IslandPathversion 1.0

IslandPath Analysis: Magnetococcus sp. MC-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.32 STD DEV: 4.16
Magnetococcus sp. MC-1, complete genome - 1..4719581
3716 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3314	 46.96	-1	4181409..4181753	-	114	117926632	-	Mmc1_3357	-	iron-sulfur cluster assembly accessory protein
3315	 48.86	-1	4182025..4182507	-	160	117926633	-	Mmc1_3358	-	hemerythrin-like metal-binding protein
3316	 57.69	0	4182950..4184944	+	664	117926634	-	Mmc1_3359	-	serine/threonine protein kinase
3317	 59.16	+1	4185074..4187044	+	656	117926635	-	Mmc1_3360	-	serine/threonine protein kinase
3318	 60.36	+1	4187110..4189362	+	750	117926636	-	Mmc1_3361	-	TPR repeat-containing protein
3319	 52.38	0	4189398..4190615	+	405	117926637	-	Mmc1_3362	-	Bcr/CflA subfamily drug resistance transporter
3320	 60.27	+1	4190678..4191427	-	249	117926638	-	Mmc1_3363	-	hypothetical protein
3321	 58.52	+1	4191737..4192141	-	134	117926639	-	Mmc1_3364	-	hypothetical protein
3322	 55.09	0	4192600..4193247	+	215	117926640	-	Mmc1_3365	-	putative phage repressor
3323	 55.37	0	4193825..4194904	+	359	117926641	-	Mmc1_3366	-	ABC-type uncharacterized transport system periplasmic component-like protein
3324	 53.52	0	4194901..4198080	+	1059	117926642	-	Mmc1_3367	-	multi-sensor hybrid histidine kinase
3325	 50.54	0	4198407..4199336	+	309	117926643	-	Mmc1_3368	-	hypothetical protein
3326	 55.51	0	4199454..4200251	+	265	117926644	-	Mmc1_3369	-	response regulator receiver protein
3327	 58.52	+1	4200384..4200788	+	134	117926645	-	Mmc1_3370	-	hypothetical protein
3328	 50.87	0	4200823..4201455	+	210	117926646	-	Mmc1_3371	-	ECF subfamily RNA polymerase sigma-24 factor
3329	 55.77	0	4201568..4201879	+	103	117926647	-	Mmc1_3372	-	hypothetical protein
3330	 56.39	0	4201964..4202401	+	145	117926648	-	Mmc1_3373	-	hypothetical protein
3331	 58.52	+1	4202811..4203473	+	220	117926649	-	Mmc1_3374	-	paraquat-inducible protein A
3332	 54.62	0	4203470..4204108	+	212	117926650	-	Mmc1_3375	-	paraquat-inducible protein A
3333	 53.10	0	4204176..4205855	+	559	117926651	-	Mmc1_3376	-	hypothetical protein
3334	 51.98	0	4205874..4206479	+	201	117926652	-	Mmc1_3377	-	hypothetical protein
3335	 58.84	+1	4208102..4209340	+	412	117926653	-	Mmc1_3378	-	major facilitator transporter
3336	 54.18	0	4209297..4210337	-	346	117926654	-	Mmc1_3379	-	DNA polymerase III, delta subunit
3337	 56.48	0	4210440..4212668	-	742	117926655	-	Mmc1_3380	-	RecD/TraA family helicase
3338	 58.23	0	4212735..4214156	-	473	117926656	-	Mmc1_3381	-	periplasmic sensor signal transduction histidine kinase
3339	 56.89	0	4214153..4214878	-	241	117926657	-	Mmc1_3382	-	two component transcriptional regulator
3340	 57.39	0	4215227..4216444	+	405	117926658	-	Mmc1_3383	-	hypothetical protein
3341	 60.22	+1	4216441..4218084	+	547	117926659	-	Mmc1_3384	-	Fis family transcriptional regulator
3342	 57.56	0	4218077..4221262	+	1061	117926660	-	Mmc1_3385	-	CzcA family heavy metal efflux protein
3343	 53.97	0	4221265..4221642	+	125	117926661	-	Mmc1_3386	-	cation efflux system protein
3344	 54.83	0	4221876..4223657	+	593	117926662	-	Mmc1_3387	-	histidine kinase
3345	 56.29	0	4223654..4224337	+	227	117926663	-	Mmc1_3388	-	two component transcriptional regulator
3346	 52.82	0	4224481..4225101	-	206	117926664	-	Mmc1_3389	-	two component LuxR family transcriptional regulator
3347	 51.89	0	4225221..4227074	+	617	117926665	-	Mmc1_3390	-	MCP methyltransferase, CheR-type
3348	 49.79	-1	4227160..4227402	+	80	117926666	-	Mmc1_3391	-	hypothetical protein
3349	 54.66	0	4227418..4229016	+	532	117926667	-	Mmc1_3392	-	transposase IS66
3350	 50.24	0	4229013..4230650	+	545	117926668	-	Mmc1_3393	-	putative PAS/PAC sensor protein
3351	 47.59	-1	4230691..4232373	+	560	117926669	-	Mmc1_3394	-	PAS/PAC sensor hybrid histidine kinase
3352	 49.18	-1	4232385..4234889	+	834	117926670	-	Mmc1_3395	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
3353	 48.56	-1	4234886..4237669	+	927	117926671	-	Mmc1_3396	-	PAS/PAC sensor hybrid histidine kinase
3354	 48.15	-1	4237750..4238316	-	188	117926672	-	Mmc1_3397	-	hypothetical protein
3355	 47.80	-1	4238514..4239080	-	188	117926673	-	Mmc1_3398	-	hypothetical protein
3356	 53.30	0	4239120..4239680	-	186	117926674	-	Mmc1_3399	-	hypothetical protein
3357	 55.09	0	4240449..4241303	+	284	117926675	-	Mmc1_3400	-	cation diffusion facilitator family transporter
3358	 55.56	0	4241404..4241844	-	146	117926676	-	Mmc1_3401	-	glyoxalase/bleomycin resistance protein/dioxygenase
3359	 54.06	0	4241899..4244523	-	874	117926677	-	Mmc1_3402	-	multi-sensor hybrid histidine kinase
3360	 52.40	0	4244795..4247668	-	957	117926678	-	Mmc1_3403	-	PAS/PAC sensor hybrid histidine kinase
3361	 50.64	0	4247668..4248522	-	284	117926679	-	Mmc1_3404	-	phosphonate ABC transporter, periplasmic phosphonate-binding protein
3362	 60.13	+1	4248614..4249516	-	300	117926680	-	Mmc1_3405	-	phage SPO1 DNA polymerase-related protein
3363	 50.25	0	4250107..4251099	-	330	117926681	-	Mmc1_3406	-	radical SAM domain-containing protein
3364	 55.63	0	4251679..4252548	+	289	117926682	-	Mmc1_3407	-	hypothetical protein
3365	 55.24	0	4252752..4253792	-	346	117926683	-	Mmc1_3408	-	response regulator receiver modulated metal dependent phosphohydrolase
3366	 55.53	0	4253942..4261906	-	2654	117926684	-	Mmc1_3409	-	multi-sensor hybrid histidine kinase
3367	 56.55	0	4262020..4263936	-	638	117926685	-	Mmc1_3410	-	ABC transporter related
3368	 50.31	0	4264183..4264659	+	158	117926686	-	Mmc1_3411	-	hypothetical protein
3369	 54.67	0	4264734..4265783	+	349	117926687	-	Mmc1_3412	-	sporulation domain-containing protein
3370	 55.13	0	4265780..4266013	+	77	117926688	-	Mmc1_3413	-	hypothetical protein
3371	 52.05	0	4266017..4267699	+	560	117926689	-	Mmc1_3414	-	diverse 7TM receptor, extracellular region 2
3372	 63.54	+2	4267744..4268319	-	191	117926690	-	Mmc1_3415	-	molybdopterin biosynthesis protein
3373	 58.23	0	4268332..4269267	-	311	117926691	-	Mmc1_3416	-	cysteine synthase
3374	 62.36	+1	4269331..4270026	-	231	117926692	-	Mmc1_3417	-	UBA/THIF-type NAD/FAD binding protein
3375	 53.46	0	4270031..4270492	-	153	117926693	-	Mmc1_3418	-	BadM/Rrf2 family transcriptional regulator
3376	 58.81	+1	4270651..4271172	-	173	117926694	-	Mmc1_3419	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
3377	 59.62	+1	4271154..4272374	-	406	117926695	-	Mmc1_3420	-	phosphopantothenoylcysteine decarboxylase / phosphopantothenate-cysteine ligase
3378	 53.75	0	4272639..4273025	+	128	117926696	-	Mmc1_3421	-	GTP cyclohydrolase I
3379	 53.80	0	4273178..4273651	-	157	117926697	-	Mmc1_3422	-	preprotein translocase subunit SecB
3380	 58.00	0	4273718..4275436	-	572	117926698	-	Mmc1_3423	-	DEAD/DEAH box helicase domain-containing protein
3381	 59.50	+1	4275845..4276123	-	92	117926699	-	Mmc1_3424	-	SSU ribosomal protein S20P
3382	 56.67	0	4276345..4277934	+	529	117926700	-	Mmc1_3425	-	integral membrane protein MviN
3383	 60.06	+1	4278607..4279545	+	312	117926701	-	Mmc1_3426	-	dihydroorotate oxidase B, catalytic subunit
3384	 55.81	0	4279556..4280347	+	263	117926702	-	Mmc1_3427	-	nuclease
3385	 55.52	0	4280352..4281275	+	307	117926703	-	Mmc1_3428	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
3386	 56.80	0	4281376..4281963	-	195	117926704	-	Mmc1_3429	-	hypothetical protein
3387	 54.28	0	4282225..4283766	-	513	117926705	-	Mmc1_3430	-	diguanylate cyclase
3388	 53.43	0	4284077..4284892	-	271	117926706	-	Mmc1_3431	-	methyltransferase type 11
3389	 52.91	0	4285000..4285617	-	205	117926707	-	Mmc1_3432	-	inorganic pyrophosphatase
3390	 57.66	0	4285896..4287527	+	543	117926708	-	Mmc1_3433	-	phosphoglucomutase
3391	 57.27	0	4287759..4289492	+	577	117926709	-	Mmc1_3434	-	sodium/hydrogen exchanger
3392	 52.40	0	4289582..4292056	-	824	117926710	-	Mmc1_3435	-	glycogen/starch/alpha-glucan phosphorylases
3393	 57.13	0	4292198..4293634	-	478	117926711	-	Mmc1_3436	-	cation transporter
3394	 56.00	0	4293631..4294989	-	452	117926712	trkA	Mmc1_3437	-	potassium transporter peripheral membrane component
3395	 51.40	0	4295018..4295908	-	296	117926713	-	Mmc1_3438	-	ankyrin
3396	 53.29	0	4295940..4296395	-	151	117926714	-	Mmc1_3439	-	hypothetical protein
3397	 54.18	0	4296861..4298270	-	469	117926715	-	Mmc1_3441	-	hypothetical protein
3398	 52.79	0	4298304..4299701	-	465	117926716	-	Mmc1_3442	-	Na+/H+ antiporter NhaD
3399	 46.88	-1	4299817..4300488	-	223	117926717	-	Mmc1_3443	-	response regulator receiver protein
3400	 51.37	0	4300607..4302142	-	511	117926718	-	Mmc1_3444	-	periplasmic sensor signal transduction histidine kinase
3401	 52.63	0	4302390..4303358	-	322	117926719	-	Mmc1_3445	-	LysR family transcriptional regulator
3402	 53.89	0	4303732..4304670	-	312	117926720	-	Mmc1_3446	-	LysR family transcriptional regulator
3403	 55.22	0	4305327..4305920	-	197	117926721	-	Mmc1_3447	-	putative lipoprotein
3404	 56.01	0	4305951..4308494	-	847	117926722	-	Mmc1_3448	-	hypothetical protein
3405	 56.13	0	4308502..4309251	-	249	117926723	-	Mmc1_3449	-	DNA topoisomerase type IA Zn finger domain-containing protein
3406	 59.73	+1	4309278..4310258	+	326	117926724	-	Mmc1_3450	-	hypothetical protein
3407	 49.83	-1	4310302..4310895	-	197	117926725	-	Mmc1_3451	-	intracellular septation protein A
3408	 62.18	+1	4311040..4312197	-	385	117926726	-	Mmc1_3452	-	hypothetical protein
3409	 56.24	0	4312569..4314026	+	485	117926727	-	Mmc1_3453	-	macrocin-O-methyltransferase domain-containing protein
3410	 57.60	0	4314115..4314963	-	282	117926728	-	Mmc1_3454	-	hypothetical protein
3411	 54.88	0	4314969..4316801	-	610	117926729	-	Mmc1_3455	-	glutamine--fructose-6-phosphate transaminase
3412	 55.26	0	4316866..4318233	-	455	117926730	-	Mmc1_3456	-	glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase
3413	 53.86	0	4318469..4318882	-	137	117926731	-	Mmc1_3457	-	ATP synthase F1, epsilon subunit
54.32	MEAN

4.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.