IslandPathversion 1.0

IslandPath Analysis: Marinomonas sp. MWYL1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.05 STD DEV: 3.35
Marinomonas sp. MWYL1, complete genome - 1..5100344
4439 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2897	 38.66	-1	3317991..3318854	+	287	152996940	-	Mmwyl1_2929	-	alpha/beta hydrolase fold
2898	 44.08	0	3319289..3320200	+	303	152996941	-	Mmwyl1_2930	-	homocysteine S-methyltransferase
2899	 42.21	0	3320281..3320877	-	198	152996942	-	Mmwyl1_2931	-	hypothetical protein
2900	 41.35	0	3320898..3322544	-	548	152996943	-	Mmwyl1_2932	-	hypothetical protein
2901	 42.37	0	3322541..3323812	-	423	152996944	-	Mmwyl1_2933	-	PqiA family integral membrane protein
2902	 39.32	-1	3323994..3324494	-	166	152996945	-	Mmwyl1_2934	-	hypothetical protein
2903	 40.57	0	3324608..3325450	-	280	152996946	-	Mmwyl1_2935	-	late embryogenesis abundant protein 2
2904	 43.11	0	3325457..3326458	-	333	152996947	-	Mmwyl1_2936	-	hypothetical protein
2905	 39.27	-1	3326485..3326838	-	117	152996948	-	Mmwyl1_2937	-	hypothetical protein
2906	 45.88	0	3327414..3328481	-	355	152996949	-	Mmwyl1_2938	-	23S rRNA pseudouridine synthase F
2907	 41.77	0	3328728..3329213	+	161	152996950	-	Mmwyl1_2939	-	cytochrome B561
2908	 41.39	0	3329227..3329586	-	119	152996951	-	Mmwyl1_2940	-	hypothetical protein
2909	 46.67	+1	3329733..3330302	-	189	152996952	-	Mmwyl1_2941	-	PfpI family intracellular peptidase
2910	 42.73	0	3330678..3331592	-	304	152996953	-	Mmwyl1_2942	-	MscS mechanosensitive ion channel
2911	 38.19	-1	3332034..3332651	-	205	152996954	-	Mmwyl1_2943	-	multiple antibiotic resistance (MarC)-related protein
2912	 42.32	0	3332976..3333587	-	203	152996955	-	Mmwyl1_2944	-	lysine exporter protein LysE/YggA
2913	 40.38	0	3333977..3334756	-	259	152996956	-	Mmwyl1_2945	-	alpha/beta hydrolase fold
2914	 39.54	-1	3334910..3335215	-	101	152996957	-	Mmwyl1_2946	-	NIPSNAP family protein
2915	 38.78	-1	3335374..3335832	-	152	152996958	-	Mmwyl1_2947	-	GCN5-related N-acetyltransferase
2916	 44.68	0	3335917..3336348	-	143	152996959	-	Mmwyl1_2948	-	GCN5-related N-acetyltransferase
2917	 40.74	0	3336877..3337362	-	161	152996960	-	Mmwyl1_2949	-	hypothetical protein
2918	 43.13	0	3337586..3338218	-	210	152996961	-	Mmwyl1_2950	-	chloramphenicol O-acetyltransferase
2919	 36.19	-2	3338322..3338741	-	139	152996962	-	Mmwyl1_2951	-	hypothetical protein
2920	 38.39	-1	3339177..3339749	-	190	152996963	-	Mmwyl1_2952	-	hypothetical protein
2921	 44.94	0	3339833..3340642	-	269	152996964	-	Mmwyl1_2953	-	integrase catalytic region
2922	 46.08	0	3340687..3340992	-	101	152996965	-	Mmwyl1_2954	-	transposase IS3/IS911 family protein
2923	 37.80	-1	3341153..3341533	-	126	152996966	-	Mmwyl1_2955	-	glyoxalase/bleomycin resistance protein/dioxygenase
2924	 42.37	0	3341617..3342081	-	154	152996967	-	Mmwyl1_2956	-	hypothetical protein
2925	 36.36	-1	3342202..3342762	-	186	152996968	-	Mmwyl1_2957	-	hypothetical protein
2926	 45.41	0	3343072..3344214	-	380	152996969	-	Mmwyl1_2958	-	putative transposase
2927	 43.66	0	3344202..3345053	-	283	152996970	-	Mmwyl1_2959	-	phage integrase family protein
2928	 41.73	0	3345829..3346233	-	134	152996971	-	Mmwyl1_2960	-	hypothetical protein
2929	 48.23	+1	3346215..3347852	-	545	152996972	-	Mmwyl1_2961	-	NAD+ synthetase
2930	 41.76	0	3347926..3348186	+	86	152996973	-	Mmwyl1_2962	-	hypothetical protein
2931	 44.64	0	3348170..3348673	-	167	152996974	-	Mmwyl1_2963	-	hypothetical protein
2932	 43.65	0	3348679..3349560	-	293	152996975	-	Mmwyl1_2964	-	hypothetical protein
2933	 43.04	0	3349921..3350466	-	181	152996976	-	Mmwyl1_2965	-	Tfp pilus assembly protein FimT
2934	 45.10	0	3350552..3351418	-	288	152996977	-	Mmwyl1_2966	-	alpha/beta hydrolase
2935	 44.07	0	3351694..3353118	+	474	152996978	-	Mmwyl1_2967	-	para-aminobenzoate synthase, subunit I
2936	 44.24	0	3353127..3353777	+	216	152996979	-	Mmwyl1_2968	-	NUDIX hydrolase
2937	 41.09	0	3353906..3354640	+	244	152996980	-	Mmwyl1_2969	-	phosphoadenosine phosphosulfate reductase
2938	 39.56	-1	3354705..3355025	-	106	152996981	-	Mmwyl1_2970	-	LysR family transcriptional regulator
2939	 48.48	+1	3355137..3356483	+	448	152996982	-	Mmwyl1_2971	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
2940	 46.08	0	3357463..3357768	+	101	152996983	-	Mmwyl1_2972	-	transposase IS3/IS911 family protein
2941	 44.94	0	3357813..3358622	+	269	152996984	-	Mmwyl1_2973	-	integrase catalytic region
2942	 37.47	-1	3358821..3359594	-	257	152996985	-	Mmwyl1_2974	-	hypothetical protein
2943	 44.35	0	3361160..3362539	-	459	152996986	-	Mmwyl1_2975	-	multidrug efflux pump VmrA
2944	 43.10	0	3362621..3363562	+	313	152996987	-	Mmwyl1_2976	-	LysR family transcriptional regulator
2945	 45.24	0	3364000..3364503	-	167	152996988	-	Mmwyl1_2977	-	GCN5-related N-acetyltransferase
2946	 42.67	0	3364511..3365527	-	338	152996989	-	Mmwyl1_2978	-	hypothetical protein
2947	 42.06	0	3365540..3366364	-	274	152996990	-	Mmwyl1_2979	-	TPR repeat-containing protein
2948	 43.14	0	3366482..3368317	+	611	152996991	-	Mmwyl1_2980	-	cytochrome c biogenesis protein transmembrane region
2949	 44.37	0	3368568..3369011	+	147	152996992	-	Mmwyl1_2981	-	acetyl-CoA carboxylase, biotin carboxyl carrier protein
2950	 44.07	0	3369032..3370372	+	446	152996993	-	Mmwyl1_2982	-	acetyl-CoA carboxylase, biotin carboxylase
2951	 46.58	+1	3370492..3371382	+	296	152996994	-	Mmwyl1_2983	-	ribosomal protein L11 methyltransferase
2952	 44.30	0	3371468..3372826	+	452	152996995	-	Mmwyl1_2984	-	Zinc finger-domain-containing protein
2953	 43.55	0	3373146..3374114	+	322	152996996	-	Mmwyl1_2985	-	nifR3 family TIM-barrel protein
2954	 43.37	0	3374233..3374511	+	92	152996997	-	Mmwyl1_2986	-	Fis family transcriptional regulator
2955	 46.24	0	3374596..3376176	+	526	152996998	-	Mmwyl1_2987	-	phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
2956	 47.94	+1	3376259..3377545	+	428	152996999	-	Mmwyl1_2988	-	phosphoribosylamine--glycine ligase
2957	 40.48	0	3377614..3377865	-	83	152997000	-	Mmwyl1_2989	-	hypothetical protein
2958	 39.03	-1	3377924..3380221	+	765	152997001	-	Mmwyl1_2990	-	diverse 7TM receptor extracellular region 2
2959	 42.40	0	3380266..3380607	+	113	152997002	-	Mmwyl1_2991	-	histidine triad (HIT) protein
2960	 45.66	0	3380622..3381254	+	210	152997003	-	Mmwyl1_2992	-	hypothetical protein
2961	 44.08	0	3381257..3381898	+	213	152997004	-	Mmwyl1_2993	-	pyridoxamine 5'-phosphate oxidase
2962	 45.16	0	3381943..3382500	-	185	152997005	-	Mmwyl1_2994	-	putative alkylated DNA repair protein
2963	 38.71	-1	3382526..3383251	+	241	152997006	-	Mmwyl1_2995	-	hypothetical protein
2964	 41.90	0	3383551..3385815	+	754	152997007	-	Mmwyl1_2996	-	ribonucleotide-diphosphate reductase subunit alpha
2965	 41.53	0	3385982..3387115	+	377	152997008	-	Mmwyl1_2997	-	ribonucleotide-diphosphate reductase subunit beta
2966	 41.08	0	3387099..3387395	+	98	152997009	-	Mmwyl1_2998	-	ferredoxin
2967	 39.44	-1	3387409..3388014	-	201	152997010	-	Mmwyl1_2999	-	CDP-alcohol phosphatidyltransferase
2968	 41.34	0	3388128..3388889	+	253	152997011	-	Mmwyl1_3000	-	alpha/beta hydrolase fold
2969	 40.77	0	3388893..3389807	-	304	152997012	-	Mmwyl1_3001	-	hypothetical protein
2970	 40.01	0	3389813..3391819	-	668	152997013	-	Mmwyl1_3002	-	TonB-dependent receptor plug
2971	 42.33	0	3391822..3392688	-	288	152997014	-	Mmwyl1_3003	-	prephenate dehydratase
2972	 35.11	-2	3392801..3393082	+	93	152997015	-	Mmwyl1_3004	-	hypothetical protein
2973	 40.06	0	3393079..3393732	-	217	152997016	-	Mmwyl1_3005	-	two component LuxR family transcriptional regulator
2974	 43.64	0	3393761..3395719	-	652	152997017	-	Mmwyl1_3006	-	acetate--CoA ligase
2975	 43.18	0	3395819..3396559	-	246	152997018	-	Mmwyl1_3007	-	methyltransferase type 11
2976	 40.10	0	3396647..3397267	-	206	152997019	-	Mmwyl1_3008	-	HAD family hydrolase
2977	 45.00	0	3397549..3398577	+	342	152997020	-	Mmwyl1_3009	-	TRAP transporter solute receptor TAXI family protein
2978	 44.92	0	3398674..3400797	+	707	152997021	-	Mmwyl1_3010	-	TRAP transporter, 4TM/12TM fusion protein
2979	 41.20	0	3400926..3402374	-	482	152997022	-	Mmwyl1_3011	-	peptidase M23B
2980	 43.18	0	3402786..3403658	+	290	152997023	-	Mmwyl1_3012	-	formate dehydrogenase family accessory protein FdhD
2981	 43.37	0	3403678..3405132	-	484	152997024	-	Mmwyl1_3013	-	cation transporter
2982	 45.34	0	3405619..3406551	-	310	152997025	-	Mmwyl1_3014	-	electron transfer flavoprotein alpha subunit
2983	 44.00	0	3406551..3407300	-	249	152997026	-	Mmwyl1_3015	-	electron transfer flavoprotein alpha/beta-subunit
2984	 42.69	0	3407321..3407737	-	138	152997027	-	Mmwyl1_3016	-	thioesterase superfamily protein
2985	 44.07	0	3407768..3409621	-	617	152997028	-	Mmwyl1_3017	-	feruloyl-CoA synthase
2986	 45.81	0	3409755..3411533	-	592	152997029	-	Mmwyl1_3018	-	acyl-CoA dehydrogenase domain-containing protein
2987	 46.88	+1	3411547..3412314	-	255	152997030	-	Mmwyl1_3019	-	short-chain dehydrogenase/reductase SDR
2988	 43.35	0	3412497..3413255	-	252	152997031	-	Mmwyl1_3020	-	enoyl-CoA hydratase/isomerase
2989	 46.72	+1	3413347..3414549	-	400	152997032	-	Mmwyl1_3021	-	Acetyl-CoA C-acetyltransferase
2990	 47.25	+1	3414583..3416148	-	521	152997033	-	Mmwyl1_3022	-	coenzyme A transferase
2991	 41.45	0	3416498..3417532	+	344	152997034	-	Mmwyl1_3023	-	TRAP dicarboxylate transporter- DctP subunit
2992	 41.52	0	3417821..3418858	+	345	152997035	-	Mmwyl1_3024	-	TRAP dicarboxylate transporter- DctP subunit
2993	 41.67	0	3418892..3419395	+	167	152997036	-	Mmwyl1_3025	-	hypothetical protein
2994	 43.41	0	3419388..3420707	+	439	152997037	-	Mmwyl1_3026	-	TRAP C4-dicarboxylate transport system permease DctM subunit
2995	 41.06	0	3420815..3421306	+	163	152997038	-	Mmwyl1_3027	-	MarR family transcriptional regulator
2996	 40.39	0	3421437..3425717	-	1426	152997039	-	Mmwyl1_3028	-	multi-sensor hybrid histidine kinase
43.05	MEAN

3.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.