IslandPathversion 1.0

IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.74 STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1302	 35.44	-1	1646712..1647803	-	363	73668862	-	Mbar_A1335	-	hypothetical protein
1303	 37.67	0	1647855..1648223	-	122	73668863	-	Mbar_A1336	-	hypothetical protein
1304	 46.11	0	1648491..1649828	+	445	73668864	-	Mbar_A1337	-	hypothetical protein
1305	 46.83	+1	1650017..1650505	+	162	73668865	leuD	Mbar_A1338	-	3-isopropylmalate dehydratase small subunit
1306	 47.25	+1	1650601..1651728	+	375	73668866	-	Mbar_A1339	-	3-isopropylmalate dehydrogenase
1307	 37.25	0	1653694..1654305	-	203	73668867	-	Mbar_A1341	-	dipeptide ABC transporter, ATP-binding protein
1308	 41.13	0	1654295..1655218	-	307	73668868	-	Mbar_A1342	-	dipeptide ABC transporter, ATP-binding protein
1309	 42.42	0	1655681..1656538	-	285	73668869	-	Mbar_A1343	-	dipeptide ABC transporter, permease protein
1310	 41.89	0	1656535..1657527	-	330	73668870	-	Mbar_A1344	-	dipeptide ABC transporter, permease protein
1311	 44.91	0	1657967..1659625	-	552	73668871	-	Mbar_A1345	-	dipeptide ABC transporter, solute-binding protein
1312	 39.32	0	1662066..1662884	-	272	73668872	-	Mbar_A1346	-	transposase
1313	 41.55	0	1663148..1663561	+	137	73668873	-	Mbar_A1347	-	hypothetical protein
1314	 41.93	0	1663707..1664276	+	189	73668874	-	Mbar_A1348	-	hypothetical protein
1315	 32.34	-1	1664561..1664761	+	66	73668875	-	Mbar_A1349	-	hypothetical protein
1316	 42.68	0	1664962..1665528	+	188	73668876	-	Mbar_A1350	-	hypothetical protein
1317	 38.83	0	1665910..1666437	+	175	73668877	-	Mbar_A1351	-	hypothetical protein
1318	 37.48	0	1666575..1667273	+	232	73668878	-	Mbar_A1352	-	hypothetical protein
1319	 34.79	-1	1667328..1668428	+	366	73668879	-	Mbar_A1353	-	hypothetical protein
1320	 33.52	-1	1668609..1669703	+	364	73668880	-	Mbar_A1354	-	hypothetical protein
1321	 33.87	-1	1669693..1672479	+	928	73668881	-	Mbar_A1355	-	hypothetical protein
1322	 37.99	0	1672480..1673445	+	321	73668882	-	Mbar_A1356	-	hypothetical protein
1323	 33.59	-1	1673435..1673827	+	130	73668883	-	Mbar_A1357	-	hypothetical protein
1324	 34.55	-1	1673829..1674653	+	274	73668884	-	Mbar_A1358	-	hypothetical protein
1325	 45.13	0	1675249..1675731	+	160	73668885	-	Mbar_A1359	-	hypothetical protein
1326	 47.70	+1	1675950..1677077	+	375	73668886	-	Mbar_A1360	-	hypothetical protein
1327	 48.63	+1	1677210..1679981	-	923	73668887	alaS	Mbar_A1361	-	alanyl-tRNA synthetase
1328	 42.91	0	1680491..1680751	-	86	73668888	-	Mbar_A1362	-	hypothetical protein
1329	 38.17	0	1681500..1682285	+	261	73668889	-	Mbar_A1363	-	hypothetical protein
1330	 44.12	0	1682603..1683010	-	135	73668890	-	Mbar_A1364	-	hypothetical protein
1331	 46.17	0	1683886..1684407	-	173	73668891	-	Mbar_A1365	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
1332	 38.18	0	1684677..1687154	+	825	73668892	-	Mbar_A1366	-	hypothetical protein
1333	 40.93	0	1687236..1687775	-	179	73668893	-	Mbar_A1367	-	molybdenum cofactor biosynthesis protein B
1334	 44.50	0	1688053..1689234	-	393	73668894	-	Mbar_A1368	-	hypothetical protein
1335	 42.83	0	1689735..1691714	+	659	73668895	-	Mbar_A1369	-	glycogen debranching enzyme
1336	 44.92	0	1692102..1693223	+	373	73668896	-	Mbar_A1370	-	hypothetical protein
1337	 48.85	+1	1693722..1694243	+	173	73668897	rpl10e	Mbar_A1371	-	50S ribosomal protein L10e
1338	 48.28	+1	1694279..1694887	+	202	73668898	-	Mbar_A1372	-	translation initiation factor IF-2 subunit beta
1339	 44.96	0	1695146..1696384	+	412	73668899	-	Mbar_A1373	-	metallo cofactor biosynthesis protein
1340	 46.98	+1	1696691..1698112	+	473	73668900	-	Mbar_A1374	-	tryptophanyl-tRNA synthetase
1341	 48.82	+1	1698283..1699761	+	492	73668901	pheS	Mbar_A1375	-	phenylalanyl-tRNA synthetase subunit alpha
1342	 44.27	0	1700653..1702974	-	773	73668902	-	Mbar_A1376	-	DNA helicase RepD
1343	 46.34	0	1703295..1703663	-	122	73668903	-	Mbar_A1377	-	MarR family transcriptional regulator
1344	 46.77	+1	1703917..1704474	+	185	73668904	-	Mbar_A1378	-	iron-sulfur flavoprotein
1345	 49.14	+1	1704663..1705187	+	174	73668905	-	Mbar_A1379	-	NADPH-flavin oxidoreductase
1346	 38.15	0	1705352..1705600	+	82	73668906	-	Mbar_A1380	-	hypothetical protein
1347	 35.74	-1	1705616..1705906	+	96	73668907	-	Mbar_A1381	-	hypothetical protein
1348	 42.32	0	1706210..1706476	-	88	73668908	-	Mbar_A1382	-	hypothetical protein
1349	 37.63	0	1706488..1707231	-	247	73668909	-	Mbar_A1383	-	hypothetical protein
1350	 37.56	0	1707240..1707665	-	141	73668910	-	Mbar_A1384	-	hypothetical protein
1351	 42.71	0	1708120..1708695	+	191	73668911	-	Mbar_A1385	-	iron-sulfur flavoprotein
1352	 46.38	0	1708778..1709551	-	257	73668912	-	Mbar_A1386	-	fdhD protein
1353	 40.56	0	1711222..1712217	-	331	73668913	-	Mbar_A1388	-	hypothetical protein
1354	 40.22	0	1712259..1713347	-	362	73668914	-	Mbar_A1389	-	hypothetical protein
1355	 41.57	0	1713648..1714181	+	177	73668915	-	Mbar_A1390	-	hypothetical protein
1356	 45.04	0	1714788..1715069	+	93	73668916	-	Mbar_A1391	-	hypothetical protein
1357	 44.41	0	1715483..1716493	-	336	73668917	-	Mbar_A1392	-	methyltransferase
1358	 44.60	0	1716556..1717212	-	218	73668918	-	Mbar_A1393	-	hypothetical protein
1359	 48.13	+1	1717375..1718388	-	337	73668919	tfb	Mbar_A1394	-	transcription initiation factor IIB
1360	 38.70	0	1718580..1718840	-	86	73668920	-	Mbar_A1395	-	H/ACA RNA-protein complex component Gar1
1361	 46.58	+1	1719171..1721819	+	882	73668921	-	Mbar_A1396	-	pyruvate phosphate dikinase
1362	 36.98	0	1723225..1724514	+	429	73668922	-	Mbar_A1397	-	transposase
1363	 32.35	-1	1724474..1724779	-	101	73668923	-	Mbar_A1398	-	transposase, putative
1364	 33.91	-1	1724837..1725532	-	231	73668924	-	Mbar_A1399	-	transposase, putative
1365	 28.90	-2	1727076..1728452	-	458	73668925	-	Mbar_A1401	-	hypothetical protein
1366	 37.68	0	1729282..1730409	-	375	73668926	-	Mbar_A1402	-	hypothetical protein
1367	 35.32	-1	1730402..1731358	-	318	73668927	-	Mbar_A1403	-	hypothetical protein
1368	 34.10	-1	1731334..1731981	-	215	73668928	-	Mbar_A1404	-	hypothetical protein
1369	 28.50	-2	1732268..1733653	-	461	73668929	-	Mbar_A1405	-	hypothetical protein
1370	 32.60	-1	1733637..1734593	-	318	73668930	-	Mbar_A1406	-	phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase
1371	 35.58	-1	1735187..1736431	+	414	73668931	-	Mbar_A1407	-	transposase
1372	 35.90	-1	1736774..1738018	+	414	73668932	-	Mbar_A1408	-	transposase
1373	 33.62	-1	1738262..1738615	+	117	73668933	-	Mbar_A1409	-	transposase
1374	 27.66	-2	1738858..1739298	+	146	73668934	-	Mbar_A1410	-	transposase
1375	 28.73	-2	1739307..1740218	-	303	73668935	-	Mbar_A1411	-	hypothetical protein
1376	 38.03	0	1740258..1741385	-	375	73668936	-	Mbar_A1412	-	hypothetical protein
1377	 34.90	-1	1741378..1742334	-	318	73668937	-	Mbar_A1413	-	hypothetical protein
1378	 35.97	-1	1742310..1742954	-	214	73668938	-	Mbar_A1414	-	hypothetical protein
1379	 28.28	-2	1742959..1745667	-	902	73668939	-	Mbar_A1415	-	hypothetical protein
1380	 31.36	-2	1745619..1746581	-	320	73668940	-	Mbar_A1416	-	phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase
1381	 45.13	0	1747255..1748220	-	321	73668941	-	Mbar_A1417	-	dimethylallyltranstransferase / geranyltranstransferase
1382	 47.40	+1	1748256..1749599	-	447	73668942	-	Mbar_A1418	-	metallo-beta-lactamase
1383	 49.09	+1	1750942..1752039	-	365	73668943	-	Mbar_A1419	-	isopentenyl pyrophosphate isomerase
1384	 45.21	0	1752043..1752825	-	260	73668944	-	Mbar_A1420	-	amino acid kinase
1385	 43.82	0	1752923..1753828	-	301	73668945	-	Mbar_A1421	-	mevalonate kinase
1386	 44.24	0	1754129..1754926	-	265	73668946	-	Mbar_A1422	-	hypothetical protein
1387	 45.30	0	1754997..1755740	-	247	73668947	rps2P	Mbar_A1423	-	30S ribosomal protein S2
1388	 44.81	0	1755811..1755993	-	60	73668948	-	Mbar_A1424	-	DNA-directed RNA polymerase, subunit K
1389	 46.03	0	1756182..1756370	-	62	73668949	-	Mbar_A1425	-	DNA-directed RNA polymerase subunit N
1390	 45.19	0	1756375..1756779	-	134	73668950	rps9p	Mbar_A1426	-	30S ribosomal protein S9P
1391	 45.39	0	1756793..1757215	-	140	73668951	rpl13p	Mbar_A1427	-	50S ribosomal protein L13P
1392	 46.19	0	1757226..1757645	-	139	73668952	-	Mbar_A1428	-	50S ribosomal protein L18e
1393	 43.89	0	1758207..1759835	+	542	73668953	-	Mbar_A1429	-	indolepyruvate decarboxylase
1394	 41.07	0	1759972..1760475	-	167	73668954	-	Mbar_A1430	-	hypothetical protein
1395	 45.80	0	1760876..1762447	-	523	73668955	-	Mbar_A1431	-	D-3-phosphoglycerate dehydrogenase
1396	 46.09	0	1762631..1763500	-	289	73668956	-	Mbar_A1432	-	hypothetical protein
1397	 46.53	+1	1763538..1764863	-	441	73668957	-	Mbar_A1433	-	replication factor A
1398	 44.24	0	1765178..1766305	+	375	73668958	-	Mbar_A1434	-	cell surface protein
1399	 41.77	0	1766707..1767714	-	335	73668959	-	Mbar_A1435	-	hypothetical protein
1400	 41.89	0	1770273..1771184	+	303	73668960	-	Mbar_A1437	-	cobalt-zinc-cadmium resistance protein
1401	 49.36	+1	1771190..1772287	+	365	73668961	-	Mbar_A1438	-	chorismate synthase
41.74	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.