IslandPathversion 1.0

IslandPath Analysis: Marinomonas sp. MWYL1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.05 STD DEV: 3.35
Marinomonas sp. MWYL1, complete genome - 1..5100344
4439 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2244	 41.95	0	2546224..2547024	-	266	152996287	-	Mmwyl1_2265	-	TatD family hydrolase
2245	 41.64	0	2547032..2547970	-	312	152996288	-	Mmwyl1_2266	-	DNA polymerase III, delta prime subunit
2246	 44.29	0	2547971..2548609	-	212	152996289	-	Mmwyl1_2267	-	dTMP kinase
2247	 39.53	-1	2548621..2549652	-	343	152996290	-	Mmwyl1_2268	-	aminodeoxychorismate lyase
2248	 39.49	-1	2549639..2550466	-	275	152996291	-	Mmwyl1_2269	-	aminotransferase class IV
2249	 39.47	-1	2552249..2552818	+	189	152996292	-	Mmwyl1_2270	-	hypothetical protein
2250	 44.31	0	2553056..2554276	+	406	152996293	-	Mmwyl1_2271	-	aminotransferase AlaT
2251	 44.03	0	2554343..2555221	+	292	152996294	-	Mmwyl1_2272	-	HtpX domain-containing protein
2252	 38.53	-1	2555327..2555557	-	76	152996295	-	Mmwyl1_2273	-	hypothetical protein
2253	 45.14	0	2555640..2558510	-	956	152996296	-	Mmwyl1_2274	-	formate dehydrogenase, alpha subunit
2254	 45.95	0	2558513..2560081	-	522	152996297	-	Mmwyl1_2275	-	NADH dehydrogenase (quinone)
2255	 43.37	0	2560081..2560578	-	165	152996298	-	Mmwyl1_2276	-	formate dehydrogenase subunit gamma
2256	 44.95	0	2561104..2562678	+	524	152996299	-	Mmwyl1_2277	-	NAD(P) transhydrogenase subunit alpha
2257	 43.47	0	2562689..2564089	+	466	152996300	-	Mmwyl1_2278	-	NAD(P)(+) transhydrogenase (AB-specific)
2258	 39.70	0	2564159..2564881	-	240	152996301	-	Mmwyl1_2279	-	hypothetical protein
2259	 39.90	0	2564898..2566040	-	380	152996302	-	Mmwyl1_2280	-	D-isomer specific 2-hydroxyacid dehydrogenase catalytic region
2260	 44.26	0	2566021..2566560	-	179	152996303	-	Mmwyl1_2281	-	hypothetical protein
2261	 43.60	0	2566711..2567811	-	366	152996304	-	Mmwyl1_2282	-	glycine cleavage system T protein
2262	 45.23	0	2568181..2569458	+	425	152996305	-	Mmwyl1_2283	-	glycine hydroxymethyltransferase
2263	 45.83	0	2569516..2569899	+	127	152996306	-	Mmwyl1_2284	-	glycine cleavage system H protein
2264	 46.11	0	2569976..2572840	+	954	152996307	-	Mmwyl1_2285	-	glycine dehydrogenase
2265	 41.89	0	2573008..2573919	-	303	152996308	-	Mmwyl1_2286	-	LysR family transcriptional regulator
2266	 40.12	0	2574001..2575164	+	387	152996309	-	Mmwyl1_2287	-	major facilitator transporter
2267	 35.00	-2	2575304..2576380	+	358	152996310	-	Mmwyl1_2288	-	diguanylate cyclase
2268	 46.58	+1	2576471..2578048	-	525	152996311	-	Mmwyl1_2289	-	aldehyde dehydrogenase
2269	 40.36	0	2578091..2579257	-	388	152996312	-	Mmwyl1_2290	-	iron-containing alcohol dehydrogenase
2270	 37.68	-1	2579325..2580590	-	421	152996313	-	Mmwyl1_2291	-	TRAP dicarboxylate transporter, DctM subunit
2271	 35.05	-2	2580587..2581168	-	193	152996314	-	Mmwyl1_2292	-	tripartite ATP-independent periplasmic transporter DctQ
2272	 36.97	-1	2581326..2582342	-	338	152996315	-	Mmwyl1_2293	-	TRAP dicarboxylate transporter, DctP subunit
2273	 38.56	-1	2582927..2583883	-	318	152996316	-	Mmwyl1_2294	-	LysR family transcriptional regulator
2274	 45.07	0	2584096..2584845	-	249	152996317	-	Mmwyl1_2295	-	hypothetical protein
2275	 39.25	-1	2584891..2585397	-	168	152996318	-	Mmwyl1_2296	-	hypothetical protein
2276	 43.99	0	2585748..2587643	+	631	152996319	-	Mmwyl1_2297	-	phosphatase-like protein
2277	 40.06	0	2587741..2588379	-	212	152996320	-	Mmwyl1_2298	-	threonyl/alanyl tRNA synthetase SAD
2278	 40.58	0	2588443..2589063	-	206	152996321	-	Mmwyl1_2299	-	lysine exporter protein LysE/YggA
2279	 38.91	-1	2589191..2590015	+	274	152996322	-	Mmwyl1_2300	-	AraC family transcriptional regulator
2280	 39.65	-1	2590192..2592090	+	632	152996323	-	Mmwyl1_2301	-	methyl-accepting chemotaxis sensory transducer
2281	 43.76	0	2592181..2593647	-	488	152996324	-	Mmwyl1_2302	-	anion transporter
2282	 43.52	0	2593834..2594805	-	323	152996325	-	Mmwyl1_2303	-	RluA family pseudouridine synthase
2283	 44.87	0	2595279..2598494	+	1071	152996326	-	Mmwyl1_2304	-	ribonuclease
2284	 44.36	0	2598620..2600269	+	549	152996327	-	Mmwyl1_2305	-	sulphate transporter
2285	 44.86	0	2600354..2602288	-	644	152996328	-	Mmwyl1_2306	-	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
2286	 43.83	0	2602385..2605051	-	888	152996329	-	Mmwyl1_2307	-	pyruvate dehydrogenase subunit E1
2287	 41.58	0	2606033..2606881	+	282	152996330	-	Mmwyl1_2308	-	nicotinate-nucleotide pyrophosphorylase
2288	 40.89	0	2606884..2608074	+	396	152996331	-	Mmwyl1_2309	-	acetate kinase
2289	 45.19	0	2608121..2610220	+	699	152996332	-	Mmwyl1_2310	-	phosphate acetyltransferase
2290	 40.80	0	2610379..2610753	+	124	152996333	-	Mmwyl1_2311	-	hypothetical protein
2291	 38.63	-1	2610825..2611277	+	150	152996334	-	Mmwyl1_2312	-	hypothetical protein
2292	 41.85	0	2611274..2612224	+	316	152996335	-	Mmwyl1_2313	-	type II secretion system protein E
2293	 40.00	0	2612211..2613275	+	354	152996336	-	Mmwyl1_2314	-	type II secretion system protein
2294	 37.79	-1	2613276..2614061	+	261	152996337	-	Mmwyl1_2315	-	peptidase A24A domain-containing protein
2295	 38.89	-1	2614065..2614676	+	203	152996338	-	Mmwyl1_2316	-	dephospho-CoA kinase
2296	 42.67	0	2614670..2614894	+	74	152996339	-	Mmwyl1_2317	-	hypothetical protein
2297	 37.21	-1	2614921..2616132	+	403	152996340	-	Mmwyl1_2318	-	response regulator receiver protein
2298	 38.30	-1	2616135..2616818	+	227	152996341	-	Mmwyl1_2319	-	histidine kinase
2299	 38.30	-1	2616835..2617458	-	207	152996342	-	Mmwyl1_2320	-	GntR family transcriptional regulator
2300	 44.42	0	2617470..2618642	-	390	152996343	-	Mmwyl1_2321	-	benzoate transporter
2301	 44.54	0	2618716..2619429	-	237	152996344	-	Mmwyl1_2322	-	ZIP zinc transporter family protein
2302	 41.86	0	2619554..2620327	-	257	152996345	-	Mmwyl1_2323	-	ectoine/hydroxyectoine ABC transporter ATP-binding protein
2303	 42.18	0	2620324..2621001	-	225	152996346	-	Mmwyl1_2324	-	ectoine/hydroxyectoine ABC transporter permease protein EhuD
2304	 41.63	0	2620998..2621660	-	220	152996347	-	Mmwyl1_2325	-	ectoine/hydroxyectoine ABC transporter permease protein EhuC
2305	 42.76	0	2621679..2622527	-	282	152996348	-	Mmwyl1_2326	-	ectoine/hydroxyectoine ABC transporter solute-binding protein
2306	 39.53	-1	2622829..2624232	-	467	152996349	-	Mmwyl1_2327	-	histidine kinase
2307	 42.40	0	2624207..2624890	-	227	152996350	-	Mmwyl1_2328	-	two component transcriptional regulator
2308	 41.02	0	2624887..2626707	-	606	152996351	-	Mmwyl1_2329	-	cytochrome c biogenesis protein transmembrane region
2309	 41.89	0	2626851..2627399	+	182	152996352	-	Mmwyl1_2330	-	redoxin domain-containing protein
2310	 42.67	0	2627403..2627627	+	74	152996353	-	Mmwyl1_2331	-	putative lipoprotein
2311	 40.67	0	2627614..2628921	+	435	152996354	-	Mmwyl1_2332	-	hypothetical protein
2312	 40.94	0	2628978..2629937	+	319	152996355	-	Mmwyl1_2333	-	ApbE family lipoprotein
2313	 44.53	0	2635920..2637437	-	505	152996356	-	Mmwyl1_2334	-	tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit
2314	 40.21	0	2637601..2639301	-	566	152996357	-	Mmwyl1_2335	-	hypothetical protein
2315	 42.34	0	2639365..2639808	-	147	152996358	-	Mmwyl1_2336	-	histidine triad (HIT) protein
2316	 44.14	0	2639894..2640763	+	289	152996359	-	Mmwyl1_2337	-	SMP-30/gluconolaconase/LRE domain-containing protein
2317	 45.62	0	2640835..2642559	+	574	152996360	-	Mmwyl1_2338	-	prolyl-tRNA synthetase
2318	 40.00	0	2642641..2642985	+	114	152996361	-	Mmwyl1_2339	-	arsenate reductase
2319	 45.61	0	2643014..2643616	+	200	152996362	-	Mmwyl1_2340	-	flavodoxin/nitric oxide synthase
2320	 42.76	0	2643738..2644745	-	335	152996363	-	Mmwyl1_2341	-	transcriptional regulator CysB
2321	 43.31	0	2644821..2645582	+	253	152996364	-	Mmwyl1_2342	-	hypothetical protein
2322	 44.01	0	2645679..2646755	+	358	152996365	-	Mmwyl1_2343	-	phospho-2-dehydro-3-deoxyheptonate aldolase
2323	 40.03	0	2646845..2647426	-	193	152996366	-	Mmwyl1_2344	-	HesB/YadR/YfhF-family protein
2324	 44.28	0	2647677..2649338	+	553	152996367	-	Mmwyl1_2345	-	sulfite reductase (ferredoxin)
2325	 43.40	0	2649322..2649798	+	158	152996368	-	Mmwyl1_2346	-	hypothetical protein
2326	 42.15	0	2649922..2650590	+	222	152996369	-	Mmwyl1_2347	-	hypothetical protein
2327	 40.77	0	2650641..2651810	+	389	152996370	-	Mmwyl1_2348	-	sodium/hydrogen exchanger
2328	 43.52	0	2651995..2654085	+	696	152996371	-	Mmwyl1_2349	-	elongation factor G
2329	 42.17	0	2654230..2655282	-	350	152996372	-	Mmwyl1_2350	-	aldo/keto reductase
2330	 42.64	0	2655427..2656608	-	393	152996373	-	Mmwyl1_2351	-	di-haem cytochrome c peroxidase
2331	 39.53	-1	2656776..2657033	-	85	152996374	-	Mmwyl1_2352	-	cell division topological specificity factor MinE
2332	 43.88	0	2657035..2657868	-	277	152996375	-	Mmwyl1_2353	-	septum site-determining protein MinD
2333	 42.15	0	2657906..2658631	-	241	152996376	-	Mmwyl1_2354	-	septum site-determining protein MinC
2334	 44.07	0	2658939..2662682	-	1247	152996377	-	Mmwyl1_2355	-	SMC domain-containing protein
2335	 45.46	0	2662679..2663956	-	425	152996378	-	Mmwyl1_2356	-	exonuclease subunit SbcD
2336	 45.38	0	2664007..2664861	-	284	152996379	-	Mmwyl1_2357	-	ferredoxin
2337	 36.78	-1	2665056..2665316	-	86	152996380	-	Mmwyl1_2358	-	hypothetical protein
2338	 47.60	+1	2665635..2666468	-	277	152996381	-	Mmwyl1_2359	-	short chain dehydrogenase
2339	 46.20	0	2666590..2667522	+	310	152996382	-	Mmwyl1_2360	-	AraC-like transcriptional regulator
2340	 48.34	+1	2667679..2669151	-	490	152996383	-	Mmwyl1_2361	-	aminoacyl-histidine dipeptidase
2341	 43.91	0	2669378..2671060	+	560	152996384	-	Mmwyl1_2362	-	Pectate lyase
2342	 44.32	0	2671208..2672581	-	457	152996385	-	Mmwyl1_2363	-	pyridine nucleotide-disulphide oxidoreductase dimerisation region
2343	 40.22	0	2672792..2673415	-	207	152996386	-	Mmwyl1_2364	-	hypothetical protein
43.05	MEAN

3.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.