IslandPathversion 1.0

IslandPath Analysis: Marinomonas sp. MWYL1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.05 STD DEV: 3.35
Marinomonas sp. MWYL1, complete genome - 1..5100344
4439 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2688	 42.47	0	3069479..3070561	-	360	152996731	-	Mmwyl1_2718	-	periplasmic binding protein
2689	 40.40	0	3070776..3072743	-	655	152996732	-	Mmwyl1_2719	-	methyl-accepting chemotaxis sensory transducer
2690	 43.29	0	3073158..3073388	-	76	152996733	-	Mmwyl1_2720	-	hypothetical protein
2691	 46.85	+1	3073463..3074239	-	258	152996734	-	Mmwyl1_2721	-	electron transfer flavoprotein alpha/beta-subunit
2692	 44.86	0	3074229..3075503	-	424	152996735	-	Mmwyl1_2722	-	electron transfer flavoprotein alpha subunit
2693	 45.48	0	3075503..3077428	-	641	152996736	-	Mmwyl1_2723	-	hypothetical protein
2694	 45.38	0	3077611..3079677	-	688	152996737	-	Mmwyl1_2724	-	NADH:flavin oxidoreductase/NADH oxidase
2695	 42.67	0	3079774..3080319	-	181	152996738	-	Mmwyl1_2725	-	hypothetical protein
2696	 43.76	0	3080385..3081362	-	325	152996739	-	Mmwyl1_2726	-	membrane dipeptidase
2697	 42.39	0	3082017..3082712	-	231	152996740	-	Mmwyl1_2727	-	hypothetical protein
2698	 35.34	-2	3083254..3083652	-	132	152996741	-	Mmwyl1_2728	-	hypothetical protein
2699	 34.74	-2	3083765..3084760	-	331	152996742	-	Mmwyl1_2729	-	5'-nucleotidase
2700	 42.59	0	3085189..3086376	-	395	152996743	-	Mmwyl1_2730	-	tRNA synthetase class II (G H P and S)
2701	 42.80	0	3086651..3088795	-	714	152996744	-	Mmwyl1_2731	-	diguanylate cyclase
2702	 44.86	0	3089227..3090033	+	268	152996745	-	Mmwyl1_2732	-	peptidase M48 Ste24p
2703	 43.55	0	3090520..3093417	+	965	152996746	-	Mmwyl1_2733	-	putative periplasmic ligand-binding sensor protein
2704	 42.72	0	3093502..3096195	-	897	152996747	-	Mmwyl1_2734	-	Beta-galactosidase
2705	 46.82	+1	3096732..3098021	-	429	152996748	-	Mmwyl1_2735	-	fumarylacetoacetase
2706	 47.38	+1	3098073..3098720	-	215	152996749	-	Mmwyl1_2736	-	maleylacetoacetate isomerase
2707	 45.40	0	3098732..3099808	-	358	152996750	-	Mmwyl1_2737	-	4-hydroxyphenylpyruvate dioxygenase
2708	 45.32	0	3099958..3101283	-	441	152996751	-	Mmwyl1_2738	-	homogentisate 1,2-dioxygenase
2709	 43.68	0	3101495..3101929	+	144	152996752	-	Mmwyl1_2739	-	MarR family transcriptional regulator
2710	 41.64	0	3101946..3102812	-	288	152996753	-	Mmwyl1_2740	-	MscS mechanosensitive ion channel
2711	 46.69	+1	3103227..3104102	+	291	152996754	-	Mmwyl1_2741	-	metal-dependent protein hydrolase
2712	 28.63	-2	3104291..3104779	-	162	152996755	-	Mmwyl1_2742	-	hypothetical protein
2713	 40.48	0	3105054..3106382	-	442	152996756	-	Mmwyl1_2743	-	methyl-accepting chemotaxis sensory transducer
2714	 41.58	0	3106946..3107491	-	181	152996757	-	Mmwyl1_2744	-	hypothetical protein
2715	 44.58	0	3107488..3107976	-	162	152996758	-	Mmwyl1_2745	-	hypothetical protein
2716	 42.24	0	3108038..3108643	-	201	152996759	-	Mmwyl1_2746	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
2717	 44.69	0	3108884..3109156	-	90	152996760	-	Mmwyl1_2747	-	hypothetical protein
2718	 36.30	-2	3109378..3110994	-	538	152996761	-	Mmwyl1_2748	-	hypothetical protein
2719	 37.73	-1	3111118..3111663	-	181	152996762	-	Mmwyl1_2749	-	hypothetical protein
2720	 44.93	0	3112140..3112415	+	91	152996763	-	Mmwyl1_2750	-	hypothetical protein
2721	 49.87	+2	3112433..3113914	-	493	152996764	-	Mmwyl1_2751	-	carboxypeptidase Taq
2722	 45.06	0	3114070..3115809	-	579	152996765	-	Mmwyl1_2752	-	D-lactate dehydrogenase
2723	 38.69	-1	3115970..3116398	-	142	152996766	-	Mmwyl1_2753	-	BLUF domain-containing protein
2724	 44.44	0	3116570..3117442	-	290	152996767	-	Mmwyl1_2754	-	esterase/lipase/thioesterase family protein
2725	 42.99	0	3117698..3119074	+	458	152996768	-	Mmwyl1_2755	-	FAD linked oxidase domain-containing protein
2726	 42.10	0	3119189..3120055	-	288	152996769	-	Mmwyl1_2756	-	formyltetrahydrofolate deformylase
2727	 44.50	0	3120163..3120816	-	217	152996770	-	Mmwyl1_2757	-	sarcosine oxidase gamma subunit
2728	 46.59	+1	3120809..3123841	-	1010	152996771	-	Mmwyl1_2758	-	sarcosine oxidase alpha subunit family protein
2729	 45.00	0	3123853..3124152	-	99	152996772	-	Mmwyl1_2759	-	sarcosine oxidase delta subunit family protein
2730	 47.53	+1	3124185..3125438	-	417	152996773	-	Mmwyl1_2760	-	sarcosine oxidase beta subunit family protein
2731	 44.87	0	3125789..3128155	-	788	152996774	-	Mmwyl1_2761	-	glycoside hydrolase family 3 protein
2732	 43.98	0	3128788..3130083	+	431	152996775	-	Mmwyl1_2762	-	extracellular solute-binding protein
2733	 41.03	0	3130154..3131101	+	315	152996776	-	Mmwyl1_2763	-	binding-protein-dependent transport systems inner membrane component
2734	 44.93	0	3131114..3131941	+	275	152996777	-	Mmwyl1_2764	-	binding-protein-dependent transport systems inner membrane component
2735	 44.03	0	3131974..3133095	+	373	152996778	-	Mmwyl1_2765	-	ABC transporter related
2736	 46.81	+1	3133144..3133566	-	140	152996779	-	Mmwyl1_2766	-	hypothetical protein
2737	 44.00	0	3133581..3134471	-	296	152996780	-	Mmwyl1_2767	-	LysR family transcriptional regulator
2738	 39.34	-1	3134553..3135218	+	221	152996781	-	Mmwyl1_2768	-	lysine exporter protein LysE/YggA
2739	 48.67	+1	3135323..3136528	-	401	152996782	-	Mmwyl1_2769	-	major facilitator transporter
2740	 46.91	+1	3136639..3137625	+	328	152996783	-	Mmwyl1_2770	-	helix-turn-helix domain-containing protein
2741	 42.54	0	3137769..3138833	+	354	152996784	-	Mmwyl1_2771	-	ApbE family lipoprotein
2742	 42.88	0	3139210..3140769	+	519	152996785	-	Mmwyl1_2772	-	ABC transporter related
2743	 38.26	-1	3140827..3142449	-	540	152996786	-	Mmwyl1_2773	-	methyl-accepting chemotaxis sensory transducer
2744	 40.81	0	3143090..3143410	-	106	152996787	-	Mmwyl1_2774	-	hypothetical protein
2745	 43.48	0	3143472..3144161	-	229	152996788	-	Mmwyl1_2775	-	helix-turn-helix type 11 domain-containing protein
2746	 38.93	-1	3144309..3144719	-	136	152996789	-	Mmwyl1_2776	-	hypothetical protein
2747	 31.47	-2	3144946..3145320	-	124	152996790	-	Mmwyl1_2777	-	pentapeptide repeat-containing protein
2748	 45.75	0	3145568..3146743	-	391	152996791	-	Mmwyl1_2778	-	mannonate dehydratase
2749	 45.92	0	3146745..3148238	-	497	152996792	-	Mmwyl1_2779	-	mannitol dehydrogenase domain-containing protein
2750	 46.13	0	3148271..3149677	-	468	152996793	-	Mmwyl1_2780	-	glucuronate isomerase
2751	 44.88	0	3149692..3152091	-	799	152996794	-	Mmwyl1_2781	-	glycoside hydrolase family protein
2752	 43.57	0	3152137..3153435	-	432	152996795	-	Mmwyl1_2782	-	TRAP dicarboxylate transporter, DctM subunit
2753	 41.40	0	3153516..3153986	-	156	152996796	-	Mmwyl1_2783	-	tripartite ATP-independent periplasmic transporter DctQ
2754	 41.69	0	3154195..3155187	+	330	152996797	-	Mmwyl1_2784	-	TRAP dicarboxylate transporter, DctP subunit
2755	 40.80	0	3155323..3156099	+	258	152996798	-	Mmwyl1_2785	-	GntR domain-containing protein
2756	 41.85	0	3156298..3157788	+	496	152996799	-	Mmwyl1_2786	-	PAS/PAC sensor signal transduction histidine kinase
2757	 40.61	0	3157803..3158228	+	141	152996800	-	Mmwyl1_2787	-	response regulator receiver protein
2758	 40.95	0	3158242..3159960	+	572	152996801	-	Mmwyl1_2788	-	response regulator receiver modulated diguanylate cyclase/phosphodiesterase
2759	 44.16	0	3160228..3161511	+	427	152996802	-	Mmwyl1_2789	-	citrate carrier protein
2760	 39.05	-1	3161606..3163249	+	547	152996803	-	Mmwyl1_2790	-	signal transduction histidine kinase regulating citrate/malate metabolism
2761	 42.36	0	3163246..3163932	+	228	152996804	-	Mmwyl1_2791	-	response regulator receiver/unknown domain-containing protein
2762	 37.24	-1	3163936..3164370	+	144	152996805	-	Mmwyl1_2792	-	hypothetical protein
2763	 43.01	0	3164401..3164865	-	154	152996806	-	Mmwyl1_2793	-	hypothetical protein
2764	 42.57	0	3164962..3166185	-	407	152996807	-	Mmwyl1_2794	-	hypothetical protein
2765	 44.67	0	3166539..3167411	-	290	152996808	-	Mmwyl1_2796	-	succinyl-CoA synthetase, alpha subunit
2766	 44.04	0	3167414..3168580	-	388	152996809	-	Mmwyl1_2797	-	succinyl-CoA synthetase, beta subunit
2767	 42.85	0	3168668..3170107	-	479	152996810	-	Mmwyl1_2798	-	dihydrolipoamide dehydrogenase
2768	 46.17	0	3170193..3171719	-	508	152996811	-	Mmwyl1_2799	-	2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase
2769	 43.16	0	3171753..3174590	-	945	152996812	-	Mmwyl1_2800	-	2-oxoglutarate dehydrogenase, E1 subunit
2770	 43.83	0	3174966..3175670	-	234	152996813	-	Mmwyl1_2801	-	succinate dehydrogenase iron-sulfur subunit
2771	 45.06	0	3175683..3177455	-	590	152996814	-	Mmwyl1_2802	-	succinate dehydrogenase flavoprotein subunit
2772	 40.23	0	3177459..3177806	-	115	152996815	-	Mmwyl1_2803	-	succinate dehydrogenase hydrophobic membrane anchor
2773	 41.14	0	3177800..3178132	-	110	152996816	-	Mmwyl1_2804	-	succinate dehydrogenase cytochrome b556 subunit
2774	 42.99	0	3178749..3180032	+	427	152996817	-	Mmwyl1_2805	-	citrate synthase I
2775	 40.69	0	3180111..3180341	-	76	152996818	-	Mmwyl1_2806	-	hypothetical protein
2776	 41.07	0	3180342..3181427	-	361	152996819	-	Mmwyl1_2807	-	hypothetical protein
2777	 45.04	0	3181543..3182601	+	352	152996820	-	Mmwyl1_2808	-	phosphoribosylformylglycinamidine cyclo-ligase
2778	 40.21	0	3182598..3183251	+	217	152996821	-	Mmwyl1_2809	-	phosphoribosylglycinamide formyltransferase
2779	 37.38	-1	3183265..3184005	+	246	152996822	-	Mmwyl1_2810	-	hypothetical protein
2780	 42.01	0	3184032..3184607	-	191	152996823	-	Mmwyl1_2811	-	molybdopterin-guanine dinucleotide biosynthesis protein A
2781	 44.38	0	3184619..3185632	-	337	152996824	-	Mmwyl1_2812	-	glycosyl transferase family protein
2782	 45.52	0	3185629..3188328	-	899	152996825	-	Mmwyl1_2813	-	molybdopterin oxidoreductase
2783	 45.24	0	3188625..3188960	-	111	152996826	-	Mmwyl1_2814	-	nitrite reductase (NAD(P)H), small subunit
2784	 45.21	0	3188965..3191523	-	852	152996827	-	Mmwyl1_2815	-	nitrite reductase (NAD(P)H), large subunit
2785	 43.64	0	3191594..3192835	-	413	152996828	-	Mmwyl1_2816	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2786	 44.05	0	3192828..3193676	-	282	152996829	-	Mmwyl1_2817	-	nitrate ABC transporter, ATPase subunits C and D
2787	 43.11	0	3193718..3194689	-	323	152996830	-	Mmwyl1_2818	-	binding-protein-dependent transport systems inner membrane component
43.05	MEAN

3.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.