IslandPathversion 1.0

IslandPath Analysis: Marinomonas sp. MWYL1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.05 STD DEV: 3.35
Marinomonas sp. MWYL1, complete genome - 1..5100344
4439 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
724	 40.42	0	794105..794485	-	126	152994767	-	Mmwyl1_0733	-	hypothetical protein
725	 44.98	0	794640..796073	-	477	152994768	-	Mmwyl1_0734	-	nitrogen metabolism transcriptional regulator, NtrC, Fis family
726	 43.09	0	796070..797227	-	385	152994769	-	Mmwyl1_0735	-	signal transduction histidine kinase, nitrogen specific, NtrB
727	 45.20	0	797448..798854	-	468	152994770	-	Mmwyl1_0736	-	glutamine synthetase, type I
728	 41.12	0	799184..800635	+	483	152994771	-	Mmwyl1_0737	-	thiamine biosynthesis protein ThiI
729	 43.38	0	800884..802704	+	606	152994772	-	Mmwyl1_0738	-	GTP-binding protein TypA
730	 43.91	0	802862..803296	+	144	152994773	-	Mmwyl1_0739	-	D-tyrosyl-tRNA deacylase
731	 42.49	0	803312..805909	-	865	152994774	-	Mmwyl1_0740	-	pectinesterase
732	 42.08	0	806144..806920	-	258	152994775	-	Mmwyl1_0741	-	Sec-independent protein translocase, TatC subunit
733	 44.52	0	806956..807420	-	154	152994776	-	Mmwyl1_0742	-	twin-arginine translocation protein, TatB subunit
734	 41.55	0	807424..807642	-	72	152994777	-	Mmwyl1_0743	-	twin arginine-targeting protein translocase
735	 40.24	0	807659..807991	-	110	152994778	-	Mmwyl1_0744	-	phosphoribosyl-ATP pyrophosphohydrolase
736	 43.31	0	808008..809651	-	547	152994779	-	Mmwyl1_0745	-	2-polyprenylphenol 6-hydroxylase
737	 43.92	0	809654..810409	-	251	152994780	-	Mmwyl1_0746	-	ubiquinone/menaquinone biosynthesis methyltransferase
738	 40.73	0	810573..812099	-	508	152994781	-	Mmwyl1_0747	-	diguanylate cyclase
739	 39.77	0	812112..812732	-	206	152994782	-	Mmwyl1_0748	-	DSBA oxidoreductase
740	 43.26	0	813058..813702	+	214	152994783	-	Mmwyl1_0749	-	GTP-binding protein HSR1-related
741	 44.19	0	813772..815364	-	530	152994784	-	Mmwyl1_0750	-	glutamate--cysteine ligase
742	 48.97	+1	815590..816363	-	257	152994785	-	Mmwyl1_0751	-	imidazoleglycerol phosphate synthase, cyclase subunit
743	 45.55	0	816419..817081	-	220	152994786	-	Mmwyl1_0752	-	imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
744	 46.97	+1	817094..817687	-	197	152994787	-	Mmwyl1_0753	-	imidazoleglycerol-phosphate dehydratase
745	 41.73	0	817984..820221	+	745	152994788	-	Mmwyl1_0754	-	AsmA family protein
746	 46.15	0	820269..821321	+	350	152994789	-	Mmwyl1_0755	-	A/G-specific adenine glycosylase
747	 45.02	0	821337..822551	+	404	152994790	-	Mmwyl1_0756	-	chromate transporter
748	 45.06	0	822632..823441	-	269	152994791	-	Mmwyl1_0757	-	integrase catalytic region
749	 46.08	0	823486..823791	-	101	152994792	-	Mmwyl1_0758	-	transposase IS3/IS911 family protein
750	 39.30	-1	823940..824224	+	94	152994793	-	Mmwyl1_0759	-	hypothetical protein
751	 41.84	0	824331..824753	-	140	152994794	-	Mmwyl1_0760	-	flagellar basal body-associated protein FliL
752	 40.43	0	824898..825404	+	168	152994795	-	Mmwyl1_0761	-	disulphide bond formation protein DsbB
753	 43.10	0	825571..826041	+	156	152994796	-	Mmwyl1_0762	-	anti-RNA polymerase sigma 70 factor
754	 43.60	0	826013..826996	+	327	152994797	-	Mmwyl1_0763	-	WD-40 repeat-containing protein
755	 43.33	0	827004..827483	+	159	152994798	-	Mmwyl1_0764	-	hypothetical protein
756	 44.68	0	827668..828381	+	237	152994799	-	Mmwyl1_0765	-	tRNA (guanine-N(7)-)-methyltransferase
757	 43.36	0	828477..828875	-	132	152994800	-	Mmwyl1_0766	-	histone family protein nucleoid-structuring protein H-NS
758	 41.10	0	829255..831417	+	720	152994801	-	Mmwyl1_0767	-	RNA-binding S1 domain-containing protein
759	 44.78	0	831568..832161	-	197	152994802	-	Mmwyl1_0768	-	NAD(P)H dehydrogenase (quinone)
760	 47.01	+1	832330..833250	+	306	152994803	-	Mmwyl1_0769	-	LysR family transcriptional regulator
761	 37.79	-1	833258..833818	-	186	152994804	-	Mmwyl1_0770	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
762	 44.27	0	834117..835478	+	453	152994805	-	Mmwyl1_0771	-	UDP-N-acetylglucosamine pyrophosphorylase
763	 43.79	0	835593..837419	+	608	152994806	-	Mmwyl1_0772	-	glucosamine--fructose-6-phosphate aminotransferase, isomerizing
764	 42.91	0	837519..838667	-	382	152994807	-	Mmwyl1_0773	-	oligogalacturonide lyase
765	 43.42	0	838931..839812	+	293	152994808	-	Mmwyl1_0774	-	binding-protein-dependent transport systems inner membrane component
766	 41.78	0	839815..840726	+	303	152994809	-	Mmwyl1_0775	-	binding-protein-dependent transport systems inner membrane component
767	 44.53	0	840736..841869	+	377	152994810	-	Mmwyl1_0776	-	ABC transporter related
768	 42.35	0	841953..843239	+	428	152994811	-	Mmwyl1_0777	-	extracellular solute-binding protein
769	 44.53	0	843499..844248	+	249	152994812	-	Mmwyl1_0778	-	2-deoxy-D-gluconate 3-dehydrogenase
770	 38.83	-1	844428..845264	+	278	152994813	-	Mmwyl1_0779	-	transcriptional regulator IclR
771	 40.81	0	845513..845833	+	106	152994814	-	Mmwyl1_0780	-	cupin 2 domain-containing protein
772	 44.34	0	845882..846517	+	211	152994815	-	Mmwyl1_0781	-	hypothetical protein
773	 36.57	-1	846774..847886	-	370	152994816	-	Mmwyl1_0782	-	response regulator receiver protein
774	 44.61	0	848035..858006	+	3323	152994817	-	Mmwyl1_0783	-	glycosyl hydrolase BNR repeat-containing glycosyl hydrolase
775	 44.65	0	858091..860220	+	709	152994818	-	Mmwyl1_0784	-	TPR repeat-containing protein
776	 43.09	0	860217..861518	+	433	152994819	-	Mmwyl1_0785	-	outer membrane efflux protein
777	 45.97	0	861542..863710	+	722	152994820	-	Mmwyl1_0786	-	ABC transporter related
778	 44.47	0	863700..864911	+	403	152994821	-	Mmwyl1_0787	-	HlyD family type I secretion membrane fusion protein
779	 36.42	-1	865416..865868	-	150	152994822	-	Mmwyl1_0788	-	hypothetical protein
780	 41.87	0	866124..868337	-	737	152994823	-	Mmwyl1_0789	-	protein of unknown function DUF940 membrane lipoprotein putative
781	 38.13	-1	868337..869128	-	263	152994824	-	Mmwyl1_0790	-	hypothetical protein
782	 38.01	-1	869141..869845	-	234	152994825	-	Mmwyl1_0791	-	putative regulator
783	 60.70	+2	869949..870317	+	122	152994826	-	Mmwyl1_0792	-	hypothetical protein
784	 43.15	0	870654..871988	+	444	152994827	-	Mmwyl1_0793	-	hypothetical protein
785	 45.71	0	872058..874667	+	869	152994828	-	Mmwyl1_0794	-	polysaccharide export protein
786	 46.41	+1	874844..875791	+	315	152994829	-	Mmwyl1_0795	-	lipopolysaccharide biosynthesis protein
787	 36.88	-1	875890..876369	-	159	152994830	-	Mmwyl1_0796	-	hypothetical protein
788	 44.77	0	876936..878369	-	477	152994831	-	Mmwyl1_0797	-	RNA-metabolising metallo-beta-lactamase
789	 36.45	-1	879358..879678	+	106	152994832	-	Mmwyl1_0798	-	AsnC family transcriptional regulator
790	 46.00	0	879984..880970	+	328	152994833	-	Mmwyl1_0799	-	NAD-dependent epimerase/dehydratase
791	 44.47	0	881133..882308	+	391	152994834	-	Mmwyl1_0800	-	UDP-glucose/GDP-mannose dehydrogenase
792	 44.18	0	882417..883532	+	371	152994835	-	Mmwyl1_0801	-	UDP-N-acetylglucosamine 2-epimerase
793	 42.11	0	883603..884889	+	428	152994836	-	Mmwyl1_0802	-	UDP-N-acetyl-D-mannosamine dehydrogenase
794	 29.49	-2	884901..885863	+	320	152994837	-	Mmwyl1_0803	-	hypothetical protein
795	 28.82	-2	885882..887099	+	405	152994838	-	Mmwyl1_0804	-	polysaccharide biosynthesis protein
796	 33.33	-2	887133..888266	+	377	152994839	-	Mmwyl1_0805	-	glycosyl transferase group 1
797	 34.98	-2	888332..889363	+	343	152994840	-	Mmwyl1_0806	-	putative poly-gamma-glutamate biosynthesis (capsule formation)-like protein
798	 33.63	-2	889356..890714	+	452	152994841	-	Mmwyl1_0807	-	coenzyme F390 synthetase-like protein
799	 42.82	0	890717..892855	+	712	152994842	-	Mmwyl1_0808	-	alcohol dehydrogenase
800	 37.29	-1	892852..894495	+	547	152994843	-	Mmwyl1_0809	-	heparinase II/III family protein
801	 39.29	-1	894492..895667	+	391	152994844	-	Mmwyl1_0810	-	glycosyl transferase group 1
802	 42.89	0	895657..896598	+	313	152994845	-	Mmwyl1_0811	-	NAD-dependent epimerase/dehydratase
803	 45.16	0	896611..897168	+	185	152994846	-	Mmwyl1_0812	-	sugar transferase
804	 42.58	0	897438..899417	+	659	152994847	-	Mmwyl1_0813	-	polysaccharide biosynthesis protein CapD
805	 42.59	0	900212..901540	+	442	152994848	-	Mmwyl1_0814	-	hypothetical protein
806	 44.18	0	902189..903202	+	337	152994849	-	Mmwyl1_0816	-	UDP-glucose 4-epimerase
807	 39.93	0	903344..903646	+	100	152994850	-	Mmwyl1_0817	-	DNA polymerase beta subunit
808	 41.77	0	903643..904104	+	153	152994851	-	Mmwyl1_0818	-	hypothetical protein
809	 38.71	-1	904177..904269	-	30	152994852	-	Mmwyl1_0819	-	Il-IS_3, transposase
810	 44.71	0	904752..906149	+	465	152994853	-	Mmwyl1_0820	-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
811	 39.51	-1	906802..908097	+	431	152994854	-	Mmwyl1_0821	-	UDP-glucose/GDP-mannose dehydrogenase
812	 39.64	-1	908132..909082	+	316	152994855	-	Mmwyl1_0822	-	oxidoreductase domain-containing protein
813	 43.13	0	909085..909666	+	193	152994856	-	Mmwyl1_0823	-	WbbJ protein
814	 45.28	0	909663..910742	+	359	152994857	-	Mmwyl1_0824	-	DegT/DnrJ/EryC1/StrS aminotransferase
815	 38.74	-1	911071..911181	+	36	152994858	-	Mmwyl1_0826	-	glucose-1-phosphate thymidylyltransferase
816	 31.03	-2	911190..912233	+	347	152994859	-	Mmwyl1_0827	-	4-alpha-L-fucosyltransferase
817	 34.99	-2	912244..912906	+	220	152994860	-	Mmwyl1_0828	-	acyltransferase
818	 35.19	-2	912907..913821	+	304	152994861	-	Mmwyl1_0829	-	hypothetical protein
819	 31.09	-2	913818..914621	+	267	152994862	-	Mmwyl1_0830	-	phytanoyl-CoA dioxygenase
820	 33.19	-2	914618..915310	+	230	152994863	-	Mmwyl1_0831	-	WbqC-like family protein
821	 40.21	0	915310..916443	+	377	152994864	-	Mmwyl1_0832	-	TDP-4-oxo-6-deoxy-D-glucose transaminase
822	 33.53	-2	916436..917449	+	337	152994865	-	Mmwyl1_0833	-	acyltransferase 3
823	 36.58	-1	917446..918861	+	471	152994866	-	Mmwyl1_0834	-	polysaccharide biosynthesis protein
43.05	MEAN

3.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.