IslandPathversion 1.0

IslandPath Analysis: Marinomonas sp. MWYL1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.05 STD DEV: 3.35
Marinomonas sp. MWYL1, complete genome - 1..5100344
4439 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
513	 44.63	0	587594..588142	+	182	152994556	-	Mmwyl1_0520	-	tripartite ATP-independent periplasmic transporter DctQ
514	 47.71	+1	588146..589432	+	428	152994557	-	Mmwyl1_0521	-	TRAP dicarboxylate transporter, DctM subunit
515	 45.95	0	589493..590245	+	250	152994558	-	Mmwyl1_0522	-	hypothetical protein
516	 48.65	+1	590635..591189	-	184	152994559	-	Mmwyl1_0523	-	TetR family transcriptional regulator
517	 51.04	+2	591289..592344	+	351	152994560	-	Mmwyl1_0524	-	aldo/keto reductase
518	 44.31	0	592533..593270	-	245	152994561	-	Mmwyl1_0525	-	GntR family transcriptional regulator
519	 44.63	0	593491..594561	+	356	152994562	-	Mmwyl1_0526	-	TRAP dicarboxylate transporter- DctP subunit
520	 48.07	+1	594777..597659	+	960	152994563	-	Mmwyl1_0527	-	peptidoglycan-binding LysM
521	 44.22	0	597646..598233	+	195	152994564	-	Mmwyl1_0528	-	hypothetical protein
522	 46.80	+1	598223..598816	+	197	152994565	-	Mmwyl1_0529	-	hypothetical protein
523	 45.01	0	598806..599396	+	196	152994566	-	Mmwyl1_0530	-	hypothetical protein
524	 46.13	0	599386..599979	+	197	152994567	-	Mmwyl1_0531	-	hypothetical protein
525	 45.64	0	599969..600553	+	194	152994568	-	Mmwyl1_0532	-	hypothetical protein
526	 45.29	0	600543..601136	+	197	152994569	-	Mmwyl1_0533	-	hypothetical protein
527	 45.01	0	601126..601716	+	196	152994570	-	Mmwyl1_0534	-	hypothetical protein
528	 47.25	+1	601799..602689	-	296	152994571	-	Mmwyl1_0535	-	LysR family transcriptional regulator
529	 45.05	0	602798..604009	+	403	152994572	-	Mmwyl1_0536	-	oxidoreductase domain-containing protein
530	 41.40	0	604234..605175	+	313	152994573	-	Mmwyl1_0537	-	auxin efflux carrier
531	 43.93	0	605258..606097	-	279	152994574	-	Mmwyl1_0538	-	2OG-Fe(II) oxygenase
532	 43.56	0	606647..607213	+	188	152994575	-	Mmwyl1_0539	-	hypothetical protein
533	 44.59	0	607213..607683	+	156	152994576	-	Mmwyl1_0540	-	Holliday junction resolvase YqgF
534	 44.38	0	607768..608265	+	165	152994577	-	Mmwyl1_0541	-	phosphoribosyltransferase
535	 45.87	0	608504..609508	+	334	152994578	-	Mmwyl1_0542	-	aspartate carbamoyltransferase catalytic subunit
536	 47.26	+1	609510..610787	+	425	152994579	-	Mmwyl1_0543	-	dihydroorotase
537	 40.44	0	611013..612011	+	332	152994580	-	Mmwyl1_0544	-	diguanylate cyclase
538	 43.76	0	612190..612918	+	242	152994581	-	Mmwyl1_0545	-	alanine racemase domain-containing protein
539	 43.36	0	613015..613842	+	275	152994582	-	Mmwyl1_0546	-	pyrroline-5-carboxylate reductase
540	 38.49	-1	613859..614401	+	180	152994583	-	Mmwyl1_0547	-	protein of unknown function YGGT
541	 42.63	0	614560..615054	+	164	152994584	-	Mmwyl1_0548	-	pantetheine-phosphate adenylyltransferase
542	 38.89	-1	615122..615373	+	83	152994585	-	Mmwyl1_0549	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
543	 44.22	0	615504..617129	+	541	152994586	-	Mmwyl1_0550	-	sodium/hydrogen exchanger
544	 45.83	0	617195..618298	-	367	152994587	-	Mmwyl1_0551	-	Ion transport 2 domain-containing protein
545	 47.26	+1	618313..618786	-	157	152994588	-	Mmwyl1_0552	-	RNA methyltransferase
546	 41.94	0	619226..619504	-	92	152994589	-	Mmwyl1_0553	-	hypothetical protein
547	 39.63	-1	619803..620771	+	322	152994590	-	Mmwyl1_0554	-	hypothetical protein
548	 45.34	0	620809..621924	-	371	152994591	-	Mmwyl1_0555	-	hypothetical protein
549	 39.06	-1	622397..622588	-	63	152994592	-	Mmwyl1_0556	-	hypothetical protein
550	 43.31	0	625320..625700	-	126	152994593	-	Mmwyl1_0558	-	response regulator receiver protein
551	 36.22	-2	626033..626482	+	149	152994594	-	Mmwyl1_0559	-	hypothetical protein
552	 39.81	0	626457..626564	-	35	152994595	-	Mmwyl1_0560	-	hypothetical protein
553	 44.86	0	627619..628347	-	242	152994596	-	Mmwyl1_0561	-	KilA domain-containing protein
554	 42.54	0	628414..628641	-	75	152994597	-	Mmwyl1_0562	-	hypothetical protein
555	 44.88	0	628961..630121	-	386	152994598	-	Mmwyl1_0563	-	pentapeptide repeat-containing protein
556	 47.21	+1	630192..631286	-	364	152994599	-	Mmwyl1_0564	-	hypothetical protein
557	 45.17	0	631277..631969	-	230	152994600	-	Mmwyl1_0565	-	hypothetical protein
558	 48.15	+1	631972..632511	-	179	152994601	-	Mmwyl1_0566	-	hypothetical protein
559	 46.96	+1	632511..633185	-	224	152994602	-	Mmwyl1_0567	-	hypothetical protein
560	 42.59	0	633188..633457	-	89	152994603	-	Mmwyl1_0568	-	hypothetical protein
561	 41.88	0	633468..634298	-	276	152994604	-	Mmwyl1_0569	-	hypothetical protein
562	 45.20	0	634295..634867	-	190	152994605	-	Mmwyl1_0570	-	hypothetical protein
563	 47.86	+1	634867..635589	-	240	152994606	-	Mmwyl1_0571	-	hypothetical protein
564	 44.94	0	635586..636740	-	384	152994607	-	Mmwyl1_0572	-	uncharacterized phage Mu protein GP47-like protein
565	 42.59	0	636737..637060	-	107	152994608	-	Mmwyl1_0573	-	hypothetical protein
566	 48.04	+1	637063..639258	-	731	152994609	-	Mmwyl1_0574	-	TP901 family phage tail tape measure protein
567	 45.63	0	639424..639732	-	102	152994610	-	Mmwyl1_0575	-	hypothetical protein
568	 44.83	0	639743..640090	-	115	152994611	-	Mmwyl1_0576	-	hypothetical protein
569	 43.75	0	640071..640550	-	159	152994612	-	Mmwyl1_0577	-	hypothetical protein
570	 47.77	+1	640547..641128	-	193	152994613	-	Mmwyl1_0578	-	hypothetical protein
571	 45.27	0	641141..641584	-	147	152994614	-	Mmwyl1_0579	-	prophage PSPPH06, putative tail tube protein
572	 50.26	+2	641595..642728	-	377	152994615	-	Mmwyl1_0580	-	prophage PSPPH06, putative tail sheath protein
573	 49.11	+1	642715..643386	-	223	152994616	-	Mmwyl1_0581	-	hypothetical protein
574	 49.89	+2	643386..643838	-	150	152994617	-	Mmwyl1_0582	-	hypothetical protein
575	 48.15	+1	643839..644324	-	161	152994618	-	Mmwyl1_0583	-	putative phage head completeion protein
576	 49.85	+2	644432..645103	-	223	152994619	-	Mmwyl1_0584	-	phage small terminase subunit
577	 45.80	0	645409..646443	-	344	152994620	-	Mmwyl1_0585	-	P2 family phage major capsid protein
578	 47.98	+1	646503..647417	-	304	152994621	-	Mmwyl1_0586	-	hypothetical protein
579	 48.28	+1	647630..649435	+	601	152994622	-	Mmwyl1_0587	-	hypothetical protein
580	 48.48	+1	649469..650485	+	338	152994623	-	Mmwyl1_0588	-	PBSX family phage portal protein
581	 34.98	-2	650513..650815	-	100	152994624	-	Mmwyl1_0589	-	hypothetical protein
582	 42.40	0	651040..651447	+	135	152994625	-	Mmwyl1_0590	-	hypothetical protein
583	 45.74	0	651930..652211	-	93	152994626	-	Mmwyl1_0592	-	hypothetical protein
584	 49.30	+1	652204..652629	-	141	152994627	-	Mmwyl1_0593	-	hypothetical protein
585	 38.13	-1	652945..653340	+	131	152994628	-	Mmwyl1_0594	-	hypothetical protein
586	 37.74	-1	653342..653863	+	173	152994629	-	Mmwyl1_0595	-	hypothetical protein
587	 29.96	-2	653894..654694	+	266	152994630	-	Mmwyl1_0596	-	hypothetical protein
588	 34.86	-2	655234..656283	+	349	152994631	-	Mmwyl1_0597	-	hypothetical protein
589	 31.35	-2	656283..657542	+	419	152994632	-	Mmwyl1_0598	-	hypothetical protein
590	 43.59	0	657623..657895	-	90	152994633	-	Mmwyl1_0599	-	hypothetical protein
591	 36.83	-1	658349..659035	+	228	152994634	-	Mmwyl1_0600	-	Ion transport protein
592	 39.42	-1	659069..659791	-	240	152994635	-	Mmwyl1_0601	-	HNH endonuclease
593	 41.37	0	660508..663681	+	1057	152994636	-	Mmwyl1_0602	-	integral membrane sensor hybrid histidine kinase
594	 42.53	0	663712..664059	+	115	152994637	-	Mmwyl1_0603	-	hypothetical protein
595	 43.39	0	664289..665590	+	433	152994638	-	Mmwyl1_0604	-	extracellular solute-binding protein
596	 46.19	0	665694..666572	+	292	152994639	-	Mmwyl1_0605	-	binding-protein-dependent transport systems inner membrane component
597	 46.76	+1	666569..667417	+	282	152994640	-	Mmwyl1_0606	-	binding-protein-dependent transport systems inner membrane component
598	 46.44	+1	667420..668487	+	355	152994641	-	Mmwyl1_0607	-	ABC transporter related
599	 45.09	0	668495..669268	+	257	152994642	-	Mmwyl1_0608	-	glycerophosphodiester phosphodiesterase
600	 46.25	0	669317..670075	+	252	152994643	-	Mmwyl1_0609	-	DeoR family transcriptional regulator
601	 46.76	+1	670083..670931	+	282	152994644	-	Mmwyl1_0610	-	HAD family hydrolase
602	 43.29	0	670964..671887	-	307	152994645	-	Mmwyl1_0611	-	hypothetical protein
603	 44.40	0	671931..672698	-	255	152994646	-	Mmwyl1_0612	-	transcriptional regulator IclR
604	 43.04	0	672872..674056	+	394	152994647	-	Mmwyl1_0613	-	protein of unknown function UPF0052 and CofD
605	 40.92	0	674198..675238	+	346	152994648	-	Mmwyl1_0614	-	response regulator receiver protein
606	 41.33	0	675243..676205	+	320	152994649	-	Mmwyl1_0615	-	diguanylate cyclase
607	 43.69	0	676227..676709	-	160	152994650	-	Mmwyl1_0616	-	hypothetical protein
608	 44.84	0	676935..677855	+	306	152994651	-	Mmwyl1_0617	-	aldose 1-epimerase
609	 43.11	0	678011..678787	-	258	152994652	-	Mmwyl1_0618	-	exodeoxyribonuclease III Xth
610	 42.90	0	678907..679554	+	215	152994653	-	Mmwyl1_0619	-	orotate phosphoribosyltransferase
611	 43.94	0	679596..680189	-	197	152994654	-	Mmwyl1_0620	-	nucleoid occlusion protein
612	 43.23	0	680267..681175	-	302	152994655	-	Mmwyl1_0621	-	acetylglutamate kinase
43.05	MEAN

3.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.