IslandPathversion 1.0

IslandPath Analysis: Marinomonas sp. MWYL1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.05 STD DEV: 3.35
Marinomonas sp. MWYL1, complete genome - 1..5100344
4439 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2554	 45.95	0	2924696..2924917	+	73	152996597	-	Mmwyl1_2583	-	transposase, IS4
2555	 40.74	0	2924956..2925792	-	278	152996598	-	Mmwyl1_2584	-	thioesterase
2556	 44.44	0	2925898..2926140	-	80	152996599	-	Mmwyl1_2585	-	putative transposase
2557	 38.59	-1	2926224..2926946	-	240	152996600	-	Mmwyl1_2586	-	integrase catalytic region
2558	 41.91	0	2927051..2927458	-	135	152996601	-	Mmwyl1_2587	-	transposase
2559	 45.51	0	2928683..2929027	+	114	152996602	-	Mmwyl1_2589	-	hypothetical protein
2560	 48.51	+1	2929327..2929629	-	100	152996603	-	Mmwyl1_2590	-	hypothetical protein
2561	 41.41	0	2932314..2932610	-	98	152996604	-	Mmwyl1_2591	-	integration host factor, alpha subunit
2562	 44.86	0	2932615..2934999	-	794	152996605	-	Mmwyl1_2592	-	phenylalanyl-tRNA synthetase, beta subunit
2563	 43.37	0	2935022..2936017	-	331	152996606	-	Mmwyl1_2593	-	phenylalanyl-tRNA synthetase, alpha subunit
2564	 46.22	0	2936147..2936503	-	118	152996607	-	Mmwyl1_2594	-	ribosomal protein L20
2565	 42.05	0	2936551..2936745	-	64	152996608	-	Mmwyl1_2595	-	50S ribosomal protein L35
2566	 45.88	0	2936839..2937372	-	177	152996609	-	Mmwyl1_2596	-	translation initiation factor IF-3
2567	 43.76	0	2937381..2939318	-	645	152996610	-	Mmwyl1_2597	-	threonyl-tRNA synthetase
2568	 43.06	0	2939557..2940183	+	208	152996611	-	Mmwyl1_2598	-	caffeoyl-CoA O-methyltransferase
2569	 41.45	0	2940278..2940979	+	233	152996612	-	Mmwyl1_2599	-	hypothetical protein
2570	 45.29	0	2941082..2942428	-	448	152996613	-	Mmwyl1_2600	-	phospho-2-dehydro-3-deoxyheptonate aldolase
2571	 43.30	0	2942472..2943083	-	203	152996614	-	Mmwyl1_2601	-	XRE family transcriptional regulator
2572	 43.12	0	2943124..2943552	-	142	152996615	-	Mmwyl1_2602	-	hypothetical protein
2573	 39.78	0	2943573..2943851	-	92	152996616	-	Mmwyl1_2603	-	PpiC-type peptidyl-prolyl cis-trans isomerase
2574	 41.23	0	2943992..2944789	+	265	152996617	-	Mmwyl1_2604	-	response regulator receiver protein
2575	 42.89	0	2944888..2945274	-	128	152996618	-	Mmwyl1_2605	-	mutator MutT protein
2576	 43.90	0	2945274..2946494	-	406	152996619	-	Mmwyl1_2606	-	arginine biosynthesis bifunctional protein ArgJ
2577	 41.81	0	2946510..2949212	-	900	152996620	-	Mmwyl1_2607	-	preprotein translocase, SecA subunit
2578	 41.39	0	2949356..2950273	-	305	152996621	-	Mmwyl1_2608	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
2579	 45.28	0	2950380..2951609	-	409	152996622	-	Mmwyl1_2609	-	cell division protein FtsZ
2580	 42.35	0	2951649..2952923	-	424	152996623	-	Mmwyl1_2610	-	cell division protein FtsA
2581	 44.35	0	2952999..2953679	-	226	152996624	-	Mmwyl1_2611	-	polypeptide-transport-associated domain-containing protein
2582	 44.03	0	2953683..2954636	-	317	152996625	-	Mmwyl1_2612	-	D-alanine--D-alanine ligase
2583	 43.53	0	2954638..2956059	-	473	152996626	-	Mmwyl1_2613	-	UDP-N-acetylmuramate--alanine ligase
2584	 43.76	0	2956056..2957129	-	357	152996627	-	Mmwyl1_2614	-	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
2585	 42.13	0	2957126..2958319	-	397	152996628	-	Mmwyl1_2615	-	cell division protein FtsW
2586	 44.81	0	2958316..2959665	-	449	152996629	-	Mmwyl1_2616	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
2587	 41.55	0	2959675..2960757	-	360	152996630	-	Mmwyl1_2617	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
2588	 41.13	0	2960772..2962118	-	448	152996631	-	Mmwyl1_2618	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
2589	 42.47	0	2962108..2963574	-	488	152996632	-	Mmwyl1_2619	-	UDP-N-acetylmuramyl-tripeptide synthetase
2590	 44.33	0	2963575..2965338	-	587	152996633	-	Mmwyl1_2620	-	peptidoglycan glycosyltransferase
2591	 39.78	0	2965335..2965613	-	92	152996634	-	Mmwyl1_2621	-	cell division protein FtsL
2592	 43.56	0	2965606..2966544	-	312	152996635	-	Mmwyl1_2622	-	S-adenosyl-methyltransferase MraW
2593	 43.42	0	2966541..2966996	-	151	152996636	-	Mmwyl1_2623	-	MraZ protein
2594	 43.35	0	2967749..2969056	-	435	152996637	-	Mmwyl1_2624	-	integral membrane sensor signal transduction histidine kinase
2595	 40.63	0	2969063..2969761	-	232	152996638	-	Mmwyl1_2625	-	two component transcriptional regulator
2596	 43.38	0	2969970..2971283	-	437	152996639	-	Mmwyl1_2626	-	adenylosuccinate synthase
2597	 44.19	0	2971307..2972485	-	392	152996640	-	Mmwyl1_2627	-	tRNA synthetase class II (G H P and S)
2598	 45.45	0	2972498..2972695	-	65	152996641	-	Mmwyl1_2628	-	hypothetical protein
2599	 41.95	0	2972811..2973692	-	293	152996642	-	Mmwyl1_2629	-	HflC protein
2600	 44.74	0	2973692..2974936	-	414	152996643	-	Mmwyl1_2630	-	HflK protein
2601	 44.19	0	2974977..2976266	-	429	152996644	-	Mmwyl1_2631	-	GTP-binding protein HSR1-related
2602	 37.80	-1	2976302..2976547	-	81	152996645	-	Mmwyl1_2632	-	RNA chaperone Hfq
2603	 44.59	0	2976637..2977569	-	310	152996646	-	Mmwyl1_2633	-	tRNA delta(2)-isopentenylpyrophosphate transferase
2604	 45.38	0	2977571..2979496	-	641	152996647	-	Mmwyl1_2634	-	DNA mismatch repair protein
2605	 42.44	0	2979555..2980883	-	442	152996648	-	Mmwyl1_2635	-	N-acetylmuramoyl-L-alanine amidase
2606	 46.32	0	2980978..2981439	-	153	152996649	-	Mmwyl1_2636	-	hypothetical protein
2607	 44.53	0	2981596..2982345	+	249	152996650	-	Mmwyl1_2637	-	hypothetical protein
2608	 40.68	0	2982440..2982997	-	185	152996651	-	Mmwyl1_2638	-	oligoribonuclease
2609	 43.77	0	2983072..2984106	+	344	152996652	-	Mmwyl1_2639	-	ribosome-associated GTPase
2610	 40.95	0	2984103..2985008	-	301	152996653	-	Mmwyl1_2640	-	OmpA/MotB domain-containing protein
2611	 42.46	0	2985045..2985899	-	284	152996654	-	Mmwyl1_2641	-	flagellar motor component
2612	 39.35	-1	2986021..2987499	+	492	152996655	-	Mmwyl1_2642	-	metal-dependent hydrolase HDOD
2613	 42.74	0	2987525..2988385	+	286	152996656	-	Mmwyl1_2643	-	phosphatidylserine decarboxylase
2614	 44.04	0	2988455..2989369	-	304	152996657	-	Mmwyl1_2644	-	protein-export membrane protein SecF
2615	 44.52	0	2989379..2991229	-	616	152996658	-	Mmwyl1_2645	-	preprotein translocase subunit SecD
2616	 42.51	0	2991308..2991634	-	108	152996659	-	Mmwyl1_2646	-	preprotein translocase, YajC subunit
2617	 43.98	0	2991707..2992852	-	381	152996660	-	Mmwyl1_2647	-	queuine tRNA-ribosyltransferase
2618	 44.44	0	2992858..2993919	-	353	152996661	-	Mmwyl1_2648	-	S-adenosylmethionine--tRNA-ribosyltransferase-isomerase
2619	 39.90	0	2994265..2994462	+	65	152996662	-	Mmwyl1_2649	-	hypothetical protein
2620	 42.28	0	2994459..2995274	-	271	152996663	-	Mmwyl1_2650	-	transcriptional regulator
2621	 45.10	0	2995511..2996938	+	475	152996664	-	Mmwyl1_2651	-	amino acid carrier protein
2622	 45.23	0	2996992..2998395	+	467	152996665	-	Mmwyl1_2652	-	aspartate ammonia-lyase
2623	 42.93	0	2998392..2999423	+	343	152996666	-	Mmwyl1_2653	-	asparaginase
2624	 42.66	0	2999493..2999846	-	117	152996667	-	Mmwyl1_2654	-	glyoxalase/bleomycin resistance protein/dioxygenase
2625	 41.89	0	2999854..3000741	-	295	152996668	-	Mmwyl1_2655	-	ribosomal protein L35
2626	 43.34	0	3000842..3001900	-	352	152996669	-	Mmwyl1_2656	-	2-nitropropane dioxygenase NPD
2627	 43.41	0	3001944..3002459	-	171	152996670	-	Mmwyl1_2657	-	NADPH-dependent FMN reductase
2628	 42.86	0	3002549..3002989	+	146	152996671	-	Mmwyl1_2658	-	GtrA family protein
2629	 43.75	0	3003047..3004054	-	335	152996672	-	Mmwyl1_2659	-	pirin domain-containing protein
2630	 38.94	-1	3004173..3005438	-	421	152996673	-	Mmwyl1_2660	-	integral membrane sensor signal transduction histidine kinase
2631	 39.21	-1	3005435..3006115	-	226	152996674	-	Mmwyl1_2661	-	two component transcriptional regulator
2632	 44.64	0	3006274..3007299	+	341	152996675	-	Mmwyl1_2662	-	glycosyl transferase family protein
2633	 41.23	0	3007299..3008729	+	476	152996676	-	Mmwyl1_2663	-	glycosyl transferase family protein
2634	 43.27	0	3008929..3010035	-	368	152996677	-	Mmwyl1_2664	-	AraC family transcriptional regulator
2635	 42.74	0	3010301..3011491	-	396	152996678	-	Mmwyl1_2665	-	oxidoreductase FAD-binding subunit
2636	 44.24	0	3011712..3012986	+	424	152996679	-	Mmwyl1_2666	-	Rieske (2Fe-2S) domain-containing protein
2637	 41.39	0	3013071..3013976	-	301	152996680	-	Mmwyl1_2667	-	LysR family transcriptional regulator
2638	 45.39	0	3014106..3015092	+	328	152996681	-	Mmwyl1_2668	-	oxidoreductase FAD-binding subunit
2639	 44.39	0	3015200..3016456	+	418	152996682	-	Mmwyl1_2669	-	Rieske (2Fe-2S) domain-containing protein
2640	 39.88	0	3016459..3016947	+	162	152996683	-	Mmwyl1_2670	-	aromatic-ring-hydroxylating dioxygenase beta subunit
2641	 40.63	0	3016983..3017297	+	104	152996684	-	Mmwyl1_2671	-	Rieske (2Fe-2S) domain-containing protein
2642	 42.89	0	3017387..3018349	+	320	152996685	-	Mmwyl1_2672	-	TRAP transporter solute receptor TAXI family protein
2643	 44.91	0	3018405..3020348	+	647	152996686	-	Mmwyl1_2673	-	TRAP transporter, 4TM/12TM fusion protein
2644	 42.68	0	3020358..3020999	+	213	152996687	-	Mmwyl1_2674	-	maleylacetoacetate isomerase
2645	 45.25	0	3021060..3022091	+	343	152996688	-	Mmwyl1_2675	-	cupin 2 domain-containing protein
2646	 43.12	0	3022136..3022840	+	234	152996689	-	Mmwyl1_2676	-	fumarylacetoacetate (FAA) hydrolase
2647	 42.15	0	3022905..3024242	-	445	152996690	-	Mmwyl1_2677	-	phosphatidylserine synthase
2648	 44.76	0	3024400..3025353	-	317	152996691	-	Mmwyl1_2678	-	LysR family transcriptional regulator
2649	 47.74	+1	3025484..3025726	+	80	152996692	-	Mmwyl1_2679	-	hypothetical protein
2650	 36.80	-1	3026052..3027896	+	614	152996693	-	Mmwyl1_2680	-	hypothetical protein
2651	 37.60	-1	3028201..3029115	-	304	152996694	-	Mmwyl1_2681	-	hypothetical protein
2652	 46.03	0	3029761..3030666	-	301	152996695	-	Mmwyl1_2682	-	LysR family transcriptional regulator
2653	 44.23	0	3030813..3031739	+	308	152996696	-	Mmwyl1_2683	-	dihydrodipicolinate synthetase
43.05	MEAN

3.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.