	-	414	73669083	-	Mbar_A1571	-	DNA primase small subunit
1524	 44.78	0	1934917..1935720	+	267	73669084	-	Mbar_A1572	-	hypothetical protein
1525	 39.05	0	1936142..1936456	+	104	73669085	-	Mbar_A1573	-	hypothetical protein
1526	 39.91	0	1936473..1938236	+	587	73669086	-	Mbar_A1574	-	hypothetical protein
1527	 45.70	0	1938410..1940803	+	797	73669087	-	Mbar_A1575	-	hypothetical protein
1528	 47.20	+1	1940800..1941852	+	350	73669088	-	Mbar_A1576	-	cell division protein pelota
1529	 42.06	0	1942949..1945183	+	744	73669089	-	Mbar_A1577	-	hypothetical protein
1530	 43.89	0	1945508..1946227	-	239	73669090	-	Mbar_A1578	-	hypothetical protein
1531	 44.75	0	1946481..1947356	-	291	73669091	-	Mbar_A1579	-	hypothetical protein
1532	 43.04	0	1947777..1948322	+	181	73669092	-	Mbar_A1580	-	2'-5' RNA ligase
1533	 45.74	0	1948443..1949522	-	359	73669093	-	Mbar_A1581	-	hypothetical protein
1534	 46.47	0	1950165..1951169	+	334	73669094	rfc	Mbar_A1582	-	replication factor C small subunit
1535	 47.17	+1	1951289..1951801	+	170	73669095	-	Mbar_A1583	-	putative small multi-drug export protein
1536	 37.62	0	1951985..1952194	-	69	73669096	-	Mbar_A1584	-	histone
1537	 45.87	0	1952823..1953779	+	318	73669097	-	Mbar_A1585	-	hypothetical protein
1538	 45.18	0	1954402..1956123	+	573	73669098	-	Mbar_A1586	-	pyruvate carboxylase subunit B
1539	 47.64	+1	1956145..1957626	+	493	73669099	-	Mbar_A1587	-	pyruvate carboxylase subunit A
1540	 44.75	0	1957734..1958714	+	326	73669100	-	Mbar_A1588	-	biotin--(acetyl-COA-carboxylase) synthetase
1541	 38.77	0	1958698..1959378	+	226	73669101	-	Mbar_A1589	-	hypothetical protein
1542	 41.04	0	1959862..1960821	-	319	73669102	-	Mbar_A1590	-	phosphoserine phosphatase
1543	 40.54	0	1960853..1961476	-	207	73669103	-	Mbar_A1591	-	hypothetical protein
1544	 41.92	0	1961600..1961890	-	96	73669104	-	Mbar_A1592	-	hypothetical protein
41.74	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.