IslandPathversion 1.0

IslandPath Analysis: Magnetococcus sp. MC-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.32 STD DEV: 4.16
Magnetococcus sp. MC-1, complete genome - 1..4719581
3716 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
703	 55.15	0	854137..857478	+	1113	117924021	-	Mmc1_0711	-	TPR repeat-containing protein
704	 55.56	0	857968..858210	+	80	117924022	-	Mmc1_0712	-	hypothetical protein
705	 54.74	0	858275..858559	+	94	117924023	-	Mmc1_0713	-	hypothetical protein
706	 60.91	+1	858926..859516	+	196	117924024	-	Mmc1_0714	-	5-formyltetrahydrofolate cyclo-ligase
707	 55.25	0	859818..861368	+	516	117924025	-	Mmc1_0715	-	metal dependent phosphohydrolase
708	 53.61	0	861645..862295	-	216	117924026	-	Mmc1_0716	-	hypothetical protein
709	 52.43	0	862544..863449	+	301	117924027	-	Mmc1_0717	-	hypothetical protein
710	 48.48	-1	863606..863869	+	87	117924028	-	Mmc1_0718	-	translation initiation factor 1
711	 57.08	0	863941..865890	+	649	117924029	-	Mmc1_0719	-	DNA topoisomerase IV subunit B
712	 53.17	0	866067..866429	-	120	117924030	-	Mmc1_0720	-	hypothetical protein
713	 55.76	0	866492..868426	+	644	117924031	-	Mmc1_0721	-	arginine decarboxylase
714	 54.07	0	868585..869934	+	449	117924032	-	Mmc1_0722	-	TolC family type I secretion outer membrane protein
715	 51.95	0	869973..870203	+	76	117924033	-	Mmc1_0723	-	NifU domain-containing protein
716	 56.16	0	870219..870770	+	183	117924034	-	Mmc1_0724	-	N-acetyl-anhydromuranmyl-L-alanine amidase
717	 52.75	0	871157..872557	+	466	117924035	-	Mmc1_0725	-	UDP-N-acetylmuramate
718	 52.76	0	872562..873122	+	186	117924036	-	Mmc1_0726	-	hypothetical protein
719	 54.27	0	873361..874110	+	249	117924037	-	Mmc1_0727	-	hypothetical protein
720	 54.48	0	875082..876533	-	483	117924038	-	Mmc1_0728	-	pyruvate kinase
721	 58.02	0	876789..898007	-	7072	117924039	-	Mmc1_0729	-	hemolysin-type calcium-binding region
722	 49.63	-1	898402..899769	-	455	117924040	-	Mmc1_0730	-	HlyD family type I secretion membrane fusion protein
723	 52.66	0	899771..901912	-	713	117924041	-	Mmc1_0731	-	ABC transporter related
724	 57.05	0	901909..904569	-	886	117924042	-	Mmc1_0732	-	ABC transporter related
725	 56.37	0	904949..907366	+	805	117924043	-	Mmc1_0733	-	DEAD/DEAH box helicase domain-containing protein
726	 49.65	-1	907490..908347	+	285	117924044	-	Mmc1_0734	-	phosphonate ABC transporter, periplasmic phosphonate-binding protein
727	 52.11	0	908347..909885	+	512	117924045	-	Mmc1_0735	-	putative PAS/PAC sensor protein
728	 60.26	+1	909952..910731	-	259	117924046	-	Mmc1_0736	-	uroporphyrinogen-III synthase
729	 57.14	0	910802..911746	-	314	117924047	-	Mmc1_0737	-	hydroxymethylbilane synthase
730	 56.13	0	911863..912783	-	306	117924048	-	Mmc1_0738	-	hypothetical protein
731	 54.05	0	912795..914792	-	665	117924049	-	Mmc1_0739	-	methyl-accepting chemotaxis sensory transducer
732	 61.68	+1	915235..916296	+	353	117924050	-	Mmc1_0740	-	O-sialoglycoprotein endopeptidase
733	 60.14	+1	916286..917311	+	341	117924051	-	Mmc1_0741	-	glycerol-3-phosphate dehydrogenase (NAD(P)(+))
734	 52.12	0	917354..918109	-	251	117924052	-	Mmc1_0742	-	dTDP-6-deoxy-L-hexose 3-O-methyltransferase
735	 59.38	+1	918212..919597	-	461	117924053	-	Mmc1_0743	-	two component, sigma54 specific, Fis family transcriptional regulator
736	 55.92	0	919594..921864	-	756	117924054	-	Mmc1_0744	-	PAS/PAC sensor signal transduction histidine kinase
737	 52.29	0	921861..922514	-	217	117924055	-	Mmc1_0745	-	hypothetical protein
738	 51.82	0	922532..923467	-	311	117924056	lpxC	Mmc1_0746	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
739	 56.12	0	923947..925245	-	432	117924057	-	Mmc1_0747	-	cell division protein FtsZ
740	 55.37	0	925321..926559	-	412	117924058	-	Mmc1_0748	-	cell division protein FtsA
741	 53.65	0	926663..927361	-	232	117924059	-	Mmc1_0749	-	polypeptide-transport-associated domain-containing protein
742	 55.20	0	927426..928358	-	310	117924060	-	Mmc1_0750	-	D-alanine--D-alanine ligase
743	 57.48	0	928520..929455	-	311	117924061	-	Mmc1_0751	-	UDP-N-acetylmuramate dehydrogenase
744	 56.81	0	929609..931039	-	476	117924062	-	Mmc1_0752	-	UDP-N-acetylmuramate--L-alanine ligase
745	 59.75	+1	931102..932214	-	370	117924063	-	Mmc1_0753	-	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
746	 56.83	0	932218..933345	-	375	117924064	-	Mmc1_0754	-	cell division protein FtsW
747	 59.71	+1	933411..934775	-	454	117924065	-	Mmc1_0755	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
748	 53.17	0	934777..935865	-	362	117924066	-	Mmc1_0756	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
749	 58.94	+1	935901..937310	-	469	117924067	-	Mmc1_0757	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
750	 57.26	0	937307..938794	-	495	117924068	-	Mmc1_0758	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
751	 55.01	0	938802..940697	-	631	117924069	-	Mmc1_0759	-	peptidoglycan glycosyltransferase
752	 51.65	0	940847..941119	-	90	117924070	-	Mmc1_0760	-	hypothetical protein
753	 56.37	0	941150..942091	-	313	117924071	-	Mmc1_0761	-	S-adenosyl-methyltransferase MraW
754	 54.98	0	943061..944899	-	612	117924072	-	Mmc1_0762	-	carbamoyltransferase
755	 47.33	-1	944923..945072	-	49	117924073	-	Mmc1_0763	-	hypothetical protein
756	 53.04	0	945104..945514	-	136	117924074	-	Mmc1_0764	-	hypothetical protein
757	 54.62	0	945572..946069	+	165	117924075	-	Mmc1_0765	-	hypothetical protein
758	 59.14	+1	946205..947626	+	473	117924076	-	Mmc1_0766	-	GntR family transcriptional regulator
759	 54.82	0	947717..949387	-	556	117924077	-	Mmc1_0767	-	malate dehydrogenase
760	 54.24	0	949854..950867	+	337	117924078	-	Mmc1_0768	-	UDP-galactose 4-epimerase
761	 54.59	0	950857..951750	+	297	117924079	-	Mmc1_0769	-	glycosyl transferase family protein
762	 52.27	0	951758..954493	-	911	117924080	-	Mmc1_0770	-	PAS/PAC sensor hybrid histidine kinase
763	 56.92	0	954544..955743	-	399	117924081	-	Mmc1_0771	-	methionine gamma-lyase
764	 47.86	-1	956215..956682	+	155	117924082	-	Mmc1_0772	-	hypothetical protein
765	 58.76	+1	956810..957757	-	315	117924083	-	Mmc1_0773	-	LysR family transcriptional regulator
766	 59.22	+1	957895..958968	+	357	117924084	-	Mmc1_0774	-	NADH:flavin oxidoreductase/NADH oxidase
767	 57.94	0	959080..959904	+	274	117924085	-	Mmc1_0775	-	pirin domain-containing protein
768	 45.57	-2	960086..960469	-	127	117924086	-	Mmc1_0776	-	response regulator receiver protein
769	 47.80	-1	960619..960936	-	105	117924087	-	Mmc1_0777	-	hypothetical protein
770	 47.16	-1	961557..962120	+	187	117924088	-	Mmc1_0778	-	invasion associated locus B family protein
771	 52.58	0	962203..964446	+	747	117924089	-	Mmc1_0779	-	polypeptide-transport-associated domain-containing protein
772	 55.81	0	964458..973856	+	3132	117924090	-	Mmc1_0780	-	filamentous haemagglutinin outer membrane protein
773	 51.66	0	974370..977675	-	1101	117924091	-	Mmc1_0781	-	PAS/PAC sensor hybrid histidine kinase
774	 52.10	0	977826..978635	+	269	117924092	-	Mmc1_0782	-	extracellular solute-binding protein
775	 60.02	+1	979165..982398	+	1077	117924093	-	Mmc1_0783	-	helicase domain-containing protein
776	 65.35	+2	982398..983156	+	252	117924094	-	Mmc1_0784	-	hypothetical protein
777	 58.90	+1	983168..983695	+	175	117924095	-	Mmc1_0785	-	hypothetical protein
778	 63.02	+2	983692..983883	+	63	117924096	-	Mmc1_0786	-	hypothetical protein
779	 54.97	0	983880..985829	+	649	117924097	-	Mmc1_0787	-	site-specific DNA-methyltransferase (adenine-specific)
780	 51.67	0	985840..986859	+	339	117924098	-	Mmc1_0788	-	hypothetical protein
781	 50.56	0	986859..987305	+	148	117924099	-	Mmc1_0789	-	death-on-curing family protein
782	 60.69	+1	987302..990280	+	992	117924100	-	Mmc1_0790	-	type III restriction enzyme, res subunit
783	 55.76	0	990606..993026	-	806	117924101	-	Mmc1_0791	-	methyl-accepting chemotaxis sensory transducer
784	 51.28	0	993298..993570	+	90	117924102	-	Mmc1_0792	-	hypothetical protein
785	 50.25	0	993554..994156	-	200	117924103	-	Mmc1_0793	-	hypothetical protein
786	 54.55	0	994166..994396	-	76	117924104	-	Mmc1_0794	-	SirA family protein
787	 53.17	0	994750..995349	-	199	117924105	-	Mmc1_0795	-	TetR family transcriptional regulator
788	 44.60	-2	995698..996327	+	209	117924106	-	Mmc1_0796	-	hypothetical protein
789	 39.29	-2	996669..997088	+	139	117924107	-	Mmc1_0797	-	BLUF domain-containing protein
790	 50.06	-1	997638..998462	+	274	117924108	-	Mmc1_0798	-	Ion transport protein
791	 65.93	+2	999346..999615	-	89	117924109	-	Mmc1_0800	-	hypothetical protein
792	 67.58	+2	999612..1000490	-	292	117924110	-	Mmc1_0801	-	Fis family transcriptional regulator
793	 57.67	0	1000576..1002564	+	662	117924111	-	Mmc1_0802	-	hypothetical protein
794	 42.22	-2	1002615..1003706	+	363	117924112	-	Mmc1_0803	-	hypothetical protein
795	 52.44	0	1004964..1007015	-	683	117924113	-	Mmc1_0805	-	RpoD family RNA polymerase sigma factor
796	 54.37	0	1007055..1008974	-	639	117924114	-	Mmc1_0806	-	DNA primase
797	 54.05	0	1008983..1009426	-	147	117924115	-	Mmc1_0807	-	GatB/Yqey domain-containing protein
798	 53.46	0	1009966..1010601	+	211	117924116	-	Mmc1_0808	-	carboxymuconolactone decarboxylase
799	 51.98	0	1010927..1012111	+	394	117924117	-	Mmc1_0809	-	hypothetical protein
800	 52.79	0	1012272..1012826	+	184	117924118	-	Mmc1_0810	-	polysaccharide export protein
801	 58.72	+1	1013096..1015498	+	800	117924119	-	Mmc1_0811	-	hypothetical protein
802	 54.98	0	1015627..1016088	-	153	117924120	-	Mmc1_0812	-	hypothetical protein
54.32	MEAN

4.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.