IslandPathversion 1.0

IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.74 STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1411	 29.33	-2	1782395..1782844	+	149	73668971	-	Mbar_A1448	-	hypothetical protein
1412	 45.38	0	1783569..1783817	+	82	73668972	-	Mbar_A1450	-	ferrous iron transport protein A
1413	 44.16	0	1783819..1784049	+	76	73668973	-	Mbar_A1451	-	hypothetical protein
1414	 40.19	0	1784066..1786063	+	665	73668974	-	Mbar_A1452	-	ferrous iron transport protein B
1415	 42.63	0	1786076..1786516	+	146	73668975	-	Mbar_A1453	-	hypothetical protein
1416	 38.10	0	1786576..1786890	+	104	73668976	-	Mbar_A1454	-	hypothetical protein
1417	 36.00	-1	1787269..1787493	-	74	73668977	-	Mbar_A1455	-	hypothetical protein
1418	 32.77	-1	1787661..1788017	-	118	73668978	-	Mbar_A1456	-	hypothetical protein
1419	 37.89	0	1791399..1791881	+	160	73668979	-	Mbar_A1457	-	hypothetical protein
1420	 47.52	+1	1792392..1793441	+	349	73668980	-	Mbar_A1458	-	heme biosynthesis protein
1421	 42.08	0	1793453..1794001	+	182	73668981	-	Mbar_A1459	-	AsnC family transcriptional regulator
1422	 44.44	0	1794007..1794465	+	152	73668982	-	Mbar_A1460	-	AsnC family transcriptional regulator
1423	 45.48	0	1794541..1795215	+	224	73668983	-	Mbar_A1461	-	precorrin-2 oxidase / ferrochelatase
1424	 42.44	0	1795656..1797005	+	449	73668984	hemA	Mbar_A1462	-	glutamyl-tRNA reductase
1425	 45.85	0	1797260..1798234	+	324	73668985	-	Mbar_A1463	-	delta-aminolevulinic acid dehydratase
1426	 47.53	+1	1798765..1800039	+	424	73668986	-	Mbar_A1464	-	glutamate-1-semialdehyde aminotransferase
1427	 49.21	+1	1800088..1801038	+	316	73668987	hemC	Mbar_A1465	-	porphobilinogen deaminase
1428	 49.01	+1	1801127..1802032	+	301	73668988	-	Mbar_A1466	-	dihydroorotate dehydrogenase 1B
1429	 48.46	+1	1802032..1802811	+	259	73668989	-	Mbar_A1467	-	dihydroorotate dehydrogenase electron transfer subunit
1430	 46.26	0	1802885..1803619	+	244	73668990	-	Mbar_A1468	-	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase
1431	 45.75	0	1803619..1803924	+	101	73668991	-	Mbar_A1469	-	hypothetical protein
1432	 46.21	0	1804159..1805874	+	571	73668992	gltX	Mbar_A1470	-	glutamyl-tRNA synthetase
1433	 40.67	0	1806344..1808401	+	685	73668993	-	Mbar_A1471	-	cell surface protein
1434	 39.35	0	1808933..1810909	+	658	73668994	-	Mbar_A1472	-	cell surface protein
1435	 41.27	0	1811446..1813485	+	679	73668995	-	Mbar_A1473	-	cell surface protein
1436	 39.06	0	1814018..1815763	+	581	73668996	-	Mbar_A1474	-	cell surface protein
1437	 42.72	0	1817252..1818220	+	322	73668997	-	Mbar_A1476	-	hypothetical protein
1438	 40.91	0	1819547..1820602	+	351	73668998	-	Mbar_A1477	-	hypothetical protein
1439	 39.89	0	1821150..1823177	+	675	73668999	-	Mbar_A1478	-	cell surface protein
1440	 39.20	0	1823881..1825890	+	669	73669000	-	Mbar_A1479	-	cell surface protein
1441	 36.55	-1	1827972..1828469	+	165	73669001	-	Mbar_A1481	-	inorganic pyrophosphatase
1442	 41.27	0	1829533..1830351	+	272	73669002	-	Mbar_A1482	-	hypothetical protein
1443	 39.39	0	1831201..1833315	+	704	73669003	-	Mbar_A1483	-	sensory transduction histidine kinase
1444	 38.49	0	1833790..1834914	+	374	73669004	-	Mbar_A1484	-	hypothetical protein
1445	 39.64	0	1834790..1835344	+	184	73669005	-	Mbar_A1485	-	putative surface layer protein
1446	 42.92	0	1835846..1836523	+	225	73669006	-	Mbar_A1486	-	hypothetical protein
1447	 35.12	-1	1836945..1839239	-	764	73669007	-	Mbar_A1487	-	hypothetical protein
1448	 38.62	0	1839565..1839810	+	81	73669008	-	Mbar_A1488	-	hypothetical protein
1449	 36.53	-1	1839839..1840213	+	124	73669009	-	Mbar_A1489	-	hypothetical protein
1450	 28.82	-2	1840374..1842014	+	546	73669010	-	Mbar_A1490	-	hypothetical protein
1451	 42.22	0	1843003..1843767	+	254	73669011	-	Mbar_A1491	-	hypothetical protein
1452	 46.77	+1	1843998..1844585	-	195	73669012	-	Mbar_A1492	-	cobalt-precorrin-6Y C(5)-methyltransferase
1453	 47.75	+1	1844624..1845643	-	339	73669013	cbiD	Mbar_A1493	-	cobalt-precorrin-6A synthase
1454	 44.44	0	1846299..1848377	-	692	73669014	-	Mbar_A1494	-	DNA mismatch repair protein MutL
1455	 44.91	0	1848453..1851155	-	900	73669015	-	Mbar_A1495	-	DNA mismatch repair protein
1456	 34.76	-1	1851875..1852576	-	233	73669016	-	Mbar_A1496	-	hypothetical protein
1457	 38.89	0	1852573..1852896	-	107	73669017	-	Mbar_A1497	-	PadR family transcriptional regulator
1458	 51.12	+1	1854537..1855070	-	177	73669018	-	Mbar_A1498	-	CDP-diacylglycerol-inositol 3-phosphatidyltransferase
1459	 46.13	0	1855678..1856826	+	382	73669019	-	Mbar_A1499	-	heterodisulfide reductase, subunit D
1460	 40.94	0	1857184..1857354	+	56	73669020	-	Mbar_A1500	-	nitrogenase iron protein
1461	 45.77	0	1857822..1858448	+	208	73669021	-	Mbar_A1501	-	dimethylamine corrinoid protein
1462	 46.48	0	1859993..1860646	+	217	73669022	-	Mbar_A1503	-	dimethylamine corrinoid protein
1463	 44.99	0	1861067..1862113	+	348	73669023	-	Mbar_A1504	-	trimethylamine permease
1464	 42.42	0	1862115..1862411	+	98	73669024	-	Mbar_A1505	-	hypothetical protein
1465	 45.79	0	1865051..1866664	+	537	73669025	lysK	Mbar_A1507	-	lysyl-tRNA synthetase
1466	 43.17	0	1866700..1867380	+	226	73669026	-	Mbar_A1508	-	hypothetical protein
1467	 40.70	0	1867595..1867852	-	85	73669027	-	Mbar_A1509	-	hypothetical protein
1468	 45.42	0	1867998..1868477	-	159	73669028	-	Mbar_A1510	-	deoxynucleoside 5'-monophosphate N-glycosidase
1469	 45.13	0	1868521..1871181	-	886	73669029	-	Mbar_A1511	-	peptidase family protein U32
1470	 45.77	0	1871387..1871788	-	133	73669030	-	Mbar_A1512	-	hypothetical protein
1471	 48.72	+1	1872080..1872313	-	77	73669031	-	Mbar_A1513	-	hypothetical protein
1472	 46.59	+1	1872539..1873360	-	273	73669032	-	Mbar_A1514	-	imidazole glycerol phosphate synthase subunit HisF
1473	 43.44	0	1873745..1874209	-	154	73669033	-	Mbar_A1515	-	hypothetical protein
1474	 46.46	0	1874611..1875090	-	159	73669034	-	Mbar_A1517	-	protein-L-isoaspartate O-methyltransferase
1475	 47.01	+1	1875065..1875700	-	211	73669035	-	Mbar_A1518	-	hypothetical protein
1476	 30.52	-2	1876148..1876396	-	82	73669036	-	Mbar_A1519	-	hypothetical protein
1477	 34.39	-1	1876415..1877452	-	345	73669037	-	Mbar_A1520	-	hypothetical protein
1478	 42.47	0	1878565..1878969	+	134	73669038	-	Mbar_A1522	-	hypothetical protein
1479	 43.07	0	1880094..1880771	+	225	73669039	-	Mbar_A1523	-	hypothetical protein
1480	 47.10	+1	1880768..1881508	+	246	73669040	ribB	Mbar_A1524	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
1481	 37.96	0	1881756..1882382	+	208	73669041	-	Mbar_A1525	-	transposase
1482	 37.12	0	1882457..1882720	+	87	73669042	-	Mbar_A1526	-	transposase
1483	 37.25	0	1883238..1884131	-	297	73669043	-	Mbar_A1527	-	surface layer protein B
1484	 38.73	0	1884716..1885123	+	135	73669044	-	Mbar_A1528	-	hypothetical protein
1485	 40.55	0	1886456..1887328	+	290	73669045	-	Mbar_A1529	-	hypothetical protein
1486	 39.81	0	1887702..1889786	+	694	73669046	-	Mbar_A1530	-	glycosyltransferase
1487	 37.58	0	1889801..1890577	+	258	73669047	-	Mbar_A1531	-	hypothetical protein
1488	 40.71	0	1890828..1891505	-	225	73669048	-	Mbar_A1532	-	hypothetical protein
1489	 45.26	0	1891593..1892246	-	217	73669049	-	Mbar_A1533	-	hypothetical protein
1490	 37.92	0	1893595..1895643	+	682	73669050	-	Mbar_A1535	-	sensory transduction histidine kinase
1491	 46.45	0	1897320..1898135	+	271	73669051	-	Mbar_A1538	-	hypothetical protein
1492	 45.40	0	1898278..1899735	+	485	73669052	-	Mbar_A1539	-	hypothetical protein
1493	 46.05	0	1900054..1901193	-	379	73669053	-	Mbar_A1540	-	hypothetical protein
1494	 41.91	0	1901362..1901769	-	135	73669054	-	Mbar_A1541	-	hypothetical protein
1495	 41.94	0	1902007..1902285	+	92	73669055	groES	Mbar_A1542	-	co-chaperonin GroES
1496	 45.31	0	1902408..1904018	+	536	73669056	groEL	Mbar_A1543	-	chaperonin GroEL
1497	 41.55	0	1904374..1905201	+	275	73669057	-	Mbar_A1544	-	hypothetical protein
1498	 43.77	0	1905864..1906505	+	213	73669058	-	Mbar_A1545	-	hypothetical protein
1499	 46.62	+1	1906776..1907972	+	398	73669059	-	Mbar_A1546	-	aspartate aminotransferase
1500	 44.84	0	1908225..1908989	-	254	73669060	-	Mbar_A1547	-	hypothetical protein
1501	 38.01	0	1910489..1911022	+	177	73669061	-	Mbar_A1549	-	antibiotic resistance protein
1502	 32.10	-2	1911200..1911442	-	80	73669062	-	Mbar_A1550	-	hypothetical protein
1503	 42.76	0	1911868..1913256	-	462	73669063	-	Mbar_A1551	-	nitrogenase, subunit K
1504	 41.88	0	1913272..1913622	-	116	73669064	-	Mbar_A1552	-	nitrogenase, subunit delta
1505	 42.56	0	1913615..1915207	-	530	73669065	-	Mbar_A1553	-	nitrogenase, subunit D
1506	 40.21	0	1915229..1915606	-	125	73669066	-	Mbar_A1554	-	nitrogen regulatory protein P-II
1507	 39.31	0	1915620..1915937	-	105	73669067	-	Mbar_A1555	-	P-II family nitrogen regulatory protein
1508	 39.38	0	1916699..1917856	-	385	73669068	-	Mbar_A1556	-	molybdate ABC transporter, ATP-binding protein
1509	 45.28	0	1917853..1918530	-	225	73669069	-	Mbar_A1557	-	molybdate ABC transporter, permease protein
1510	 43.17	0	1918553..1919386	-	277	73669070	-	Mbar_A1558	-	molybdenum ABC transporter, solute-binding protein
41.74	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.