IslandPathversion 1.0

IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.74 STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1227	 46.18	0	1563688..1564014	-	108	73668787	-	Mbar_A1259	-	tetrahydromethanopterin S-methyltransferase subunit B
1228	 47.51	+1	1564011..1564814	-	267	73668788	-	Mbar_A1260	-	tetrahydromethanopterin S-methyltransferase subunit C
1229	 47.68	+1	1564816..1565568	-	250	73668789	-	Mbar_A1261	-	tetrahydromethanopterin S-methyltransferase subunit D
1230	 45.43	0	1565565..1566473	-	302	73668790	-	Mbar_A1262	-	tetrahydromethanopterin S-methyltransferase subunit E
1231	 43.33	0	1567284..1568093	+	269	73668791	-	Mbar_A1263	-	hypothetical protein
1232	 44.22	0	1568166..1570085	-	639	73668792	-	Mbar_A1264	-	sodium:proline symporter (proline permease)
1233	 42.35	0	1571283..1571870	+	195	73668793	-	Mbar_A1265	-	putative molybdenum transport protein ModA
1234	 31.08	-2	1572434..1573498	+	354	73668794	-	Mbar_A1266	-	transposase, putative
1235	 42.12	0	1573832..1574890	-	352	73668795	-	Mbar_A1267	-	hypothetical protein
1236	 38.58	0	1574883..1576025	-	380	73668796	-	Mbar_A1268	-	hypothetical protein
1237	 43.12	0	1576022..1578268	-	748	73668797	-	Mbar_A1269	-	RND superfamily protein
1238	 37.29	0	1578726..1579508	+	260	73668798	-	Mbar_A1270	-	transcriptional regulator
1239	 45.10	0	1579730..1580392	+	220	73668799	-	Mbar_A1271	-	hypothetical protein
1240	 41.36	0	1580455..1580778	+	107	73668800	-	Mbar_A1272	-	putative ribonuclease P subunit RPR2
1241	 46.47	0	1580945..1581256	-	103	73668801	-	Mbar_A1273	-	signal recognition particle protein Srp19
1242	 41.09	0	1581413..1581670	+	85	73668802	-	Mbar_A1274	-	hypothetical protein
1243	 40.97	0	1581883..1582746	+	287	73668803	-	Mbar_A1275	-	hypothetical protein
1244	 39.19	0	1582779..1583546	+	255	73668804	-	Mbar_A1276	-	hypothetical protein
1245	 29.88	-2	1584166..1584570	+	134	73668805	-	Mbar_A1277	-	hypothetical protein
1246	 40.00	0	1585385..1585624	-	79	73668806	-	Mbar_A1278	-	hypothetical protein
1247	 44.62	0	1586067..1586828	-	253	73668807	-	Mbar_A1279	-	UbiE/COQ5 methyltransferase
1248	 46.75	+1	1586825..1587532	-	235	73668808	-	Mbar_A1280	-	oligopeptide ABC transporter, ATP-binding protein
1249	 45.75	0	1587508..1588449	-	313	73668809	-	Mbar_A1281	-	oligopeptide ABC transporter, ATP-binding protein
1250	 46.18	0	1588446..1589348	-	300	73668810	-	Mbar_A1282	-	oligopeptide ABC transporter, permease protein
1251	 45.65	0	1589353..1590294	-	313	73668811	-	Mbar_A1283	-	oligopeptide ABC transporter, permease protein
1252	 43.77	0	1590414..1592051	-	545	73668812	-	Mbar_A1284	-	oligopeptide ABC transporter, solute-binding protein
1253	 46.01	0	1592080..1592868	-	262	73668813	-	Mbar_A1285	-	hypothetical protein
1254	 42.95	0	1593420..1594532	+	370	73668814	-	Mbar_A1286	-	ABC transporter, solute-binding protein
1255	 44.78	0	1595272..1595874	+	200	73668815	-	Mbar_A1287	-	formylmethanofuran dehydrogenase, subunit E
1256	 47.74	+1	1595893..1596933	+	346	73668816	-	Mbar_A1288	-	formylmethanofuran dehydrogenase, subunit F
1257	 45.81	0	1596934..1598688	+	584	73668817	-	Mbar_A1289	-	formylmethanofuran dehydrogenase, subunit A
1258	 47.90	+1	1598693..1599598	+	301	73668818	-	Mbar_A1290	-	formylmethanofuran dehydrogenase, subunit C
1259	 44.36	0	1599609..1599998	+	129	73668819	-	Mbar_A1291	-	formylmethanofuran dehydrogenase, subunit D
1260	 48.16	+1	1600001..1601302	+	433	73668820	-	Mbar_A1292	-	formylmethanofuran dehydrogenase, subunit B
1261	 42.59	0	1601704..1602459	+	251	73668821	-	Mbar_A1293	-	outer membrane protein
1262	 43.58	0	1602974..1604086	-	370	73668822	-	Mbar_A1294	-	phosphoserine aminotransferase
1263	 37.24	0	1604676..1605290	+	204	73668823	-	Mbar_A1295	-	phosphoribosylglycinamide formyltransferase
1264	 38.55	0	1605712..1606458	-	248	73668824	-	Mbar_A1296	-	hypothetical protein
1265	 43.10	0	1606924..1607394	-	156	73668825	-	Mbar_A1297	-	hypothetical protein
1266	 39.34	0	1607902..1608417	-	171	73668826	-	Mbar_A1298	-	hypothetical protein
1267	 36.93	-1	1609109..1609414	-	101	73668827	-	Mbar_A1299	-	hypothetical protein
1268	 37.13	0	1609779..1610780	+	333	73668828	-	Mbar_A1300	-	hypothetical protein
1269	 29.52	-2	1611196..1611588	-	130	73668829	-	Mbar_A1301	-	hypothetical protein
1270	 31.50	-2	1611934..1612206	+	90	73668830	-	Mbar_A1302	-	hypothetical protein
1271	 43.67	0	1612744..1613652	-	302	73668831	-	Mbar_A1303	-	hypothetical protein
1272	 45.58	0	1613684..1614475	-	263	73668832	-	Mbar_A1304	-	nicotinate-nucleotide pyrophosphorylase (carboxylating)
1273	 45.48	0	1614723..1615784	-	353	73668833	-	Mbar_A1305	-	molybdate ABC transporter, ATP-binding protein
1274	 44.61	0	1615781..1616587	-	268	73668834	-	Mbar_A1306	-	molybdate ABC transporter, permease protein
1275	 43.59	0	1616575..1617393	-	272	73668835	-	Mbar_A1307	-	molybdate-binding protein
1276	 41.90	0	1617557..1618198	-	213	73668836	-	Mbar_A1308	-	putative NAD(P)H oxidoreductase(quinone)
1277	 37.97	0	1618456..1618692	-	78	73668837	-	Mbar_A1309	-	hypothetical protein
1278	 47.40	+1	1618715..1619290	-	191	73668838	hisB	Mbar_A1310	-	imidazoleglycerol-phosphate dehydratase
1279	 47.56	+1	1619431..1620168	-	245	73668839	-	Mbar_A1311	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1280	 45.06	0	1620283..1621152	-	289	73668840	hisG	Mbar_A1312	-	ATP phosphoribosyltransferase
1281	 46.45	0	1621639..1622835	+	398	73668841	-	Mbar_A1313	-	S-adenosylmethionine synthetase
1282	 39.21	0	1624356..1624985	+	209	73668842	-	Mbar_A1314	-	hypothetical protein
1283	 46.24	0	1625024..1626193	+	389	73668843	-	Mbar_A1315	-	Xaa-Pro dipeptidase (cobalt-dependent)
1284	 48.26	+1	1626542..1627432	+	296	73668844	-	Mbar_A1316	-	methionine aminopeptidase
1285	 40.00	0	1627750..1628574	+	274	73668845	-	Mbar_A1317	-	hypothetical protein
1286	 48.26	+1	1628591..1628878	+	95	73668846	-	Mbar_A1318	-	hypothetical protein
1287	 31.86	-2	1629196..1629399	+	67	73668847	-	Mbar_A1319	-	O-antigen related protein
1288	 38.10	0	1629484..1629588	+	34	73668848	-	Mbar_A1320	-	hypothetical protein
1289	 30.75	-2	1630758..1631801	-	347	73668849	-	Mbar_A1321	-	hypothetical protein
1290	 31.74	-2	1634530..1635405	-	291	73668850	-	Mbar_A1323	-	hypothetical protein
1291	 34.65	-1	1635424..1635651	-	75	73668851	-	Mbar_A1324	-	hypothetical protein
1292	 38.33	0	1635687..1636106	-	139	73668852	-	Mbar_A1325	-	hypothetical protein
1293	 36.39	-1	1636905..1637918	+	337	73668853	-	Mbar_A1326	-	hypothetical protein
1294	 39.13	0	1638034..1639050	-	338	73668854	-	Mbar_A1327	-	hypothetical protein
1295	 34.65	-1	1639524..1639751	-	75	73668855	-	Mbar_A1328	-	hypothetical protein
1296	 37.62	0	1639787..1640206	-	139	73668856	-	Mbar_A1329	-	hypothetical protein
1297	 46.44	0	1640499..1641566	+	355	73668857	-	Mbar_A1330	-	N2-methylguanosine tRNA methyltransferase
1298	 36.19	-1	1641810..1643069	+	419	73668858	-	Mbar_A1331	-	hypothetical protein
1299	 46.17	0	1643474..1644283	-	269	73668859	truA	Mbar_A1332	-	tRNA pseudouridine synthase A
1300	 44.99	0	1644292..1645209	-	305	73668860	-	Mbar_A1333	-	ArsR family transcriptional regulator
1301	 45.38	0	1645399..1646469	+	356	73668861	purP	Mbar_A1334	-	5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase
1302	 35.44	-1	1646712..1647803	-	363	73668862	-	Mbar_A1335	-	hypothetical protein
1303	 37.67	0	1647855..1648223	-	122	73668863	-	Mbar_A1336	-	hypothetical protein
1304	 46.11	0	1648491..1649828	+	445	73668864	-	Mbar_A1337	-	hypothetical protein
1305	 46.83	+1	1650017..1650505	+	162	73668865	leuD	Mbar_A1338	-	3-isopropylmalate dehydratase small subunit
1306	 47.25	+1	1650601..1651728	+	375	73668866	-	Mbar_A1339	-	3-isopropylmalate dehydrogenase
1307	 37.25	0	1653694..1654305	-	203	73668867	-	Mbar_A1341	-	dipeptide ABC transporter, ATP-binding protein
1308	 41.13	0	1654295..1655218	-	307	73668868	-	Mbar_A1342	-	dipeptide ABC transporter, ATP-binding protein
1309	 42.42	0	1655681..1656538	-	285	73668869	-	Mbar_A1343	-	dipeptide ABC transporter, permease protein
1310	 41.89	0	1656535..1657527	-	330	73668870	-	Mbar_A1344	-	dipeptide ABC transporter, permease protein
1311	 44.91	0	1657967..1659625	-	552	73668871	-	Mbar_A1345	-	dipeptide ABC transporter, solute-binding protein
1312	 39.32	0	1662066..1662884	-	272	73668872	-	Mbar_A1346	-	transposase
1313	 41.55	0	1663148..1663561	+	137	73668873	-	Mbar_A1347	-	hypothetical protein
1314	 41.93	0	1663707..1664276	+	189	73668874	-	Mbar_A1348	-	hypothetical protein
1315	 32.34	-1	1664561..1664761	+	66	73668875	-	Mbar_A1349	-	hypothetical protein
1316	 42.68	0	1664962..1665528	+	188	73668876	-	Mbar_A1350	-	hypothetical protein
1317	 38.83	0	1665910..1666437	+	175	73668877	-	Mbar_A1351	-	hypothetical protein
1318	 37.48	0	1666575..1667273	+	232	73668878	-	Mbar_A1352	-	hypothetical protein
1319	 34.79	-1	1667328..1668428	+	366	73668879	-	Mbar_A1353	-	hypothetical protein
1320	 33.52	-1	1668609..1669703	+	364	73668880	-	Mbar_A1354	-	hypothetical protein
1321	 33.87	-1	1669693..1672479	+	928	73668881	-	Mbar_A1355	-	hypothetical protein
1322	 37.99	0	1672480..1673445	+	321	73668882	-	Mbar_A1356	-	hypothetical protein
1323	 33.59	-1	1673435..1673827	+	130	73668883	-	Mbar_A1357	-	hypothetical protein
1324	 34.55	-1	1673829..1674653	+	274	73668884	-	Mbar_A1358	-	hypothetical protein
1325	 45.13	0	1675249..1675731	+	160	73668885	-	Mbar_A1359	-	hypothetical protein
1326	 47.70	+1	1675950..1677077	+	375	73668886	-	Mbar_A1360	-	hypothetical protein
41.74	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.