IslandPathversion 1.0

IslandPath Analysis: Magnetococcus sp. MC-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.32 STD DEV: 4.16
Magnetococcus sp. MC-1, complete genome - 1..4719581
3716 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
770	 47.16	-1	961557..962120	+	187	117924088	-	Mmc1_0778	-	invasion associated locus B family protein
771	 52.58	0	962203..964446	+	747	117924089	-	Mmc1_0779	-	polypeptide-transport-associated domain-containing protein
772	 55.81	0	964458..973856	+	3132	117924090	-	Mmc1_0780	-	filamentous haemagglutinin outer membrane protein
773	 51.66	0	974370..977675	-	1101	117924091	-	Mmc1_0781	-	PAS/PAC sensor hybrid histidine kinase
774	 52.10	0	977826..978635	+	269	117924092	-	Mmc1_0782	-	extracellular solute-binding protein
775	 60.02	+1	979165..982398	+	1077	117924093	-	Mmc1_0783	-	helicase domain-containing protein
776	 65.35	+2	982398..983156	+	252	117924094	-	Mmc1_0784	-	hypothetical protein
777	 58.90	+1	983168..983695	+	175	117924095	-	Mmc1_0785	-	hypothetical protein
778	 63.02	+2	983692..983883	+	63	117924096	-	Mmc1_0786	-	hypothetical protein
779	 54.97	0	983880..985829	+	649	117924097	-	Mmc1_0787	-	site-specific DNA-methyltransferase (adenine-specific)
780	 51.67	0	985840..986859	+	339	117924098	-	Mmc1_0788	-	hypothetical protein
781	 50.56	0	986859..987305	+	148	117924099	-	Mmc1_0789	-	death-on-curing family protein
782	 60.69	+1	987302..990280	+	992	117924100	-	Mmc1_0790	-	type III restriction enzyme, res subunit
783	 55.76	0	990606..993026	-	806	117924101	-	Mmc1_0791	-	methyl-accepting chemotaxis sensory transducer
784	 51.28	0	993298..993570	+	90	117924102	-	Mmc1_0792	-	hypothetical protein
785	 50.25	0	993554..994156	-	200	117924103	-	Mmc1_0793	-	hypothetical protein
786	 54.55	0	994166..994396	-	76	117924104	-	Mmc1_0794	-	SirA family protein
787	 53.17	0	994750..995349	-	199	117924105	-	Mmc1_0795	-	TetR family transcriptional regulator
788	 44.60	-2	995698..996327	+	209	117924106	-	Mmc1_0796	-	hypothetical protein
789	 39.29	-2	996669..997088	+	139	117924107	-	Mmc1_0797	-	BLUF domain-containing protein
790	 50.06	-1	997638..998462	+	274	117924108	-	Mmc1_0798	-	Ion transport protein
791	 65.93	+2	999346..999615	-	89	117924109	-	Mmc1_0800	-	hypothetical protein
792	 67.58	+2	999612..1000490	-	292	117924110	-	Mmc1_0801	-	Fis family transcriptional regulator
793	 57.67	0	1000576..1002564	+	662	117924111	-	Mmc1_0802	-	hypothetical protein
794	 42.22	-2	1002615..1003706	+	363	117924112	-	Mmc1_0803	-	hypothetical protein
795	 52.44	0	1004964..1007015	-	683	117924113	-	Mmc1_0805	-	RpoD family RNA polymerase sigma factor
796	 54.37	0	1007055..1008974	-	639	117924114	-	Mmc1_0806	-	DNA primase
797	 54.05	0	1008983..1009426	-	147	117924115	-	Mmc1_0807	-	GatB/Yqey domain-containing protein
798	 53.46	0	1009966..1010601	+	211	117924116	-	Mmc1_0808	-	carboxymuconolactone decarboxylase
799	 51.98	0	1010927..1012111	+	394	117924117	-	Mmc1_0809	-	hypothetical protein
800	 52.79	0	1012272..1012826	+	184	117924118	-	Mmc1_0810	-	polysaccharide export protein
801	 58.72	+1	1013096..1015498	+	800	117924119	-	Mmc1_0811	-	hypothetical protein
802	 54.98	0	1015627..1016088	-	153	117924120	-	Mmc1_0812	-	hypothetical protein
803	 55.79	0	1016463..1017446	+	327	117924121	-	Mmc1_0813	-	malate dehydrogenase
804	 56.45	0	1017596..1018789	+	397	117924122	-	Mmc1_0814	-	phosphoglycerate mutase
805	 58.33	0	1018912..1019199	-	95	117924123	-	Mmc1_0815	-	50S ribosomal protein L28P
806	 55.71	0	1019561..1019779	+	72	117924124	-	Mmc1_0816	-	hypothetical protein
807	 55.13	0	1020003..1021787	+	594	117924125	-	Mmc1_0817	-	TPR repeat-containing protein
808	 60.05	+1	1021823..1022638	+	271	117924126	-	Mmc1_0818	-	hypothetical protein
809	 58.70	+1	1022635..1023525	+	296	117924127	-	Mmc1_0819	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
810	 55.17	0	1023816..1024763	+	315	117924128	-	Mmc1_0820	-	ribose-phosphate pyrophosphokinase
811	 54.10	0	1024885..1025481	+	198	117924129	-	Mmc1_0821	-	50S ribosomal protein L25P
812	 56.11	0	1025564..1026283	+	239	117924130	-	Mmc1_0822	-	peptidyl-tRNA hydrolase
813	 54.14	0	1026470..1027579	+	369	117924131	-	Mmc1_0823	-	GTP-binding protein YchF
814	 55.49	0	1027793..1028758	-	321	117924132	-	Mmc1_0824	-	homoserine kinase
815	 54.13	0	1029017..1029646	+	209	117924133	-	Mmc1_0825	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
816	 51.91	0	1029669..1030766	+	365	117924134	-	Mmc1_0826	-	peptidase U32
817	 51.61	0	1030766..1031695	+	309	117924135	-	Mmc1_0827	-	peptidase U32
818	 56.06	0	1031826..1032089	+	87	117924136	-	Mmc1_0828	-	hypothetical protein
819	 55.91	0	1032268..1033689	+	473	117924137	-	Mmc1_0829	-	aldehyde dehydrogenase
820	 58.93	+1	1034006..1035568	+	520	117924138	-	Mmc1_0830	-	Mg chelatase, subunit ChlI
821	 54.71	0	1035678..1036229	+	183	117924139	-	Mmc1_0831	-	XRE family transcriptional regulator
822	 54.66	0	1036850..1038040	+	396	117924140	-	Mmc1_0832	-	elongation factor Tu
823	 50.00	-1	1038342..1038497	+	51	117924141	-	Mmc1_0833	-	50S ribosomal protein L33P
824	 51.04	0	1038679..1038870	+	63	117924142	-	Mmc1_0834	-	protein translocase subunit secE/sec61 gamma
825	 47.65	-1	1038977..1039507	+	176	117924143	-	Mmc1_0835	-	transcription antitermination protein nusG
826	 54.08	0	1039544..1039972	+	142	117924144	-	Mmc1_0836	-	50S ribosomal protein L11P
827	 51.88	0	1039983..1040672	+	229	117924145	-	Mmc1_0837	-	50S ribosomal protein L1P
828	 53.56	0	1040956..1041474	+	172	117924146	-	Mmc1_0838	-	50S ribosomal protein L10P
829	 49.73	-1	1041544..1041915	+	123	117924147	-	Mmc1_0839	-	50S ribosomal protein L12P
830	 51.97	0	1042271..1046353	+	1360	117924148	-	Mmc1_0840	-	DNA-directed RNA polymerase, beta subunit
831	 53.39	0	1046510..1050748	+	1412	117924149	-	Mmc1_0841	-	DNA-directed RNA polymerase, beta' subunit
832	 54.03	0	1051014..1051385	+	123	117924150	rpsL	Mmc1_0842	-	30S ribosomal protein S12
833	 53.72	0	1051449..1051919	+	156	117924151	-	Mmc1_0843	-	30S ribosomal protein S7
834	 50.75	0	1051998..1054076	+	692	117924152	-	Mmc1_0844	-	translation elongation factor 2 (EF-2/EF-G)
835	 54.91	0	1054110..1055300	+	396	117924153	-	Mmc1_0845	-	elongation factor Tu
836	 48.08	-1	1055334..1055645	+	103	117924154	-	Mmc1_0846	-	SSU ribosomal protein S10P
837	 52.71	0	1055769..1056413	+	214	117924155	-	Mmc1_0847	-	50S ribosomal protein L3P
838	 51.92	0	1056437..1057060	+	207	117924156	-	Mmc1_0848	-	50S ribosomal protein L4P
839	 52.00	0	1057057..1057356	+	99	117924157	-	Mmc1_0849	-	50S ribosomal protein L23P
840	 52.16	0	1057380..1058213	+	277	117924158	rplB	Mmc1_0850	-	50S ribosomal protein L2
841	 48.39	-1	1058234..1058512	+	92	117924159	-	Mmc1_0851	-	SSU ribosomal protein S19P
842	 53.22	0	1058531..1058872	+	113	117924160	-	Mmc1_0852	-	50S ribosomal protein L22P
843	 51.97	0	1058895..1059527	+	210	117924161	-	Mmc1_0853	-	SSU ribosomal protein S3P
844	 55.56	0	1059546..1059959	+	137	117924162	rplP	Mmc1_0854	-	50S ribosomal protein L16
845	 52.94	0	1059962..1060165	+	67	117924163	-	Mmc1_0855	-	50S ribosomal protein L29P
846	 50.00	-1	1060165..1060416	+	83	117924164	-	Mmc1_0856	-	SSU ribosomal protein S17P
847	 52.30	0	1060429..1060797	+	122	117924165	-	Mmc1_0857	-	50S ribosomal protein L14P
848	 50.15	-1	1060813..1061151	+	112	117924166	-	Mmc1_0858	-	50S ribosomal protein L24P
849	 50.90	0	1061171..1061728	+	185	117924167	rplE	Mmc1_0859	-	50S ribosomal protein L5
850	 53.23	0	1061721..1061906	+	61	117924168	-	Mmc1_0860	-	SSU ribosomal protein S14P
851	 49.87	-1	1061934..1062332	+	132	117924169	-	Mmc1_0861	-	SSU ribosomal protein S8P
852	 50.75	0	1062349..1062882	+	177	117924170	-	Mmc1_0862	-	50S ribosomal protein L6P
853	 52.73	0	1062898..1063263	+	121	117924171	-	Mmc1_0863	-	50S ribosomal protein L18P
854	 51.87	0	1063277..1063810	+	177	117924172	-	Mmc1_0864	-	SSU ribosomal protein S5P
855	 48.89	-1	1063824..1064003	+	59	117924173	-	Mmc1_0865	-	50S ribosomal protein L30P
856	 53.80	0	1064023..1064496	+	157	117924174	-	Mmc1_0866	-	50S ribosomal protein L15P
857	 48.98	-1	1064530..1065858	+	442	117924175	-	Mmc1_0867	-	protein translocase subunit secY/sec61 alpha
858	 45.61	-2	1065911..1066024	+	37	117924176	-	Mmc1_0868	-	50S ribosomal protein L36P
859	 55.28	0	1066186..1066554	+	122	117924177	rpsM	Mmc1_0869	-	30S ribosomal protein S13
860	 53.79	0	1066569..1066964	+	131	117924178	-	Mmc1_0870	-	30S ribosomal protein S11
861	 48.96	-1	1066997..1067623	+	208	117924179	-	Mmc1_0871	-	SSU ribosomal protein S4P
862	 46.14	-1	1067659..1068681	+	340	117924180	-	Mmc1_0872	-	DNA-directed RNA polymerase, alpha subunit
863	 51.97	0	1068693..1069073	+	126	117924181	-	Mmc1_0873	-	50S ribosomal protein L17P
864	 49.79	-1	1069783..1070025	+	80	117924182	-	Mmc1_0874	-	hypothetical protein
865	 54.66	0	1070041..1071639	+	532	117924183	-	Mmc1_0875	-	transposase IS66
866	 45.44	-2	1071772..1072572	+	266	117924184	-	Mmc1_0876	-	hypothetical protein
867	 50.54	0	1073480..1075135	+	551	117924185	-	Mmc1_0877	-	cytochrome c family protein
868	 49.66	-1	1075135..1075728	+	197	117924186	-	Mmc1_0878	-	cytochrome B561
869	 53.12	0	1075785..1076633	-	282	117924187	-	Mmc1_0879	-	glutamine amidotransferase, class-II
54.32	MEAN

4.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.