IslandPathversion 1.0

IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.74 STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1379	 28.28	-2	1742959..1745667	-	902	73668939	-	Mbar_A1415	-	hypothetical protein
1380	 31.36	-2	1745619..1746581	-	320	73668940	-	Mbar_A1416	-	phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase
1381	 45.13	0	1747255..1748220	-	321	73668941	-	Mbar_A1417	-	dimethylallyltranstransferase / geranyltranstransferase
1382	 47.40	+1	1748256..1749599	-	447	73668942	-	Mbar_A1418	-	metallo-beta-lactamase
1383	 49.09	+1	1750942..1752039	-	365	73668943	-	Mbar_A1419	-	isopentenyl pyrophosphate isomerase
1384	 45.21	0	1752043..1752825	-	260	73668944	-	Mbar_A1420	-	amino acid kinase
1385	 43.82	0	1752923..1753828	-	301	73668945	-	Mbar_A1421	-	mevalonate kinase
1386	 44.24	0	1754129..1754926	-	265	73668946	-	Mbar_A1422	-	hypothetical protein
1387	 45.30	0	1754997..1755740	-	247	73668947	rps2P	Mbar_A1423	-	30S ribosomal protein S2
1388	 44.81	0	1755811..1755993	-	60	73668948	-	Mbar_A1424	-	DNA-directed RNA polymerase, subunit K
1389	 46.03	0	1756182..1756370	-	62	73668949	-	Mbar_A1425	-	DNA-directed RNA polymerase subunit N
1390	 45.19	0	1756375..1756779	-	134	73668950	rps9p	Mbar_A1426	-	30S ribosomal protein S9P
1391	 45.39	0	1756793..1757215	-	140	73668951	rpl13p	Mbar_A1427	-	50S ribosomal protein L13P
1392	 46.19	0	1757226..1757645	-	139	73668952	-	Mbar_A1428	-	50S ribosomal protein L18e
1393	 43.89	0	1758207..1759835	+	542	73668953	-	Mbar_A1429	-	indolepyruvate decarboxylase
1394	 41.07	0	1759972..1760475	-	167	73668954	-	Mbar_A1430	-	hypothetical protein
1395	 45.80	0	1760876..1762447	-	523	73668955	-	Mbar_A1431	-	D-3-phosphoglycerate dehydrogenase
1396	 46.09	0	1762631..1763500	-	289	73668956	-	Mbar_A1432	-	hypothetical protein
1397	 46.53	+1	1763538..1764863	-	441	73668957	-	Mbar_A1433	-	replication factor A
1398	 44.24	0	1765178..1766305	+	375	73668958	-	Mbar_A1434	-	cell surface protein
1399	 41.77	0	1766707..1767714	-	335	73668959	-	Mbar_A1435	-	hypothetical protein
1400	 41.89	0	1770273..1771184	+	303	73668960	-	Mbar_A1437	-	cobalt-zinc-cadmium resistance protein
1401	 49.36	+1	1771190..1772287	+	365	73668961	-	Mbar_A1438	-	chorismate synthase
1402	 30.67	-2	1772711..1773349	-	212	73668962	-	Mbar_A1439	-	methyltransferase
1403	 35.87	-1	1773978..1774253	+	91	73668963	-	Mbar_A1440	-	hypothetical protein
1404	 41.79	0	1774419..1776275	+	618	73668964	-	Mbar_A1441	-	hypothetical protein
1405	 39.85	0	1776457..1776993	+	178	73668965	-	Mbar_A1442	-	hypothetical protein
1406	 28.70	-2	1777264..1777716	+	150	73668966	-	Mbar_A1443	-	hypothetical protein
1407	 33.13	-1	1777722..1778204	+	160	73668967	-	Mbar_A1444	-	hypothetical protein
1408	 39.45	0	1778902..1779408	+	168	73668968	-	Mbar_A1445	-	hypothetical protein
1409	 38.85	0	1779470..1780648	+	392	73668969	-	Mbar_A1446	-	hypothetical protein
1410	 40.04	0	1781627..1782163	+	178	73668970	-	Mbar_A1447	-	hypothetical protein
1411	 29.33	-2	1782395..1782844	+	149	73668971	-	Mbar_A1448	-	hypothetical protein
1412	 45.38	0	1783569..1783817	+	82	73668972	-	Mbar_A1450	-	ferrous iron transport protein A
1413	 44.16	0	1783819..1784049	+	76	73668973	-	Mbar_A1451	-	hypothetical protein
1414	 40.19	0	1784066..1786063	+	665	73668974	-	Mbar_A1452	-	ferrous iron transport protein B
1415	 42.63	0	1786076..1786516	+	146	73668975	-	Mbar_A1453	-	hypothetical protein
1416	 38.10	0	1786576..1786890	+	104	73668976	-	Mbar_A1454	-	hypothetical protein
1417	 36.00	-1	1787269..1787493	-	74	73668977	-	Mbar_A1455	-	hypothetical protein
1418	 32.77	-1	1787661..1788017	-	118	73668978	-	Mbar_A1456	-	hypothetical protein
1419	 37.89	0	1791399..1791881	+	160	73668979	-	Mbar_A1457	-	hypothetical protein
1420	 47.52	+1	1792392..1793441	+	349	73668980	-	Mbar_A1458	-	heme biosynthesis protein
1421	 42.08	0	1793453..1794001	+	182	73668981	-	Mbar_A1459	-	AsnC family transcriptional regulator
1422	 44.44	0	1794007..1794465	+	152	73668982	-	Mbar_A1460	-	AsnC family transcriptional regulator
1423	 45.48	0	1794541..1795215	+	224	73668983	-	Mbar_A1461	-	precorrin-2 oxidase / ferrochelatase
1424	 42.44	0	1795656..1797005	+	449	73668984	hemA	Mbar_A1462	-	glutamyl-tRNA reductase
1425	 45.85	0	1797260..1798234	+	324	73668985	-	Mbar_A1463	-	delta-aminolevulinic acid dehydratase
1426	 47.53	+1	1798765..1800039	+	424	73668986	-	Mbar_A1464	-	glutamate-1-semialdehyde aminotransferase
1427	 49.21	+1	1800088..1801038	+	316	73668987	hemC	Mbar_A1465	-	porphobilinogen deaminase
1428	 49.01	+1	1801127..1802032	+	301	73668988	-	Mbar_A1466	-	dihydroorotate dehydrogenase 1B
1429	 48.46	+1	1802032..1802811	+	259	73668989	-	Mbar_A1467	-	dihydroorotate dehydrogenase electron transfer subunit
1430	 46.26	0	1802885..1803619	+	244	73668990	-	Mbar_A1468	-	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase
1431	 45.75	0	1803619..1803924	+	101	73668991	-	Mbar_A1469	-	hypothetical protein
1432	 46.21	0	1804159..1805874	+	571	73668992	gltX	Mbar_A1470	-	glutamyl-tRNA synthetase
1433	 40.67	0	1806344..1808401	+	685	73668993	-	Mbar_A1471	-	cell surface protein
1434	 39.35	0	1808933..1810909	+	658	73668994	-	Mbar_A1472	-	cell surface protein
1435	 41.27	0	1811446..1813485	+	679	73668995	-	Mbar_A1473	-	cell surface protein
1436	 39.06	0	1814018..1815763	+	581	73668996	-	Mbar_A1474	-	cell surface protein
1437	 42.72	0	1817252..1818220	+	322	73668997	-	Mbar_A1476	-	hypothetical protein
1438	 40.91	0	1819547..1820602	+	351	73668998	-	Mbar_A1477	-	hypothetical protein
1439	 39.89	0	1821150..1823177	+	675	73668999	-	Mbar_A1478	-	cell surface protein
1440	 39.20	0	1823881..1825890	+	669	73669000	-	Mbar_A1479	-	cell surface protein
1441	 36.55	-1	1827972..1828469	+	165	73669001	-	Mbar_A1481	-	inorganic pyrophosphatase
1442	 41.27	0	1829533..1830351	+	272	73669002	-	Mbar_A1482	-	hypothetical protein
1443	 39.39	0	1831201..1833315	+	704	73669003	-	Mbar_A1483	-	sensory transduction histidine kinase
1444	 38.49	0	1833790..1834914	+	374	73669004	-	Mbar_A1484	-	hypothetical protein
1445	 39.64	0	1834790..1835344	+	184	73669005	-	Mbar_A1485	-	putative surface layer protein
1446	 42.92	0	1835846..1836523	+	225	73669006	-	Mbar_A1486	-	hypothetical protein
1447	 35.12	-1	1836945..1839239	-	764	73669007	-	Mbar_A1487	-	hypothetical protein
1448	 38.62	0	1839565..1839810	+	81	73669008	-	Mbar_A1488	-	hypothetical protein
1449	 36.53	-1	1839839..1840213	+	124	73669009	-	Mbar_A1489	-	hypothetical protein
1450	 28.82	-2	1840374..1842014	+	546	73669010	-	Mbar_A1490	-	hypothetical protein
1451	 42.22	0	1843003..1843767	+	254	73669011	-	Mbar_A1491	-	hypothetical protein
1452	 46.77	+1	1843998..1844585	-	195	73669012	-	Mbar_A1492	-	cobalt-precorrin-6Y C(5)-methyltransferase
1453	 47.75	+1	1844624..1845643	-	339	73669013	cbiD	Mbar_A1493	-	cobalt-precorrin-6A synthase
1454	 44.44	0	1846299..1848377	-	692	73669014	-	Mbar_A1494	-	DNA mismatch repair protein MutL
1455	 44.91	0	1848453..1851155	-	900	73669015	-	Mbar_A1495	-	DNA mismatch repair protein
1456	 34.76	-1	1851875..1852576	-	233	73669016	-	Mbar_A1496	-	hypothetical protein
1457	 38.89	0	1852573..1852896	-	107	73669017	-	Mbar_A1497	-	PadR family transcriptional regulator
1458	 51.12	+1	1854537..1855070	-	177	73669018	-	Mbar_A1498	-	CDP-diacylglycerol-inositol 3-phosphatidyltransferase
1459	 46.13	0	1855678..1856826	+	382	73669019	-	Mbar_A1499	-	heterodisulfide reductase, subunit D
1460	 40.94	0	1857184..1857354	+	56	73669020	-	Mbar_A1500	-	nitrogenase iron protein
1461	 45.77	0	1857822..1858448	+	208	73669021	-	Mbar_A1501	-	dimethylamine corrinoid protein
1462	 46.48	0	1859993..1860646	+	217	73669022	-	Mbar_A1503	-	dimethylamine corrinoid protein
1463	 44.99	0	1861067..1862113	+	348	73669023	-	Mbar_A1504	-	trimethylamine permease
1464	 42.42	0	1862115..1862411	+	98	73669024	-	Mbar_A1505	-	hypothetical protein
1465	 45.79	0	1865051..1866664	+	537	73669025	lysK	Mbar_A1507	-	lysyl-tRNA synthetase
1466	 43.17	0	1866700..1867380	+	226	73669026	-	Mbar_A1508	-	hypothetical protein
1467	 40.70	0	1867595..1867852	-	85	73669027	-	Mbar_A1509	-	hypothetical protein
1468	 45.42	0	1867998..1868477	-	159	73669028	-	Mbar_A1510	-	deoxynucleoside 5'-monophosphate N-glycosidase
1469	 45.13	0	1868521..1871181	-	886	73669029	-	Mbar_A1511	-	peptidase family protein U32
1470	 45.77	0	1871387..1871788	-	133	73669030	-	Mbar_A1512	-	hypothetical protein
1471	 48.72	+1	1872080..1872313	-	77	73669031	-	Mbar_A1513	-	hypothetical protein
1472	 46.59	+1	1872539..1873360	-	273	73669032	-	Mbar_A1514	-	imidazole glycerol phosphate synthase subunit HisF
1473	 43.44	0	1873745..1874209	-	154	73669033	-	Mbar_A1515	-	hypothetical protein
1474	 46.46	0	1874611..1875090	-	159	73669034	-	Mbar_A1517	-	protein-L-isoaspartate O-methyltransferase
1475	 47.01	+1	1875065..1875700	-	211	73669035	-	Mbar_A1518	-	hypothetical protein
1476	 30.52	-2	1876148..1876396	-	82	73669036	-	Mbar_A1519	-	hypothetical protein
1477	 34.39	-1	1876415..1877452	-	345	73669037	-	Mbar_A1520	-	hypothetical protein
1478	 42.47	0	1878565..1878969	+	134	73669038	-	Mbar_A1522	-	hypothetical protein
41.74	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.