IslandPathversion 1.0

IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.74 STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1197	 39.72	0	1513225..1514148	+	307	73668757	ubiA	Mbar_A1225	-	prenyltransferase
1198	 39.51	0	1517340..1517663	-	107	73668758	-	Mbar_A1227	-	hypothetical protein
1199	 36.29	-1	1518384..1518890	-	168	73668759	-	Mbar_A1228	-	hypothetical protein
1200	 37.84	0	1519674..1520672	-	332	73668760	-	Mbar_A1229	-	hypothetical protein
1201	 40.75	0	1521202..1522590	+	462	73668761	-	Mbar_A1230	-	transposase
1202	 42.49	0	1522708..1524477	-	589	73668762	-	Mbar_A1231	-	alkaline phosphatase
1203	 39.84	0	1525301..1526437	+	378	73668763	-	Mbar_A1232	-	glycosyltransferase
1204	 44.01	0	1527301..1527993	+	230	73668764	-	Mbar_A1233	-	3,5-cyclic-nucleotide phosphodiesterase
1205	 37.24	0	1528691..1529638	+	315	73668765	-	Mbar_A1234	-	hypothetical protein
1206	 42.17	0	1530523..1531269	+	248	73668766	-	Mbar_A1235	-	hypothetical protein
1207	 41.49	0	1531362..1533200	-	612	73668767	-	Mbar_A1236	-	hypothetical protein
1208	 43.98	0	1533390..1534910	-	506	73668768	-	Mbar_A1237	-	putative regulatory protein
1209	 43.41	0	1535391..1536134	+	247	73668769	-	Mbar_A1238	-	4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate synthesis protein ThiF
1210	 40.76	0	1536268..1537236	+	322	73668770	-	Mbar_A1239	-	hypothetical protein
1211	 41.09	0	1537631..1538107	-	158	73668771	-	Mbar_A1240	-	2-cys peroxiredoxin, subunit A
1212	 39.01	0	1540798..1543230	-	810	73668772	-	Mbar_A1242	-	hypothetical protein
1213	 39.44	0	1543911..1546007	-	698	73668773	-	Mbar_A1243	-	hypothetical protein
1214	 43.17	0	1546247..1547791	-	514	73668774	-	Mbar_A1244	-	hypothetical protein
1215	 34.45	-1	1549071..1549784	+	237	73668775	-	Mbar_A1245	-	hypothetical protein
1216	 31.53	-2	1552086..1552640	+	184	73668776	-	Mbar_A1247	-	hypothetical protein
1217	 34.00	-1	1552932..1553381	+	149	73668777	-	Mbar_A1248	-	hypothetical protein
1218	 48.77	+1	1553576..1554145	+	189	73668778	-	Mbar_A1249	-	L-fuculose phosphate aldolase
1219	 44.77	0	1554476..1555087	+	203	73668779	-	Mbar_A1250	-	CDP-alcohol phosphatidyltransferase
1220	 40.59	0	1555650..1556090	+	146	73668780	-	Mbar_A1251	-	archease family protein
1221	 47.64	+1	1556509..1558011	+	500	73668781	-	Mbar_A1252	-	hypothetical protein
1222	 37.92	0	1558406..1559518	-	370	73668782	-	Mbar_A1253	-	hypothetical protein
1223	 49.00	+1	1561547..1562497	-	316	73668783	-	Mbar_A1255	-	tetrahydromethanopterin S-methyltransferase subunit H
1224	 39.27	0	1562511..1562729	-	72	73668784	-	Mbar_A1256	-	tetrahydromethanopterin S-methyltransferase subunit G
1225	 47.30	+1	1562743..1562964	-	73	73668785	mtrF	Mbar_A1257	-	tetrahydromethanopterin S-methyltransferase subunit F
1226	 47.99	+1	1562964..1563686	-	240	73668786	-	Mbar_A1258	-	tetrahydromethanopterin S-methyltransferase subunit A
1227	 46.18	0	1563688..1564014	-	108	73668787	-	Mbar_A1259	-	tetrahydromethanopterin S-methyltransferase subunit B
1228	 47.51	+1	1564011..1564814	-	267	73668788	-	Mbar_A1260	-	tetrahydromethanopterin S-methyltransferase subunit C
1229	 47.68	+1	1564816..1565568	-	250	73668789	-	Mbar_A1261	-	tetrahydromethanopterin S-methyltransferase subunit D
1230	 45.43	0	1565565..1566473	-	302	73668790	-	Mbar_A1262	-	tetrahydromethanopterin S-methyltransferase subunit E
1231	 43.33	0	1567284..1568093	+	269	73668791	-	Mbar_A1263	-	hypothetical protein
1232	 44.22	0	1568166..1570085	-	639	73668792	-	Mbar_A1264	-	sodium:proline symporter (proline permease)
1233	 42.35	0	1571283..1571870	+	195	73668793	-	Mbar_A1265	-	putative molybdenum transport protein ModA
1234	 31.08	-2	1572434..1573498	+	354	73668794	-	Mbar_A1266	-	transposase, putative
1235	 42.12	0	1573832..1574890	-	352	73668795	-	Mbar_A1267	-	hypothetical protein
1236	 38.58	0	1574883..1576025	-	380	73668796	-	Mbar_A1268	-	hypothetical protein
1237	 43.12	0	1576022..1578268	-	748	73668797	-	Mbar_A1269	-	RND superfamily protein
1238	 37.29	0	1578726..1579508	+	260	73668798	-	Mbar_A1270	-	transcriptional regulator
1239	 45.10	0	1579730..1580392	+	220	73668799	-	Mbar_A1271	-	hypothetical protein
1240	 41.36	0	1580455..1580778	+	107	73668800	-	Mbar_A1272	-	putative ribonuclease P subunit RPR2
1241	 46.47	0	1580945..1581256	-	103	73668801	-	Mbar_A1273	-	signal recognition particle protein Srp19
1242	 41.09	0	1581413..1581670	+	85	73668802	-	Mbar_A1274	-	hypothetical protein
1243	 40.97	0	1581883..1582746	+	287	73668803	-	Mbar_A1275	-	hypothetical protein
1244	 39.19	0	1582779..1583546	+	255	73668804	-	Mbar_A1276	-	hypothetical protein
1245	 29.88	-2	1584166..1584570	+	134	73668805	-	Mbar_A1277	-	hypothetical protein
1246	 40.00	0	1585385..1585624	-	79	73668806	-	Mbar_A1278	-	hypothetical protein
1247	 44.62	0	1586067..1586828	-	253	73668807	-	Mbar_A1279	-	UbiE/COQ5 methyltransferase
1248	 46.75	+1	1586825..1587532	-	235	73668808	-	Mbar_A1280	-	oligopeptide ABC transporter, ATP-binding protein
1249	 45.75	0	1587508..1588449	-	313	73668809	-	Mbar_A1281	-	oligopeptide ABC transporter, ATP-binding protein
1250	 46.18	0	1588446..1589348	-	300	73668810	-	Mbar_A1282	-	oligopeptide ABC transporter, permease protein
1251	 45.65	0	1589353..1590294	-	313	73668811	-	Mbar_A1283	-	oligopeptide ABC transporter, permease protein
1252	 43.77	0	1590414..1592051	-	545	73668812	-	Mbar_A1284	-	oligopeptide ABC transporter, solute-binding protein
1253	 46.01	0	1592080..1592868	-	262	73668813	-	Mbar_A1285	-	hypothetical protein
1254	 42.95	0	1593420..1594532	+	370	73668814	-	Mbar_A1286	-	ABC transporter, solute-binding protein
1255	 44.78	0	1595272..1595874	+	200	73668815	-	Mbar_A1287	-	formylmethanofuran dehydrogenase, subunit E
1256	 47.74	+1	1595893..1596933	+	346	73668816	-	Mbar_A1288	-	formylmethanofuran dehydrogenase, subunit F
1257	 45.81	0	1596934..1598688	+	584	73668817	-	Mbar_A1289	-	formylmethanofuran dehydrogenase, subunit A
1258	 47.90	+1	1598693..1599598	+	301	73668818	-	Mbar_A1290	-	formylmethanofuran dehydrogenase, subunit C
1259	 44.36	0	1599609..1599998	+	129	73668819	-	Mbar_A1291	-	formylmethanofuran dehydrogenase, subunit D
1260	 48.16	+1	1600001..1601302	+	433	73668820	-	Mbar_A1292	-	formylmethanofuran dehydrogenase, subunit B
1261	 42.59	0	1601704..1602459	+	251	73668821	-	Mbar_A1293	-	outer membrane protein
1262	 43.58	0	1602974..1604086	-	370	73668822	-	Mbar_A1294	-	phosphoserine aminotransferase
1263	 37.24	0	1604676..1605290	+	204	73668823	-	Mbar_A1295	-	phosphoribosylglycinamide formyltransferase
1264	 38.55	0	1605712..1606458	-	248	73668824	-	Mbar_A1296	-	hypothetical protein
1265	 43.10	0	1606924..1607394	-	156	73668825	-	Mbar_A1297	-	hypothetical protein
1266	 39.34	0	1607902..1608417	-	171	73668826	-	Mbar_A1298	-	hypothetical protein
1267	 36.93	-1	1609109..1609414	-	101	73668827	-	Mbar_A1299	-	hypothetical protein
1268	 37.13	0	1609779..1610780	+	333	73668828	-	Mbar_A1300	-	hypothetical protein
1269	 29.52	-2	1611196..1611588	-	130	73668829	-	Mbar_A1301	-	hypothetical protein
1270	 31.50	-2	1611934..1612206	+	90	73668830	-	Mbar_A1302	-	hypothetical protein
1271	 43.67	0	1612744..1613652	-	302	73668831	-	Mbar_A1303	-	hypothetical protein
1272	 45.58	0	1613684..1614475	-	263	73668832	-	Mbar_A1304	-	nicotinate-nucleotide pyrophosphorylase (carboxylating)
1273	 45.48	0	1614723..1615784	-	353	73668833	-	Mbar_A1305	-	molybdate ABC transporter, ATP-binding protein
1274	 44.61	0	1615781..1616587	-	268	73668834	-	Mbar_A1306	-	molybdate ABC transporter, permease protein
1275	 43.59	0	1616575..1617393	-	272	73668835	-	Mbar_A1307	-	molybdate-binding protein
1276	 41.90	0	1617557..1618198	-	213	73668836	-	Mbar_A1308	-	putative NAD(P)H oxidoreductase(quinone)
1277	 37.97	0	1618456..1618692	-	78	73668837	-	Mbar_A1309	-	hypothetical protein
1278	 47.40	+1	1618715..1619290	-	191	73668838	hisB	Mbar_A1310	-	imidazoleglycerol-phosphate dehydratase
1279	 47.56	+1	1619431..1620168	-	245	73668839	-	Mbar_A1311	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1280	 45.06	0	1620283..1621152	-	289	73668840	hisG	Mbar_A1312	-	ATP phosphoribosyltransferase
1281	 46.45	0	1621639..1622835	+	398	73668841	-	Mbar_A1313	-	S-adenosylmethionine synthetase
1282	 39.21	0	1624356..1624985	+	209	73668842	-	Mbar_A1314	-	hypothetical protein
1283	 46.24	0	1625024..1626193	+	389	73668843	-	Mbar_A1315	-	Xaa-Pro dipeptidase (cobalt-dependent)
1284	 48.26	+1	1626542..1627432	+	296	73668844	-	Mbar_A1316	-	methionine aminopeptidase
1285	 40.00	0	1627750..1628574	+	274	73668845	-	Mbar_A1317	-	hypothetical protein
1286	 48.26	+1	1628591..1628878	+	95	73668846	-	Mbar_A1318	-	hypothetical protein
1287	 31.86	-2	1629196..1629399	+	67	73668847	-	Mbar_A1319	-	O-antigen related protein
1288	 38.10	0	1629484..1629588	+	34	73668848	-	Mbar_A1320	-	hypothetical protein
1289	 30.75	-2	1630758..1631801	-	347	73668849	-	Mbar_A1321	-	hypothetical protein
1290	 31.74	-2	1634530..1635405	-	291	73668850	-	Mbar_A1323	-	hypothetical protein
1291	 34.65	-1	1635424..1635651	-	75	73668851	-	Mbar_A1324	-	hypothetical protein
1292	 38.33	0	1635687..1636106	-	139	73668852	-	Mbar_A1325	-	hypothetical protein
1293	 36.39	-1	1636905..1637918	+	337	73668853	-	Mbar_A1326	-	hypothetical protein
1294	 39.13	0	1638034..1639050	-	338	73668854	-	Mbar_A1327	-	hypothetical protein
1295	 34.65	-1	1639524..1639751	-	75	73668855	-	Mbar_A1328	-	hypothetical protein
1296	 37.62	0	1639787..1640206	-	139	73668856	-	Mbar_A1329	-	hypothetical protein
41.74	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.