IslandPathversion 1.0

IslandPath Analysis: Marinomonas sp. MWYL1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.05 STD DEV: 3.35
Marinomonas sp. MWYL1, complete genome - 1..5100344
4439 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2457	 43.17	0	2789401..2790234	-	277	152996500	-	Mmwyl1_2479	-	alpha/beta hydrolase fold
2458	 44.83	0	2790206..2790805	-	199	152996501	-	Mmwyl1_2480	-	hypothetical protein
2459	 41.67	0	2790947..2791606	+	219	152996502	-	Mmwyl1_2481	-	GntR family transcriptional regulator
2460	 44.36	0	2791606..2791986	+	126	152996503	-	Mmwyl1_2482	-	carboxymuconolactone decarboxylase
2461	 42.52	0	2792014..2792307	+	97	152996504	-	Mmwyl1_2483	-	hypothetical protein
2462	 45.29	0	2792638..2793657	+	339	152996505	-	Mmwyl1_2484	-	extracellular solute-binding protein
2463	 43.78	0	2793737..2794588	+	283	152996506	-	Mmwyl1_2485	-	binding-protein-dependent transport systems inner membrane component
2464	 44.98	0	2794591..2795397	+	268	152996507	-	Mmwyl1_2486	-	binding-protein-dependent transport systems inner membrane component
2465	 42.89	0	2795408..2796547	+	379	152996508	-	Mmwyl1_2487	-	ABC transporter related
2466	 35.96	-2	2796855..2797121	+	88	152996509	-	Mmwyl1_2488	-	hypothetical protein
2467	 37.99	-1	2797125..2797682	+	185	152996510	-	Mmwyl1_2489	-	putative DNA-binding protein
2468	 46.39	0	2798103..2798393	-	96	152996511	-	Mmwyl1_2491	-	XRE family plasmid maintenance system antidote protein
2469	 33.33	-2	2798399..2798476	-	25	152996512	-	Mmwyl1_2492	-	plasmid maintenance system killer
2470	 44.64	0	2798521..2799024	-	167	152996513	-	Mmwyl1_2493	-	GCN5-related N-acetyltransferase
2471	 42.81	0	2798993..2799298	-	101	152996514	-	Mmwyl1_2494	-	hypothetical protein
2472	 49.62	+1	2799755..2800681	-	308	152996515	-	Mmwyl1_2496	-	helix-turn-helix domain-containing protein
2473	 48.15	+1	2800760..2801866	+	368	152996516	-	Mmwyl1_2497	-	alcohol dehydrogenase
2474	 58.09	+2	2802075..2802482	-	135	152996517	-	Mmwyl1_2498	-	hypothetical protein
2475	 53.81	+2	2802473..2802682	-	69	152996518	-	Mmwyl1_2499	-	phage tail X family protein
2476	 55.98	+2	2802666..2803058	-	130	152996519	-	Mmwyl1_2500	-	phage P2 GpU family protein
2477	 32.65	-2	2803144..2803875	-	243	152996520	-	Mmwyl1_2501	-	peptidylprolyl isomerase FKBP-type
2478	 47.43	+1	2804298..2804900	-	200	152996521	-	Mmwyl1_2502	-	Rha family phage regulatory protein
2479	 31.63	-2	2805184..2805828	-	214	152996522	-	Mmwyl1_2503	-	hypothetical protein
2480	 32.02	-2	2805821..2806351	-	176	152996523	-	Mmwyl1_2504	-	hypothetical protein
2481	 31.61	-2	2806721..2808697	-	658	152996524	-	Mmwyl1_2505	-	hypothetical protein
2482	 57.82	+2	2809365..2810381	-	338	152996525	-	Mmwyl1_2506	-	phage late control D family protein
2483	 52.38	+2	2810372..2810581	-	69	152996526	-	Mmwyl1_2507	-	phage tail X family protein
2484	 55.98	+2	2810565..2810957	-	130	152996527	-	Mmwyl1_2508	-	phage P2 GpU family protein
2485	 29.67	-2	2811181..2812107	-	308	152996528	-	Mmwyl1_2509	-	hypothetical protein
2486	 47.12	+1	2812257..2812880	-	207	152996529	-	Mmwyl1_2510	-	Rha family phage regulatory protein
2487	 40.53	0	2813221..2813484	+	87	152996530	-	Mmwyl1_2511	-	hypothetical protein
2488	 38.66	-1	2813502..2814008	+	168	152996531	-	Mmwyl1_2512	-	hypothetical protein
2489	 46.10	0	2814301..2815326	+	341	152996532	-	Mmwyl1_2513	-	tRNA-dihydrouridine synthase A
2490	 44.48	0	2815332..2816282	+	316	152996533	-	Mmwyl1_2514	-	transaldolase B
2491	 47.08	+1	2816371..2816901	+	176	152996534	-	Mmwyl1_2515	-	hexapaptide repeat-containing transferase
2492	 43.11	0	2817110..2818234	+	374	152996535	-	Mmwyl1_2516	-	glucose sorbosone dehydrogenase
2493	 41.61	0	2818338..2819243	-	301	152996536	-	Mmwyl1_2517	-	diguanylate cyclase
2494	 43.32	0	2819378..2820268	-	296	152996537	-	Mmwyl1_2518	-	VacJ family lipoprotein
2495	 44.41	0	2820334..2824260	-	1308	152996538	-	Mmwyl1_2519	-	ATP-dependent helicase HrpA
2496	 45.42	0	2824414..2825439	+	341	152996539	-	Mmwyl1_2520	-	cysteine synthase A
2497	 40.96	0	2825535..2825783	-	82	152996540	-	Mmwyl1_2521	-	hypothetical protein
2498	 37.17	-1	2825897..2826496	-	199	152996541	-	Mmwyl1_2522	-	methyltransferase type 11
2499	 39.25	-1	2826587..2826958	-	123	152996542	-	Mmwyl1_2523	-	hypothetical protein
2500	 39.53	-1	2827279..2827794	-	171	152996543	-	Mmwyl1_2524	-	hypothetical protein
2501	 36.98	-1	2827978..2828553	-	191	152996544	-	Mmwyl1_2525	-	NAD(P)H dehydrogenase (quinone)
2502	 36.49	-1	2828613..2828960	-	115	152996545	-	Mmwyl1_2526	-	MerR family transcriptional regulator
2503	 44.83	0	2829143..2829925	-	260	152996546	-	Mmwyl1_2527	-	glutamine amidotransferase class-II
2504	 43.61	0	2829918..2831786	-	622	152996547	-	Mmwyl1_2528	-	von Willebrand factor type A
2505	 40.62	0	2831857..2832336	-	159	152996548	-	Mmwyl1_2529	-	hypothetical protein
2506	 38.78	-1	2832354..2832647	-	97	152996549	-	Mmwyl1_2530	-	hypothetical protein
2507	 43.29	0	2832694..2833848	-	384	152996550	-	Mmwyl1_2531	-	ribonuclease D
2508	 44.61	0	2833850..2834443	-	197	152996551	-	Mmwyl1_2532	-	recombination protein RecR
2509	 44.34	0	2834453..2834779	-	108	152996552	-	Mmwyl1_2533	-	hypothetical protein
2510	 45.91	0	2834797..2837055	-	752	152996553	-	Mmwyl1_2534	-	DNA polymerase III, subunits gamma and tau
2511	 44.08	0	2837262..2838257	-	331	152996554	-	Mmwyl1_2535	-	rhodanese domain-containing protein
2512	 42.42	0	2838324..2839016	-	230	152996555	-	Mmwyl1_2536	-	2OG-Fe(II) oxygenase
2513	 43.16	0	2839137..2840897	+	586	152996556	-	Mmwyl1_2537	-	type III restriction protein res subunit
2514	 41.50	0	2840903..2841490	-	195	152996557	-	Mmwyl1_2538	-	TetR family transcriptional regulator
2515	 41.57	0	2841573..2842337	-	254	152996558	-	Mmwyl1_2539	-	hypothetical protein
2516	 44.02	0	2842636..2843346	+	236	152996559	-	Mmwyl1_2540	-	DTW domain-containing protein
2517	 40.17	0	2843404..2843886	-	160	152996560	-	Mmwyl1_2541	-	hypothetical protein
2518	 41.09	0	2844393..2845037	+	214	152996561	-	Mmwyl1_2542	-	HAD family hydrolase
2519	 42.76	0	2845087..2846115	-	342	152996562	-	Mmwyl1_2543	-	37kDa nucleoid-associated protein
2520	 43.40	0	2846202..2846519	+	105	152996563	-	Mmwyl1_2544	-	hypothetical protein
2521	 42.32	0	2846630..2847052	+	140	152996564	-	Mmwyl1_2545	-	glyoxalase/bleomycin resistance protein/dioxygenase
2522	 45.40	0	2847172..2847801	+	209	152996565	-	Mmwyl1_2546	-	OmpA/MotB domain-containing protein
2523	 49.36	+1	2847982..2848842	+	286	152996566	-	Mmwyl1_2547	-	3-hydroxyisobutyrate dehydrogenase
2524	 38.87	-1	2848949..2849707	-	252	152996567	-	Mmwyl1_2548	-	DeoR family transcriptional regulator
2525	 46.40	0	2849988..2850890	+	300	152996568	-	Mmwyl1_2549	-	2-hydroxy-3-oxopropionate reductase
2526	 44.02	0	2850892..2852145	+	417	152996569	-	Mmwyl1_2550	-	type III effector Hrp-dependent outers
2527	 42.97	0	2852145..2852777	+	210	152996570	-	Mmwyl1_2551	-	putative aldolase
2528	 41.31	0	2852777..2853553	+	258	152996571	-	Mmwyl1_2552	-	hydroxypyruvate isomerase
2529	 36.39	-1	2853587..2854534	+	315	152996572	-	Mmwyl1_2553	-	3-beta hydroxysteroid dehydrogenase/isomerase
2530	 41.82	0	2854571..2856055	+	494	152996573	-	Mmwyl1_2554	-	gluconate transporter
2531	 43.49	0	2856110..2857300	-	396	152996574	-	Mmwyl1_2555	-	hypothetical protein
2532	 38.63	-1	2857623..2858207	+	194	152996575	-	Mmwyl1_2556	-	hypothetical protein
2533	 42.44	0	2858310..2859605	+	431	152996576	-	Mmwyl1_2557	-	putative iron-regulated protein
2534	 42.25	0	2859697..2861076	+	459	152996577	-	Mmwyl1_2558	-	hypothetical protein
2535	 44.00	0	2861076..2862134	+	352	152996578	-	Mmwyl1_2559	-	periplasmic lipoprotein-like protein
2536	 42.01	0	2862140..2863246	+	368	152996579	-	Mmwyl1_2560	-	hypothetical protein
2537	 38.95	-1	2863358..2865601	+	747	152996580	-	Mmwyl1_2561	-	diguanylate cyclase/phosphodiesterase
2538	 43.49	0	2865703..2866992	-	429	152996581	-	Mmwyl1_2562	-	membrane protein involved in aromatic hydrocarbon degradation
2539	 48.57	+1	2868770..2869642	-	290	152996582	-	Mmwyl1_2563	-	integrase catalytic region
2540	 50.72	+2	2869956..2870162	+	68	152996583	-	Mmwyl1_2565	-	putative transposase subunit
2541	 54.36	+2	2870227..2870421	-	64	152996584	-	Mmwyl1_2566	-	putative transposase
2542	 38.01	-1	2871321..2874572	-	1083	152996585	-	Mmwyl1_2568	-	amino acid adenylation domain-containing protein
2543	 44.04	0	2874586..2883501	-	2971	152996586	-	Mmwyl1_2569	-	amino acid adenylation domain-containing protein
2544	 37.83	-1	2883535..2892879	-	3114	152996587	-	Mmwyl1_2570	-	amino acid adenylation domain-containing protein
2545	 38.46	-1	2892999..2894657	-	552	152996588	-	Mmwyl1_2571	-	cyclic peptide transporter
2546	 38.76	-1	2894664..2895455	-	263	152996589	-	Mmwyl1_2572	-	SMC domain-containing protein
2547	 37.85	-1	2895455..2899399	-	1314	152996590	-	Mmwyl1_2573	-	AMP-dependent synthetase and ligase
2548	 45.81	0	2899407..2918621	-	6404	152996591	-	Mmwyl1_2574	-	amino acid adenylation domain-containing protein
2549	 48.57	+1	2918927..2919799	-	290	152996592	-	Mmwyl1_2575	-	integrase catalytic region
2550	 45.21	0	2920133..2920393	+	86	152996593	-	Mmwyl1_2577	-	IS630 orf
2551	 34.98	-2	2920529..2921257	-	242	152996594	-	Mmwyl1_2578	-	4'-phosphopantetheinyl transferase
2552	 56.98	+2	2923051..2923308	+	85	152996595	-	Mmwyl1_2580	-	hypothetical protein
2553	 50.86	+2	2924064..2924645	+	193	152996596	-	Mmwyl1_2582	-	transposase IS4 family protein
2554	 45.95	0	2924696..2924917	+	73	152996597	-	Mmwyl1_2583	-	transposase, IS4
2555	 40.74	0	2924956..2925792	-	278	152996598	-	Mmwyl1_2584	-	thioesterase
2556	 44.44	0	2925898..2926140	-	80	152996599	-	Mmwyl1_2585	-	putative transposase
43.05	MEAN

3.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.