IslandPathversion 1.0

IslandPath Analysis: Magnetococcus sp. MC-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.32 STD DEV: 4.16
Magnetococcus sp. MC-1, complete genome - 1..4719581
3716 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3222	 57.13	0	4066770..4069505	-	911	117926540	-	Mmc1_3261	-	DNA polymerase I
3223	 58.55	+1	4069740..4070897	+	385	117926541	-	Mmc1_3262	-	major facilitator transporter
3224	 60.21	+1	4070936..4072081	+	381	117926542	-	Mmc1_3263	-	hypothetical protein
3225	 50.93	0	4072191..4072406	+	71	117926543	-	Mmc1_3264	-	hypothetical protein
3226	 55.85	0	4072393..4074666	+	757	117926544	-	Mmc1_3265	-	ATPase involved in DNA repair-like protein
3227	 56.39	0	4074663..4075586	+	307	117926545	-	Mmc1_3266	-	phosphate-binding protein
3228	 54.98	0	4075687..4076781	-	364	117926546	-	Mmc1_3267	-	glycosyl transferase family protein
3229	 53.64	0	4076834..4077739	-	301	117926547	-	Mmc1_3268	-	glycosyl transferase family protein
3230	 58.21	0	4077836..4079917	-	693	117926548	-	Mmc1_3269	-	TPR repeat-containing protein
3231	 57.53	0	4080101..4081249	-	382	117926549	-	Mmc1_3270	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
3232	 54.41	0	4081408..4086483	-	1691	117926550	-	Mmc1_3271	-	PAS/PAC sensor hybrid histidine kinase
3233	 55.13	0	4086594..4087772	-	392	117926551	-	Mmc1_3272	-	cysteinyl-tRNA synthetase
3234	 55.39	0	4088146..4089324	+	392	117926552	-	Mmc1_3273	-	glycosyl transferase, group 1
3235	 58.81	+1	4089923..4091563	-	546	117926553	-	Mmc1_3274	-	hypothetical protein
3236	 54.06	0	4091771..4092238	+	155	117926554	-	Mmc1_3275	-	hypothetical protein
3237	 57.05	0	4092337..4093521	-	394	117926555	-	Mmc1_3276	-	aminotransferase
3238	 52.31	0	4093593..4094414	+	273	117926556	-	Mmc1_3277	-	glycosyl transferase family protein
3239	 62.91	+2	4094422..4095192	-	256	117926557	cobS	Mmc1_3278	-	cobalamin synthase
3240	 61.26	+1	4095185..4096276	-	363	117926558	-	Mmc1_3279	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
3241	 51.88	0	4096475..4096846	+	123	117926559	-	Mmc1_3280	-	hypothetical protein
3242	 63.08	+2	4097494..4098135	-	213	117926560	-	Mmc1_3281	-	O-methyltransferase-like protein
3243	 55.89	0	4098263..4098763	+	166	117926561	-	Mmc1_3282	-	rubrerythrin
3244	 56.24	0	4099065..4099889	+	274	117926562	-	Mmc1_3283	-	inositol monophosphatase
3245	 55.99	0	4099933..4100925	+	330	117926563	-	Mmc1_3284	-	ribokinase-like domain-containing protein
3246	 51.88	0	4101028..4101426	+	132	117926564	-	Mmc1_3285	-	type IV pilus assembly PilZ
3247	 56.90	0	4101423..4102067	+	214	117926565	-	Mmc1_3286	-	thiamine-phosphate pyrophosphorylase
3248	 48.62	-1	4102124..4102522	+	132	117926566	-	Mmc1_3287	-	putative transcriptional regulator
3249	 46.27	-1	4102634..4103143	+	169	117926567	-	Mmc1_3288	-	hypothetical protein
3250	 40.77	-2	4103175..4104089	+	304	117926568	-	Mmc1_3289	-	hypothetical protein
3251	 52.08	0	4104717..4105004	-	95	117926569	-	Mmc1_3291	-	hypothetical protein
3252	 52.94	0	4105431..4107011	-	526	117926570	-	Mmc1_3292	-	transposase IS66
3253	 50.56	0	4107047..4107406	-	119	117926571	-	Mmc1_3293	-	IS66 Orf2 family protein
3254	 50.88	0	4107406..4107747	-	113	117926572	-	Mmc1_3294	-	hypothetical protein
3255	 53.21	0	4107876..4108343	-	155	117926573	-	Mmc1_3295	-	TraR/DksA family transcriptional regulator
3256	 58.09	0	4108502..4109923	-	473	117926574	-	Mmc1_3296	-	FAD linked oxidase domain-containing protein
3257	 58.09	0	4109977..4110582	-	201	117926575	-	Mmc1_3297	-	transport-associated
3258	 57.07	0	4110669..4111043	-	124	117926576	-	Mmc1_3298	-	hypothetical protein
3259	 58.63	+1	4111117..4111887	-	256	117926577	-	Mmc1_3299	-	Fis family transcriptional regulator
3260	 60.32	+1	4111965..4113995	+	676	117926578	-	Mmc1_3300	-	ABC-type branched-chain amino acid transport systems periplasmic component-like protein
3261	 50.76	0	4114134..4115447	+	437	117926579	-	Mmc1_3301	-	hypothetical protein
3262	 56.62	0	4115535..4116221	+	228	117926580	-	Mmc1_3302	-	regulatory protein, MarR
3263	 52.74	0	4116218..4119514	+	1098	117926581	-	Mmc1_3303	-	tetratricopeptide domain-containing protein
3264	 59.72	+1	4119578..4120441	-	287	117926582	-	Mmc1_3304	-	hypothetical protein
3265	 55.60	0	4120589..4121365	-	258	117926583	-	Mmc1_3305	-	ABC transporter
3266	 57.65	0	4121443..4122351	-	302	117926584	-	Mmc1_3306	-	ABC transporter related
3267	 64.74	+2	4122456..4124015	+	519	117926585	-	Mmc1_3307	-	carbohydrate kinase, YjeF related protein
3268	 54.81	0	4124395..4126443	+	682	117926586	-	Mmc1_3308	-	methyl-accepting chemotaxis sensory transducer
3269	 60.28	+1	4126683..4127699	-	338	117926587	-	Mmc1_3309	-	hypothetical protein
3270	 56.18	0	4127706..4128554	-	282	117926588	-	Mmc1_3310	-	hypothetical protein
3271	 60.44	+1	4128780..4129952	+	390	117926589	-	Mmc1_3311	-	glycosyl transferase, group 1
3272	 57.58	0	4130146..4131543	+	465	117926590	-	Mmc1_3312	-	hypothetical protein
3273	 56.34	0	4131752..4132603	+	283	117926591	-	Mmc1_3313	-	hypothetical protein
3274	 59.52	+1	4132617..4133651	-	344	117926592	-	Mmc1_3314	-	twin-arginine translocation pathway signal
3275	 53.76	0	4133745..4134689	+	314	117926593	-	Mmc1_3315	-	NAD-dependent epimerase/dehydratase
3276	 53.19	0	4134890..4135453	-	187	117926594	-	Mmc1_3316	-	hypothetical protein
3277	 54.27	0	4135497..4135859	-	120	117926595	-	Mmc1_3317	-	hypothetical protein
3278	 47.35	-1	4137318..4137845	+	175	117926596	-	Mmc1_3319	-	hypothetical protein
3279	 38.92	-2	4138751..4139269	+	172	117926597	-	Mmc1_3321	-	hypothetical protein
3280	 42.46	-2	4139269..4140024	+	251	117926598	-	Mmc1_3322	-	hypothetical protein
3281	 38.46	-2	4140067..4141860	+	597	117926599	-	Mmc1_3323	-	hypothetical protein
3282	 50.00	-1	4142520..4142741	+	73	117926600	-	Mmc1_3325	-	IS600 ORF1
3283	 56.51	0	4142807..4144057	-	416	117926601	-	Mmc1_3326	-	hypothetical protein
3284	 53.73	0	4144244..4146949	-	901	117926602	-	Mmc1_3327	-	protein translocase subunit secA
3285	 60.61	+1	4147223..4148014	-	263	117926603	-	Mmc1_3328	-	sporulation domain-containing protein
3286	 51.79	0	4148172..4148561	+	129	117926604	-	Mmc1_3329	-	hypothetical protein
3287	 56.44	0	4148660..4149109	+	149	117926605	-	Mmc1_3330	-	hypothetical protein
3288	 53.85	0	4149295..4150620	-	441	117926606	-	Mmc1_3331	-	S-adenosyl-L-homocysteine hydrolase
3289	 54.70	0	4150735..4151904	-	389	117926607	-	Mmc1_3332	-	S-adenosylmethionine synthetase
3290	 56.81	0	4152084..4153016	-	310	117926608	-	Mmc1_3333	-	hypothetical protein
3291	 53.49	0	4153054..4154586	-	510	117926609	-	Mmc1_3334	-	RNA polymerase, sigma 54 subunit, RpoN
3292	 56.31	0	4154716..4155468	-	250	117926610	-	Mmc1_3335	-	ABC transporter related
3293	 55.56	0	4155487..4156026	-	179	117926611	-	Mmc1_3336	-	OstA family protein
3294	 55.56	0	4156029..4156604	-	191	117926612	-	Mmc1_3337	-	hypothetical protein
3295	 58.42	0	4156617..4157174	-	185	117926613	-	Mmc1_3338	-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
3296	 60.14	+1	4157175..4158155	-	326	117926614	-	Mmc1_3339	-	KpsF/GutQ family protein
3297	 55.53	0	4158371..4159528	+	385	117926615	-	Mmc1_3340	-	signal-transduction protein
3298	 52.48	0	4159545..4159967	+	140	117926616	-	Mmc1_3341	-	CoA-binding domain-containing protein
3299	 53.19	0	4160362..4161192	+	276	117926617	-	Mmc1_3342	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
3300	 55.14	0	4161198..4163600	+	800	117926618	-	Mmc1_3343	-	periplasmic sensor hybrid histidine kinase
3301	 56.51	0	4163597..4167769	+	1390	117926619	-	Mmc1_3344	-	PAS/PAC sensor hybrid histidine kinase
3302	 59.17	+1	4167845..4168324	-	159	117926620	-	Mmc1_3345	-	hypothetical protein
3303	 55.80	0	4168321..4169001	-	226	117926621	-	Mmc1_3346	-	iojap-like protein
3304	 56.89	0	4168998..4169672	-	224	117926622	-	Mmc1_3347	-	nicotinate-nucleotide adenylyltransferase
3305	 56.29	0	4169675..4170946	-	423	117926623	-	Mmc1_3348	-	glutamate-5-semialdehyde dehydrogenase
3306	 56.26	0	4171457..4172590	-	377	117926624	-	Mmc1_3349	-	glutamate 5-kinase
3307	 55.41	0	4172593..4173756	-	387	117926625	-	Mmc1_3350	-	GTP1/OBG domain-containing protein
3308	 55.17	0	4174100..4174360	-	86	117926626	rpmA	Mmc1_3351	-	50S ribosomal protein L27
3309	 50.65	0	4174384..4174689	-	101	117926627	-	Mmc1_3352	-	50S ribosomal protein L21P
3310	 58.12	0	4174905..4175501	-	198	117926628	-	Mmc1_3353	-	maf protein
3311	 54.32	0	4175811..4176806	+	331	117926629	-	Mmc1_3354	-	trans-hexaprenyltranstransferase
3312	 53.79	0	4177380..4179437	-	685	117926630	-	Mmc1_3355	-	periplasmic sensor hybrid histidine kinase
3313	 61.34	+1	4179695..4181251	-	518	117926631	-	Mmc1_3356	-	hypothetical protein
3314	 46.96	-1	4181409..4181753	-	114	117926632	-	Mmc1_3357	-	iron-sulfur cluster assembly accessory protein
3315	 48.86	-1	4182025..4182507	-	160	117926633	-	Mmc1_3358	-	hemerythrin-like metal-binding protein
3316	 57.69	0	4182950..4184944	+	664	117926634	-	Mmc1_3359	-	serine/threonine protein kinase
3317	 59.16	+1	4185074..4187044	+	656	117926635	-	Mmc1_3360	-	serine/threonine protein kinase
3318	 60.36	+1	4187110..4189362	+	750	117926636	-	Mmc1_3361	-	TPR repeat-containing protein
3319	 52.38	0	4189398..4190615	+	405	117926637	-	Mmc1_3362	-	Bcr/CflA subfamily drug resistance transporter
3320	 60.27	+1	4190678..4191427	-	249	117926638	-	Mmc1_3363	-	hypothetical protein
3321	 58.52	+1	4191737..4192141	-	134	117926639	-	Mmc1_3364	-	hypothetical protein
54.32	MEAN

4.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.