IslandPathversion 1.0

IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.74 STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1159	 35.48	-1	1457593..1458057	-	154	73668719	-	Mbar_A1186	-	glyoxalase
1160	 46.36	0	1458571..1459890	-	439	73668720	-	Mbar_A1187	-	cobyrinate a,c-diamide synthase / hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing)
1161	 39.78	0	1460325..1462232	+	635	73668721	-	Mbar_A1188	-	hypothetical protein
1162	 37.82	0	1462570..1463037	+	155	73668722	-	Mbar_A1189	-	transposase
1163	 43.84	0	1464024..1465022	+	332	73668723	moaA	Mbar_A1190	-	molybdenum cofactor biosynthesis protein A
1164	 30.91	-2	1465072..1465236	+	54	73668724	-	Mbar_A1191	-	hypothetical protein
1165	 46.64	+1	1465449..1466252	-	267	73668725	surE	Mbar_A1192	-	stationary phase survival protein SurE
1166	 40.26	0	1469229..1469531	-	100	73668726	-	Mbar_A1194	-	hypothetical protein
1167	 45.13	0	1470417..1472603	+	728	73668727	-	Mbar_A1195	-	polyphosphate kinase
1168	 37.84	0	1472776..1473174	-	132	73668728	-	Mbar_A1196	-	hypothetical protein
1169	 39.56	0	1474018..1475913	-	631	73668729	-	Mbar_A1197	-	hypothetical protein
1170	 44.97	0	1476513..1478162	+	549	73668730	-	Mbar_A1198	-	Ppx/GppA phosphatase
1171	 41.08	0	1478416..1481178	-	920	73668731	-	Mbar_A1199	-	hypothetical protein
1172	 43.49	0	1482171..1483292	+	373	73668732	cdc6	Mbar_A1200	-	cell division control protein 6
1173	 47.66	+1	1483554..1485221	-	555	73668733	-	Mbar_A1201	-	Hsp60
1174	 41.06	0	1486379..1487401	+	340	73668734	-	Mbar_A1202	-	beta-lactamase class C and other pencillin-binding proteins
1175	 44.49	0	1487708..1488451	-	247	73668735	-	Mbar_A1203	-	hypothetical protein
1176	 45.25	0	1488496..1490115	-	539	73668736	-	Mbar_A1204	-	O-phosphoseryl-tRNA synthetase
1177	 44.34	0	1490579..1491205	-	208	73668737	-	Mbar_A1205	-	translin family protein
1178	 38.10	0	1492156..1492428	-	90	73668738	-	Mbar_A1206	-	hypothetical protein
1179	 44.93	0	1492707..1493387	+	226	73668739	-	Mbar_A1207	-	hypothetical protein
1180	 42.31	0	1493557..1496373	-	938	73668740	-	Mbar_A1208	-	Hef nuclease
1181	 49.12	+1	1496659..1498482	-	607	73668741	-	Mbar_A1209	-	glycyl-tRNA synthetase
1182	 30.04	-2	1498720..1500087	-	455	73668742	-	Mbar_A1210	-	hypothetical protein
1183	 37.86	0	1500560..1500868	-	102	73668743	-	Mbar_A1211	-	hypothetical protein
1184	 44.94	0	1501395..1502411	+	338	73668744	-	Mbar_A1212	-	flap endonuclease-1
1185	 45.07	0	1502566..1502940	+	124	73668745	-	Mbar_A1213	-	hypothetical protein
1186	 46.23	0	1503318..1503635	+	105	73668746	-	Mbar_A1214	-	hypothetical protein
1187	 41.11	0	1503655..1503834	+	59	73668747	-	Mbar_A1215	-	hypothetical protein
1188	 48.42	+1	1504316..1505011	+	231	73668748	-	Mbar_A1216	-	cobalt transport protein CbiM
1189	 46.23	0	1505012..1505329	+	105	73668749	-	Mbar_A1217	-	cobalt transport protein CbiN
1190	 45.72	0	1505360..1506142	+	260	73668750	-	Mbar_A1218	-	cobalt ABC transporter, permease protein
1191	 47.78	+1	1506173..1507543	+	456	73668751	-	Mbar_A1219	-	cobalt ABC transporter, ATP-binding protein
1192	 50.31	+1	1507461..1508591	+	376	73668752	-	Mbar_A1220	-	cation efflux family protein
1193	 47.66	+1	1508651..1508992	+	113	73668753	-	Mbar_A1221	-	hypothetical protein
1194	 47.13	+1	1509018..1509974	-	318	73668754	-	Mbar_A1222	-	beta-ribofuranosylaminobenzene 5'-phosphate synthase
1195	 45.05	0	1510259..1511812	-	517	73668755	-	Mbar_A1223	-	phosphoglyceromutase
1196	 43.62	0	1512050..1512652	+	200	73668756	-	Mbar_A1224	-	transcriptional regulator
1197	 39.72	0	1513225..1514148	+	307	73668757	ubiA	Mbar_A1225	-	prenyltransferase
1198	 39.51	0	1517340..1517663	-	107	73668758	-	Mbar_A1227	-	hypothetical protein
1199	 36.29	-1	1518384..1518890	-	168	73668759	-	Mbar_A1228	-	hypothetical protein
1200	 37.84	0	1519674..1520672	-	332	73668760	-	Mbar_A1229	-	hypothetical protein
1201	 40.75	0	1521202..1522590	+	462	73668761	-	Mbar_A1230	-	transposase
1202	 42.49	0	1522708..1524477	-	589	73668762	-	Mbar_A1231	-	alkaline phosphatase
1203	 39.84	0	1525301..1526437	+	378	73668763	-	Mbar_A1232	-	glycosyltransferase
1204	 44.01	0	1527301..1527993	+	230	73668764	-	Mbar_A1233	-	3,5-cyclic-nucleotide phosphodiesterase
1205	 37.24	0	1528691..1529638	+	315	73668765	-	Mbar_A1234	-	hypothetical protein
1206	 42.17	0	1530523..1531269	+	248	73668766	-	Mbar_A1235	-	hypothetical protein
1207	 41.49	0	1531362..1533200	-	612	73668767	-	Mbar_A1236	-	hypothetical protein
1208	 43.98	0	1533390..1534910	-	506	73668768	-	Mbar_A1237	-	putative regulatory protein
1209	 43.41	0	1535391..1536134	+	247	73668769	-	Mbar_A1238	-	4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate synthesis protein ThiF
1210	 40.76	0	1536268..1537236	+	322	73668770	-	Mbar_A1239	-	hypothetical protein
1211	 41.09	0	1537631..1538107	-	158	73668771	-	Mbar_A1240	-	2-cys peroxiredoxin, subunit A
1212	 39.01	0	1540798..1543230	-	810	73668772	-	Mbar_A1242	-	hypothetical protein
1213	 39.44	0	1543911..1546007	-	698	73668773	-	Mbar_A1243	-	hypothetical protein
1214	 43.17	0	1546247..1547791	-	514	73668774	-	Mbar_A1244	-	hypothetical protein
1215	 34.45	-1	1549071..1549784	+	237	73668775	-	Mbar_A1245	-	hypothetical protein
1216	 31.53	-2	1552086..1552640	+	184	73668776	-	Mbar_A1247	-	hypothetical protein
1217	 34.00	-1	1552932..1553381	+	149	73668777	-	Mbar_A1248	-	hypothetical protein
1218	 48.77	+1	1553576..1554145	+	189	73668778	-	Mbar_A1249	-	L-fuculose phosphate aldolase
1219	 44.77	0	1554476..1555087	+	203	73668779	-	Mbar_A1250	-	CDP-alcohol phosphatidyltransferase
1220	 40.59	0	1555650..1556090	+	146	73668780	-	Mbar_A1251	-	archease family protein
1221	 47.64	+1	1556509..1558011	+	500	73668781	-	Mbar_A1252	-	hypothetical protein
1222	 37.92	0	1558406..1559518	-	370	73668782	-	Mbar_A1253	-	hypothetical protein
1223	 49.00	+1	1561547..1562497	-	316	73668783	-	Mbar_A1255	-	tetrahydromethanopterin S-methyltransferase subunit H
1224	 39.27	0	1562511..1562729	-	72	73668784	-	Mbar_A1256	-	tetrahydromethanopterin S-methyltransferase subunit G
1225	 47.30	+1	1562743..1562964	-	73	73668785	mtrF	Mbar_A1257	-	tetrahydromethanopterin S-methyltransferase subunit F
1226	 47.99	+1	1562964..1563686	-	240	73668786	-	Mbar_A1258	-	tetrahydromethanopterin S-methyltransferase subunit A
1227	 46.18	0	1563688..1564014	-	108	73668787	-	Mbar_A1259	-	tetrahydromethanopterin S-methyltransferase subunit B
1228	 47.51	+1	1564011..1564814	-	267	73668788	-	Mbar_A1260	-	tetrahydromethanopterin S-methyltransferase subunit C
1229	 47.68	+1	1564816..1565568	-	250	73668789	-	Mbar_A1261	-	tetrahydromethanopterin S-methyltransferase subunit D
1230	 45.43	0	1565565..1566473	-	302	73668790	-	Mbar_A1262	-	tetrahydromethanopterin S-methyltransferase subunit E
1231	 43.33	0	1567284..1568093	+	269	73668791	-	Mbar_A1263	-	hypothetical protein
1232	 44.22	0	1568166..1570085	-	639	73668792	-	Mbar_A1264	-	sodium:proline symporter (proline permease)
1233	 42.35	0	1571283..1571870	+	195	73668793	-	Mbar_A1265	-	putative molybdenum transport protein ModA
1234	 31.08	-2	1572434..1573498	+	354	73668794	-	Mbar_A1266	-	transposase, putative
1235	 42.12	0	1573832..1574890	-	352	73668795	-	Mbar_A1267	-	hypothetical protein
1236	 38.58	0	1574883..1576025	-	380	73668796	-	Mbar_A1268	-	hypothetical protein
1237	 43.12	0	1576022..1578268	-	748	73668797	-	Mbar_A1269	-	RND superfamily protein
1238	 37.29	0	1578726..1579508	+	260	73668798	-	Mbar_A1270	-	transcriptional regulator
1239	 45.10	0	1579730..1580392	+	220	73668799	-	Mbar_A1271	-	hypothetical protein
1240	 41.36	0	1580455..1580778	+	107	73668800	-	Mbar_A1272	-	putative ribonuclease P subunit RPR2
1241	 46.47	0	1580945..1581256	-	103	73668801	-	Mbar_A1273	-	signal recognition particle protein Srp19
1242	 41.09	0	1581413..1581670	+	85	73668802	-	Mbar_A1274	-	hypothetical protein
1243	 40.97	0	1581883..1582746	+	287	73668803	-	Mbar_A1275	-	hypothetical protein
1244	 39.19	0	1582779..1583546	+	255	73668804	-	Mbar_A1276	-	hypothetical protein
1245	 29.88	-2	1584166..1584570	+	134	73668805	-	Mbar_A1277	-	hypothetical protein
1246	 40.00	0	1585385..1585624	-	79	73668806	-	Mbar_A1278	-	hypothetical protein
1247	 44.62	0	1586067..1586828	-	253	73668807	-	Mbar_A1279	-	UbiE/COQ5 methyltransferase
1248	 46.75	+1	1586825..1587532	-	235	73668808	-	Mbar_A1280	-	oligopeptide ABC transporter, ATP-binding protein
1249	 45.75	0	1587508..1588449	-	313	73668809	-	Mbar_A1281	-	oligopeptide ABC transporter, ATP-binding protein
1250	 46.18	0	1588446..1589348	-	300	73668810	-	Mbar_A1282	-	oligopeptide ABC transporter, permease protein
1251	 45.65	0	1589353..1590294	-	313	73668811	-	Mbar_A1283	-	oligopeptide ABC transporter, permease protein
1252	 43.77	0	1590414..1592051	-	545	73668812	-	Mbar_A1284	-	oligopeptide ABC transporter, solute-binding protein
1253	 46.01	0	1592080..1592868	-	262	73668813	-	Mbar_A1285	-	hypothetical protein
1254	 42.95	0	1593420..1594532	+	370	73668814	-	Mbar_A1286	-	ABC transporter, solute-binding protein
1255	 44.78	0	1595272..1595874	+	200	73668815	-	Mbar_A1287	-	formylmethanofuran dehydrogenase, subunit E
1256	 47.74	+1	1595893..1596933	+	346	73668816	-	Mbar_A1288	-	formylmethanofuran dehydrogenase, subunit F
1257	 45.81	0	1596934..1598688	+	584	73668817	-	Mbar_A1289	-	formylmethanofuran dehydrogenase, subunit A
1258	 47.90	+1	1598693..1599598	+	301	73668818	-	Mbar_A1290	-	formylmethanofuran dehydrogenase, subunit C
41.74	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.