IslandPathversion 1.0

IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.74 STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1112	 43.70	0	1408351..1409778	+	475	73668672	-	Mbar_A1139	-	NDP-N-acetyl-D-galactosaminuronic acid dehydrogenase
1113	 37.44	0	1409836..1410882	+	348	73668673	-	Mbar_A1140	-	hypothetical protein
1114	 41.38	0	1411454..1412944	+	496	73668674	-	Mbar_A1141	-	O-antigen translocase
1115	 39.75	0	1413058..1414023	-	321	73668675	-	Mbar_A1142	-	dolichyl-phosphate mannose synthase related protein
1116	 41.28	0	1414879..1415784	+	301	73668676	-	Mbar_A1143	-	hypothetical protein
1117	 43.81	0	1416320..1417216	-	298	73668677	-	Mbar_A1144	-	dTDP-glucose 4,6-dehydratase
1118	 42.29	0	1417690..1418571	+	293	73668678	-	Mbar_A1145	-	hypothetical protein
1119	 37.79	0	1418574..1419449	+	291	73668679	-	Mbar_A1146	-	CAAX amino terminal protease family protein
1120	 40.65	0	1419829..1420593	+	254	73668680	-	Mbar_A1147	-	hypothetical protein
1121	 38.00	0	1420887..1421186	+	99	73668681	-	Mbar_A1148	-	hypothetical protein
1122	 36.41	-1	1421813..1422007	+	64	73668682	rps17E	Mbar_A1149	-	30S ribosomal protein S17e
1123	 44.29	0	1422048..1422923	+	291	73668683	dapA	Mbar_A1150	-	dihydrodipicolinate synthase
1124	 47.47	+1	1422920..1423711	+	263	73668684	-	Mbar_A1151	-	dihydrodipicolinate reductase
1125	 38.69	0	1424269..1424679	-	136	73668685	-	Mbar_A1152	-	hypothetical protein
1126	 44.67	0	1424930..1425379	+	149	73668686	-	Mbar_A1153	-	hypothetical protein
1127	 39.00	0	1425420..1426001	+	193	73668687	-	Mbar_A1154	-	hypothetical protein
1128	 37.22	0	1425998..1426717	+	239	73668688	-	Mbar_A1155	-	hypothetical protein
1129	 34.95	-1	1426731..1427348	+	205	73668689	-	Mbar_A1156	-	hypothetical protein
1130	 37.54	0	1427378..1427947	+	189	73668690	-	Mbar_A1157	-	hypothetical protein
1131	 36.78	-1	1427944..1428552	+	202	73668691	-	Mbar_A1158	-	hypothetical protein
1132	 38.28	0	1428553..1429179	+	208	73668692	-	Mbar_A1159	-	hypothetical protein
1133	 37.33	0	1429176..1429775	+	199	73668693	-	Mbar_A1160	-	hypothetical protein
1134	 39.11	0	1429772..1430377	+	201	73668694	-	Mbar_A1161	-	hypothetical protein
1135	 38.41	0	1430378..1431007	+	209	73668695	-	Mbar_A1162	-	hypothetical protein
1136	 36.00	-1	1431004..1431603	+	199	73668696	-	Mbar_A1163	-	hypothetical protein
1137	 38.94	0	1431604..1432245	+	213	73668697	-	Mbar_A1164	-	hypothetical protein
1138	 36.13	-1	1432407..1433156	+	249	73668698	-	Mbar_A1165	-	hypothetical protein
1139	 42.19	0	1433192..1433665	-	157	73668699	-	Mbar_A1166	-	hypothetical protein
1140	 40.13	0	1433857..1434327	-	156	73668700	-	Mbar_A1167	-	aspartate carbamoyltransferase regulatory subunit
1141	 44.23	0	1434324..1435250	-	308	73668701	pyrB	Mbar_A1168	-	aspartate carbamoyltransferase catalytic subunit
1142	 38.36	0	1435353..1435829	-	158	73668702	-	Mbar_A1169	-	hypothetical protein
1143	 46.94	+1	1436305..1437546	+	413	73668703	-	Mbar_A1170	-	bifunctional hexulose-6-phosphate synthase/ribonuclease regulator
1144	 44.10	0	1437694..1440339	-	881	73668704	-	Mbar_A1171	-	ATP-dependent DNA helicase RecQ
1145	 47.31	+1	1441390..1442169	-	259	73668705	-	Mbar_A1172	-	iron ABC transporter, ATP-binding protein
1146	 46.13	0	1442174..1443244	-	356	73668706	-	Mbar_A1173	-	iron ABC transporter, permease protein
1147	 44.95	0	1443254..1444570	-	438	73668707	-	Mbar_A1174	-	iron ABC transporter, solute-binding protein
1148	 42.87	0	1444737..1446152	+	471	73668708	-	Mbar_A1175	-	hypothetical protein
1149	 43.19	0	1446512..1447738	+	408	73668709	-	Mbar_A1176	-	ABC transporter, solute-binding protein
1150	 44.36	0	1447812..1448636	+	274	73668710	-	Mbar_A1177	-	ribosomal RNA adenine dimethylase
1151	 47.93	+1	1449141..1450058	+	305	73668711	-	Mbar_A1178	-	GMP synthase subunit B
1152	 46.40	0	1450236..1451276	+	346	73668712	-	Mbar_A1179	-	hypothetical protein
1153	 43.39	0	1451311..1451817	-	168	73668713	-	Mbar_A1180	-	acetyltransferase (GNAT) family protein
1154	 42.11	0	1451893..1452861	-	322	73668714	-	Mbar_A1181	-	acetylglutamate kinase
1155	 45.96	0	1453102..1453386	-	94	73668715	-	Mbar_A1182	-	nucleoid protein MC1
1156	 43.54	0	1453788..1454747	+	319	73668716	-	Mbar_A1183	-	GTP cyclohydrolase
1157	 44.34	0	1455051..1455377	+	108	73668717	-	Mbar_A1184	-	hypothetical protein
1158	 44.42	0	1455510..1456943	-	477	73668718	-	Mbar_A1185	-	hypothetical protein
1159	 35.48	-1	1457593..1458057	-	154	73668719	-	Mbar_A1186	-	glyoxalase
1160	 46.36	0	1458571..1459890	-	439	73668720	-	Mbar_A1187	-	cobyrinate a,c-diamide synthase / hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing)
1161	 39.78	0	1460325..1462232	+	635	73668721	-	Mbar_A1188	-	hypothetical protein
1162	 37.82	0	1462570..1463037	+	155	73668722	-	Mbar_A1189	-	transposase
1163	 43.84	0	1464024..1465022	+	332	73668723	moaA	Mbar_A1190	-	molybdenum cofactor biosynthesis protein A
1164	 30.91	-2	1465072..1465236	+	54	73668724	-	Mbar_A1191	-	hypothetical protein
1165	 46.64	+1	1465449..1466252	-	267	73668725	surE	Mbar_A1192	-	stationary phase survival protein SurE
1166	 40.26	0	1469229..1469531	-	100	73668726	-	Mbar_A1194	-	hypothetical protein
1167	 45.13	0	1470417..1472603	+	728	73668727	-	Mbar_A1195	-	polyphosphate kinase
1168	 37.84	0	1472776..1473174	-	132	73668728	-	Mbar_A1196	-	hypothetical protein
1169	 39.56	0	1474018..1475913	-	631	73668729	-	Mbar_A1197	-	hypothetical protein
1170	 44.97	0	1476513..1478162	+	549	73668730	-	Mbar_A1198	-	Ppx/GppA phosphatase
1171	 41.08	0	1478416..1481178	-	920	73668731	-	Mbar_A1199	-	hypothetical protein
1172	 43.49	0	1482171..1483292	+	373	73668732	cdc6	Mbar_A1200	-	cell division control protein 6
1173	 47.66	+1	1483554..1485221	-	555	73668733	-	Mbar_A1201	-	Hsp60
1174	 41.06	0	1486379..1487401	+	340	73668734	-	Mbar_A1202	-	beta-lactamase class C and other pencillin-binding proteins
1175	 44.49	0	1487708..1488451	-	247	73668735	-	Mbar_A1203	-	hypothetical protein
1176	 45.25	0	1488496..1490115	-	539	73668736	-	Mbar_A1204	-	O-phosphoseryl-tRNA synthetase
1177	 44.34	0	1490579..1491205	-	208	73668737	-	Mbar_A1205	-	translin family protein
1178	 38.10	0	1492156..1492428	-	90	73668738	-	Mbar_A1206	-	hypothetical protein
1179	 44.93	0	1492707..1493387	+	226	73668739	-	Mbar_A1207	-	hypothetical protein
1180	 42.31	0	1493557..1496373	-	938	73668740	-	Mbar_A1208	-	Hef nuclease
1181	 49.12	+1	1496659..1498482	-	607	73668741	-	Mbar_A1209	-	glycyl-tRNA synthetase
1182	 30.04	-2	1498720..1500087	-	455	73668742	-	Mbar_A1210	-	hypothetical protein
1183	 37.86	0	1500560..1500868	-	102	73668743	-	Mbar_A1211	-	hypothetical protein
1184	 44.94	0	1501395..1502411	+	338	73668744	-	Mbar_A1212	-	flap endonuclease-1
1185	 45.07	0	1502566..1502940	+	124	73668745	-	Mbar_A1213	-	hypothetical protein
1186	 46.23	0	1503318..1503635	+	105	73668746	-	Mbar_A1214	-	hypothetical protein
1187	 41.11	0	1503655..1503834	+	59	73668747	-	Mbar_A1215	-	hypothetical protein
1188	 48.42	+1	1504316..1505011	+	231	73668748	-	Mbar_A1216	-	cobalt transport protein CbiM
1189	 46.23	0	1505012..1505329	+	105	73668749	-	Mbar_A1217	-	cobalt transport protein CbiN
1190	 45.72	0	1505360..1506142	+	260	73668750	-	Mbar_A1218	-	cobalt ABC transporter, permease protein
1191	 47.78	+1	1506173..1507543	+	456	73668751	-	Mbar_A1219	-	cobalt ABC transporter, ATP-binding protein
1192	 50.31	+1	1507461..1508591	+	376	73668752	-	Mbar_A1220	-	cation efflux family protein
1193	 47.66	+1	1508651..1508992	+	113	73668753	-	Mbar_A1221	-	hypothetical protein
1194	 47.13	+1	1509018..1509974	-	318	73668754	-	Mbar_A1222	-	beta-ribofuranosylaminobenzene 5'-phosphate synthase
1195	 45.05	0	1510259..1511812	-	517	73668755	-	Mbar_A1223	-	phosphoglyceromutase
1196	 43.62	0	1512050..1512652	+	200	73668756	-	Mbar_A1224	-	transcriptional regulator
1197	 39.72	0	1513225..1514148	+	307	73668757	ubiA	Mbar_A1225	-	prenyltransferase
1198	 39.51	0	1517340..1517663	-	107	73668758	-	Mbar_A1227	-	hypothetical protein
1199	 36.29	-1	1518384..1518890	-	168	73668759	-	Mbar_A1228	-	hypothetical protein
1200	 37.84	0	1519674..1520672	-	332	73668760	-	Mbar_A1229	-	hypothetical protein
1201	 40.75	0	1521202..1522590	+	462	73668761	-	Mbar_A1230	-	transposase
1202	 42.49	0	1522708..1524477	-	589	73668762	-	Mbar_A1231	-	alkaline phosphatase
1203	 39.84	0	1525301..1526437	+	378	73668763	-	Mbar_A1232	-	glycosyltransferase
1204	 44.01	0	1527301..1527993	+	230	73668764	-	Mbar_A1233	-	3,5-cyclic-nucleotide phosphodiesterase
1205	 37.24	0	1528691..1529638	+	315	73668765	-	Mbar_A1234	-	hypothetical protein
1206	 42.17	0	1530523..1531269	+	248	73668766	-	Mbar_A1235	-	hypothetical protein
1207	 41.49	0	1531362..1533200	-	612	73668767	-	Mbar_A1236	-	hypothetical protein
1208	 43.98	0	1533390..1534910	-	506	73668768	-	Mbar_A1237	-	putative regulatory protein
1209	 43.41	0	1535391..1536134	+	247	73668769	-	Mbar_A1238	-	4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate synthesis protein ThiF
1210	 40.76	0	1536268..1537236	+	322	73668770	-	Mbar_A1239	-	hypothetical protein
1211	 41.09	0	1537631..1538107	-	158	73668771	-	Mbar_A1240	-	2-cys peroxiredoxin, subunit A
41.74	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.