IslandPathversion 1.0

IslandPath Analysis: Marinomonas sp. MWYL1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.05 STD DEV: 3.35
Marinomonas sp. MWYL1, complete genome - 1..5100344
4439 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1808	 44.31	0	2054933..2055415	+	160	152995851	-	Mmwyl1_1827	-	aromatic-ring-hydroxylating dioxygenase beta subunit
1809	 47.75	+1	2055449..2056204	+	251	152995852	-	Mmwyl1_1828	-	short-chain dehydrogenase/reductase SDR
1810	 44.08	0	2056240..2057244	+	334	152995853	-	Mmwyl1_1829	-	ferredoxin
1811	 43.65	0	2057274..2057777	+	167	152995854	-	Mmwyl1_1830	-	flavin reductase domain-containing protein
1812	 46.29	0	2057839..2059011	+	390	152995855	-	Mmwyl1_1831	-	L-lactate dehydrogenase (cytochrome)
1813	 47.60	+1	2059039..2060328	+	429	152995856	-	Mmwyl1_1832	-	amidase
1814	 32.24	-2	2060578..2061402	+	274	152995857	-	Mmwyl1_1833	-	helix-turn-helix domain-containing protein
1815	 44.68	0	2061448..2062857	-	469	152995858	-	Mmwyl1_1834	-	aldehyde dehydrogenase
1816	 34.53	-2	2062996..2063829	-	277	152995859	-	Mmwyl1_1835	-	helix-turn-helix domain-containing protein
1817	 35.46	-2	2063900..2064979	-	359	152995860	-	Mmwyl1_1836	-	methyl-accepting chemotaxis sensory transducer
1818	 44.13	0	2065057..2066436	-	459	152995861	-	Mmwyl1_1837	-	amino acid permease-associated region
1819	 45.40	0	2066469..2067761	-	430	152995862	-	Mmwyl1_1838	-	FAD dependent oxidoreductase
1820	 40.19	0	2067783..2068205	-	140	152995863	-	Mmwyl1_1839	-	endoribonuclease L-PSP
1821	 44.39	0	2068265..2069404	-	379	152995864	-	Mmwyl1_1840	-	ornithine cyclodeaminase
1822	 44.49	0	2069707..2071185	-	492	152995865	-	Mmwyl1_1841	-	RimK domain-containing protein ATP-grasp
1823	 46.68	+1	2071700..2072845	+	381	152995866	-	Mmwyl1_1842	-	GCN5-related N-acetyltransferase
1824	 40.20	0	2072992..2073588	+	198	152995867	-	Mmwyl1_1843	-	GCN5-related N-acetyltransferase
1825	 45.79	0	2073703..2074770	+	355	152995868	-	Mmwyl1_1844	-	threonine aldolase
1826	 45.05	0	2074971..2075909	+	312	152995869	-	Mmwyl1_1845	-	band 7 protein
1827	 42.21	0	2075912..2076373	+	153	152995870	-	Mmwyl1_1846	-	hypothetical protein
1828	 41.89	0	2076518..2076739	+	73	152995871	-	Mmwyl1_1847	-	hypothetical protein
1829	 37.07	-1	2076741..2077034	+	97	152995872	-	Mmwyl1_1848	-	hypothetical protein
1830	 46.45	+1	2077031..2078257	-	408	152995873	-	Mmwyl1_1849	-	major facilitator transporter
1831	 46.83	+1	2078311..2079318	-	335	152995874	-	Mmwyl1_1850	-	glyceraldehyde-3-phosphate dehydrogenase, type I
1832	 44.93	0	2079354..2079698	-	114	152995875	-	Mmwyl1_1851	-	regulatory protein ArsR
1833	 48.24	+1	2079916..2080767	-	283	152995876	-	Mmwyl1_1852	-	UspA domain-containing protein
1834	 44.47	0	2080799..2082289	-	496	152995877	-	Mmwyl1_1853	-	sulphate transporter
1835	 43.16	0	2082694..2098209	+	5171	152995878	-	Mmwyl1_1854	-	hemolysin-type calcium-binding region
1836	 46.82	+1	2098320..2098979	-	219	152995879	-	Mmwyl1_1855	-	peptide methionine sulfoxide reductase
1837	 42.27	0	2100712..2101740	-	342	152995880	-	Mmwyl1_1856	-	periplasmic binding protein/LacI transcriptional regulator
1838	 43.24	0	2101933..2102901	-	322	152995881	-	Mmwyl1_1857	-	periplasmic binding protein/LacI transcriptional regulator
1839	 45.44	0	2103006..2103980	-	324	152995882	-	Mmwyl1_1858	-	monosaccharide-transporting ATPase
1840	 42.87	0	2104080..2105579	-	499	152995883	-	Mmwyl1_1859	-	ABC transporter related
1841	 45.32	0	2105592..2106776	-	394	152995884	-	Mmwyl1_1860	-	oxidoreductase domain-containing protein
1842	 45.74	0	2106789..2107844	-	351	152995885	-	Mmwyl1_1861	-	xylose isomerase domain-containing protein
1843	 43.86	0	2108101..2109363	-	420	152995886	-	Mmwyl1_1862	-	hypothetical protein
1844	 35.41	-2	2109745..2110851	+	368	152995887	-	Mmwyl1_1863	-	diguanylate cyclase
1845	 38.59	-1	2110920..2111414	+	164	152995888	-	Mmwyl1_1864	-	small integral membrane protein
1846	 43.81	0	2111610..2112611	+	333	152995889	-	Mmwyl1_1865	-	D-xylose transporter subunit XylF
1847	 44.44	0	2112669..2114198	+	509	152995890	-	Mmwyl1_1866	-	D-xylose ABC transporter, ATPase subunit
1848	 47.48	+1	2114191..2115321	+	376	152995891	-	Mmwyl1_1867	-	monosaccharide-transporting ATPase
1849	 47.20	+1	2115360..2116808	+	482	152995892	-	Mmwyl1_1868	-	xylulokinase
1850	 44.16	0	2116969..2118150	+	393	152995893	-	Mmwyl1_1869	-	helix-turn-helix domain-containing protein
1851	 44.87	0	2118385..2119398	+	337	152995894	-	Mmwyl1_1870	-	periplasmic binding protein/LacI transcriptional regulator
1852	 43.07	0	2119738..2120682	+	314	152995895	-	Mmwyl1_1871	-	periplasmic binding protein/LacI transcriptional regulator
1853	 43.41	0	2120736..2121350	+	204	152995896	-	Mmwyl1_1872	-	putative lipoprotein
1854	 45.23	0	2121350..2122870	+	506	152995897	-	Mmwyl1_1873	-	ABC transporter related
1855	 45.73	0	2122872..2123936	+	354	152995898	-	Mmwyl1_1874	-	monosaccharide-transporting ATPase
1856	 44.90	0	2123981..2124421	+	146	152995899	-	Mmwyl1_1875	-	RbsD or FucU transport
1857	 45.98	0	2124544..2125863	-	439	152995900	-	Mmwyl1_1876	-	xylose isomerase
1858	 46.33	0	2126034..2126756	-	240	152995901	-	Mmwyl1_1877	-	hypothetical protein
1859	 41.15	0	2127019..2127504	+	161	152995902	-	Mmwyl1_1878	-	GCN5-related N-acetyltransferase
1860	 44.18	0	2127579..2129339	-	586	152995903	-	Mmwyl1_1879	-	TRAP transporter, 4TM/12TM fusion protein
1861	 40.78	0	2129504..2130457	-	317	152995904	-	Mmwyl1_1880	-	TRAP transporter solute receptor TAXI family protein
1862	 44.70	0	2130674..2133418	-	914	152995905	-	Mmwyl1_1881	-	aconitate hydratase 1
1863	 34.63	-2	2133817..2134125	+	102	152995906	-	Mmwyl1_1882	-	hypothetical protein
1864	 35.02	-2	2134207..2135331	-	374	152995907	-	Mmwyl1_1883	-	response regulator receiver protein
1865	 39.44	-1	2135974..2137824	+	616	152995908	-	Mmwyl1_1884	-	hypothetical protein
1866	 40.14	0	2137825..2138103	+	92	152995909	-	Mmwyl1_1885	-	hypothetical protein
1867	 47.68	+1	2138296..2139738	+	480	152995910	-	Mmwyl1_1886	-	monooxygenase FAD-binding
1868	 38.03	-1	2139735..2141288	-	517	152995911	-	Mmwyl1_1887	-	diguanylate cyclase
1869	 45.87	0	2141485..2142441	+	318	152995912	-	Mmwyl1_1888	-	transcription termination factor Rho
1870	 32.59	-2	2142552..2144696	+	714	152995913	-	Mmwyl1_1889	-	diguanylate cyclase
1871	 38.28	-1	2144812..2145276	-	154	152995914	-	Mmwyl1_1890	-	hypothetical protein
1872	 39.58	-1	2145186..2146130	-	314	152995915	-	Mmwyl1_1891	-	peptidase M23B
1873	 44.36	0	2146382..2147578	-	398	152995916	-	Mmwyl1_1892	-	DEAD/DEAH box helicase domain-containing protein
1874	 42.12	0	2147724..2148440	+	238	152995917	-	Mmwyl1_1893	-	pseudouridine synthase
1875	 41.47	0	2148460..2149368	+	302	152995918	-	Mmwyl1_1894	-	NAD-dependent epimerase/dehydratase
1876	 42.57	0	2150083..2151435	+	450	152995919	-	Mmwyl1_1895	-	glutamate dehydrogenase
1877	 43.93	0	2151520..2153349	-	609	152995920	-	Mmwyl1_1896	-	putative flavoprotein involved in K+ transport
1878	 43.23	0	2153761..2155740	+	659	152995921	-	Mmwyl1_1897	-	Fis family GAF modulated sigma54 specific transcriptional regulator
1879	 42.08	0	2155962..2156864	+	300	152995922	-	Mmwyl1_1898	-	diguanylate cyclase
1880	 40.32	0	2157003..2157374	-	123	152995923	-	Mmwyl1_1899	-	glutaredoxin
1881	 41.67	0	2157549..2157740	+	63	152995924	-	Mmwyl1_1900	-	hypothetical protein
1882	 41.10	0	2157767..2158255	+	162	152995925	-	Mmwyl1_1901	-	hypothetical protein
1883	 39.11	-1	2158297..2159058	-	253	152995926	-	Mmwyl1_1902	-	diguanylate phosphodiesterase
1884	 43.18	0	2159298..2159957	+	219	152995927	-	Mmwyl1_1903	-	NADPH-dependent FMN reductase
1885	 43.41	0	2160091..2161320	-	409	152995928	-	Mmwyl1_1904	-	sodium:dicarboxylate symporter
1886	 43.98	0	2161398..2162825	-	475	152995929	-	Mmwyl1_1905	-	fumarate lyase
1887	 44.33	0	2163091..2164509	-	472	152995930	-	Mmwyl1_1906	-	two component, sigma54 specific, Fis family transcriptional regulator
1888	 42.54	0	2164543..2166225	-	560	152995931	-	Mmwyl1_1907	-	histidine kinase
1889	 37.60	-1	2166376..2166750	+	124	152995932	-	Mmwyl1_1908	-	hypothetical protein
1890	 43.64	0	2166860..2168383	-	507	152995933	-	Mmwyl1_1909	-	amino acid carrier protein
1891	 41.85	0	2168654..2170615	-	653	152995934	-	Mmwyl1_1910	-	hypothetical protein
1892	 41.78	0	2170639..2171715	-	358	152995935	-	Mmwyl1_1911	-	hypothetical protein
1893	 42.00	0	2171782..2172843	-	353	152995936	-	Mmwyl1_1912	-	hypothetical protein
1894	 41.69	0	2172962..2173858	+	298	152995937	-	Mmwyl1_1913	-	LysR family transcriptional regulator
1895	 40.54	0	2173988..2174653	+	221	152995938	-	Mmwyl1_1914	-	histidine kinase
1896	 40.15	0	2174726..2176690	-	654	152995939	-	Mmwyl1_1915	-	sulfatase
1897	 34.00	-2	2176780..2178417	-	545	152995940	-	Mmwyl1_1916	-	sulfatase
1898	 42.11	0	2178718..2178888	-	56	152995941	-	Mmwyl1_1917	-	hypothetical protein
1899	 42.22	0	2178903..2179859	-	318	152995942	-	Mmwyl1_1918	-	hypothetical protein
1900	 43.23	0	2180034..2181428	-	464	152995943	-	Mmwyl1_1919	-	PepSY-associated TM helix domain-containing protein
1901	 43.57	0	2181583..2182080	-	165	152995944	-	Mmwyl1_1920	-	hypothetical protein
1902	 45.80	0	2182104..2182472	-	122	152995945	-	Mmwyl1_1921	-	hypothetical protein
1903	 41.17	0	2182587..2183594	-	335	152995946	-	Mmwyl1_1922	-	adenosine deaminase
1904	 42.70	0	2183756..2184823	-	355	152995947	-	Mmwyl1_1923	-	basic membrane lipoprotein
1905	 45.34	0	2184881..2185813	-	310	152995948	-	Mmwyl1_1924	-	inner-membrane translocator
1906	 43.54	0	2185823..2186890	-	355	152995949	-	Mmwyl1_1925	-	inner-membrane translocator
1907	 42.79	0	2186887..2188440	-	517	152995950	-	Mmwyl1_1926	-	ABC transporter related
43.05	MEAN

3.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.