IslandPathversion 1.0

IslandPath Analysis: Magnetococcus sp. MC-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.32 STD DEV: 4.16
Magnetococcus sp. MC-1, complete genome - 1..4719581
3716 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
272	 46.71	-1	312216..312671	+	151	117923590	-	Mmc1_0274	-	hypothetical protein
273	 56.56	0	312740..313471	-	243	117923591	-	Mmc1_0275	-	short-chain dehydrogenase/reductase SDR
274	 56.35	0	313530..314450	+	306	117923592	-	Mmc1_0276	-	tRNA delta(2)-isopentenylpyrophosphate transferase
275	 45.35	-2	314696..314953	+	85	117923593	-	Mmc1_0277	-	RNA-binding protein Hfq
276	 54.20	0	315020..316318	+	432	117923594	-	Mmc1_0278	-	GTP-binding protein, HSR1-related
277	 50.35	0	318313..319587	-	424	117923595	-	Mmc1_0279	-	metal dependent phosphohydrolase
278	 53.33	0	320040..320384	+	114	117923596	-	Mmc1_0280	-	hypothetical protein
279	 51.30	0	320472..321011	-	179	117923597	-	Mmc1_0281	-	hypothetical protein
280	 49.10	-1	321021..321242	-	73	117923598	-	Mmc1_0282	-	rubredoxin-type Fe(Cys)4 protein
281	 52.67	0	321914..322363	+	149	117923599	-	Mmc1_0283	-	hypothetical protein
282	 58.09	0	322581..323186	+	201	117923600	-	Mmc1_0284	-	hypothetical protein
283	 52.17	0	323330..323605	+	91	117923601	-	Mmc1_0285	-	hypothetical protein
284	 52.71	0	323709..324059	-	116	117923602	-	Mmc1_0286	-	arsenate reductase
285	 54.85	0	324075..324497	-	140	117923603	-	Mmc1_0287	-	hypothetical protein
286	 58.32	0	324717..327485	+	922	117923604	-	Mmc1_0288	-	hypothetical protein
287	 55.04	0	327824..329053	+	409	117923605	-	Mmc1_0289	-	hypothetical protein
288	 54.19	0	329100..330926	+	608	117923606	-	Mmc1_0290	-	hypothetical protein
289	 61.14	+1	330926..332011	+	361	117923607	-	Mmc1_0291	-	FAD dependent oxidoreductase
290	 56.17	0	332469..333011	-	180	117923608	-	Mmc1_0292	-	hypothetical protein
291	 55.27	0	333465..335834	+	789	117923609	-	Mmc1_0293	-	TPR repeat-containing protein
292	 58.10	0	335845..336171	-	108	117923610	-	Mmc1_0294	-	hypothetical protein
293	 56.94	0	336285..337940	-	551	117923611	-	Mmc1_0295	-	chaperonin GroEL
294	 51.02	0	338016..338309	-	97	117923612	-	Mmc1_0296	-	chaperonin Cpn10
295	 55.93	0	338740..339885	-	381	117923613	-	Mmc1_0297	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
296	 49.63	-1	340981..343680	-	899	117923614	-	Mmc1_0298	-	periplasmic sensor hybrid histidine kinase
297	 57.71	0	343683..344162	-	159	117923615	-	Mmc1_0299	-	hypothetical protein
298	 53.86	0	344509..345882	-	457	117923616	-	Mmc1_0300	-	two component, sigma54 specific, Fis family transcriptional regulator
299	 52.23	0	345888..348623	-	911	117923617	-	Mmc1_0301	-	TPR repeat-containing protein
300	 51.22	0	348623..349684	-	353	117923618	-	Mmc1_0302	-	sigma-54 dependent trancsriptional regulator
301	 55.03	0	350214..351236	+	340	117923619	-	Mmc1_0303	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
302	 57.49	0	351233..352627	+	464	117923620	-	Mmc1_0304	-	diguanylate cyclase
303	 57.29	0	352637..353521	+	294	117923621	-	Mmc1_0305	-	squalene/phytoene synthase
304	 57.44	0	353518..354384	+	288	117923622	-	Mmc1_0306	-	squalene/phytoene synthase
305	 62.29	+1	354371..355717	+	448	117923623	-	Mmc1_0307	-	amine oxidase
306	 50.94	0	355731..356639	+	302	117923624	-	Mmc1_0308	-	DNA uptake lipoprotein-like protein
307	 58.44	0	356719..357849	+	376	117923625	-	Mmc1_0309	-	RND family efflux transporter MFP subunit
308	 51.73	0	357893..360877	-	994	117923626	-	Mmc1_0310	-	methyl-accepting chemotaxis sensory transducer
309	 56.85	0	360992..362356	-	454	117923627	-	Mmc1_0311	-	periplasmic sensor signal transduction histidine kinase
310	 56.16	0	362353..363018	-	221	117923628	-	Mmc1_0312	-	two component transcriptional regulator
311	 56.29	0	363021..363338	-	105	117923629	-	Mmc1_0313	-	membrane protein
312	 52.68	0	363331..363909	-	192	117923630	-	Mmc1_0314	-	hypothetical protein
313	 56.18	0	363925..364296	-	123	117923631	-	Mmc1_0315	-	hypothetical protein
314	 56.77	0	364293..364868	-	191	117923632	-	Mmc1_0316	-	cytochrome B561
315	 44.95	-2	365328..371249	+	1973	117923633	-	Mmc1_0317	-	superfamily I DNA/RNA helicase
316	 52.02	0	371461..371931	-	156	117923634	-	Mmc1_0318	-	transposase IS66
317	 50.88	0	372074..372415	+	113	117923635	-	Mmc1_0319	-	hypothetical protein
318	 50.56	0	372415..372774	+	119	117923636	-	Mmc1_0320	-	IS66 Orf2 family protein
319	 52.94	0	372810..374390	+	526	117923637	-	Mmc1_0321	-	transposase IS66
320	 53.16	0	374290..375474	-	394	117923638	-	Mmc1_0322	-	transposase IS66
321	 50.56	0	375510..375869	-	119	117923639	-	Mmc1_0323	-	IS66 Orf2 family protein
322	 50.88	0	375869..376210	-	113	117923640	-	Mmc1_0324	-	hypothetical protein
323	 52.98	0	376826..378067	-	413	117923641	-	Mmc1_0326	-	hypothetical protein
324	 52.65	0	378341..378982	+	213	117923642	-	Mmc1_0327	-	3'-5' exonuclease
325	 61.56	+1	378995..379738	+	247	117923643	-	Mmc1_0328	-	short-chain dehydrogenase/reductase SDR
326	 51.97	0	379735..380115	+	126	117923644	-	Mmc1_0329	-	dihydroneopterin aldolase
327	 59.56	+1	380144..380692	+	182	117923645	-	Mmc1_0330	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
328	 52.53	0	380721..383252	+	843	117923646	-	Mmc1_0331	-	PAS/PAC sensor hybrid histidine kinase
329	 58.44	0	383425..384834	-	469	117923647	-	Mmc1_0332	-	phosphomannomutase
330	 54.59	0	384839..386155	-	438	117923648	-	Mmc1_0333	-	UDP-glucose 6-dehydrogenase
331	 55.36	0	386473..387144	-	223	117923649	-	Mmc1_0334	-	methyltransferase type 11
332	 52.49	0	387132..388013	-	293	117923650	-	Mmc1_0335	-	UDP-glucose pyrophosphorylase
333	 53.33	0	388146..388535	-	129	117923651	-	Mmc1_0336	-	transmembrane region and signal peptide prediction
334	 57.75	0	389056..390300	+	414	117923652	-	Mmc1_0337	-	tryptophan synthase subunit beta
335	 56.92	0	390297..391076	+	259	117923653	trpA	Mmc1_0338	-	tryptophan synthase subunit alpha
336	 54.78	0	391210..392286	-	358	117923654	-	Mmc1_0339	-	hypothetical protein
337	 55.56	0	392443..393855	-	470	117923655	-	Mmc1_0340	-	two component, sigma54 specific, Fis family transcriptional regulator
338	 51.72	0	394483..396081	+	532	117923656	-	Mmc1_0341	-	phosphatidylethanolamine:Kdo2-lipid A phosphoethanolamine transferase
339	 51.90	0	396405..397034	+	209	117923657	-	Mmc1_0342	-	hypothetical protein
340	 53.55	0	397061..397525	-	154	117923658	-	Mmc1_0343	-	hypothetical protein
341	 50.41	0	397822..398307	+	161	117923659	-	Mmc1_0344	-	XRE family transcriptional regulator
342	 47.14	-1	398658..399041	+	127	117923660	-	Mmc1_0345	-	hypothetical protein
343	 53.94	0	399227..400585	-	452	117923661	-	Mmc1_0346	-	tryptophan synthase subunit beta
344	 56.91	0	400801..401589	+	262	117923662	-	Mmc1_0347	-	dienelactone hydrolase
345	 52.52	0	401760..402374	-	204	117923663	-	Mmc1_0348	-	lytic transglycosylase, catalytic
346	 51.09	0	402539..403135	-	198	117923664	-	Mmc1_0349	-	peptidyl-prolyl cis-trans isomerase, cyclophilin type
347	 52.16	0	403543..404445	+	300	117923665	-	Mmc1_0350	-	Ppx/GppA phosphatase
348	 54.06	0	404673..405140	-	155	117923666	-	Mmc1_0351	-	17 kDa surface antigen
349	 50.99	0	405437..406546	+	369	117923667	-	Mmc1_0352	-	RelA/SpoT domain-containing protein
350	 54.26	0	406650..407189	+	179	117923668	-	Mmc1_0353	-	hypothetical protein
351	 49.70	-1	407300..407629	-	109	117923669	-	Mmc1_0354	-	glutaredoxin-like protein
352	 48.15	-1	407661..407903	-	80	117923670	-	Mmc1_0355	-	BolA family protein
353	 49.88	-1	408250..409083	-	277	117923671	-	Mmc1_0356	-	cytochrome c1
354	 51.74	0	409103..410308	-	401	117923672	-	Mmc1_0357	-	cytochrome b/b6 domain-containing protein
355	 54.75	0	410344..410880	-	178	117923673	-	Mmc1_0358	-	ubiquinol-cytochrome c reductase, iron-sulfur subunit
356	 55.05	0	411082..411606	+	174	117923674	-	Mmc1_0359	-	tRNA/rRNA methyltransferase (SpoU)
357	 58.61	+1	411709..413160	+	483	117923675	-	Mmc1_0360	-	phosphoglucosamine mutase
358	 55.26	0	413297..414304	+	335	117923676	-	Mmc1_0361	-	hypothetical protein
359	 55.90	0	414288..416702	+	804	117923677	-	Mmc1_0362	-	TPR repeat-containing protein
360	 53.67	0	416837..418783	+	648	117923678	-	Mmc1_0363	-	threonyl-tRNA synthetase
361	 51.37	0	418910..419458	+	182	117923679	-	Mmc1_0364	-	translation initiation factor 3
362	 49.49	-1	419701..419898	+	65	117923680	-	Mmc1_0365	-	50S ribosomal protein L35P
363	 51.13	0	420008..420361	+	117	117923681	-	Mmc1_0366	-	50S ribosomal protein L20P
364	 53.01	0	421259..422305	+	348	117923682	-	Mmc1_0367	-	phenylalanyl-tRNA synthetase, alpha subunit
365	 58.59	+1	422398..424788	+	796	117923683	-	Mmc1_0368	-	phenylalanyl-tRNA synthetase beta subunit
366	 54.17	0	424942..426558	-	538	117923684	-	Mmc1_0369	-	phosphoenolpyruvate carboxykinase
367	 58.62	+1	427075..428205	-	376	117923685	-	Mmc1_0370	-	peptidase M23B
368	 55.79	0	428193..428771	-	192	117923686	-	Mmc1_0371	-	hypothetical protein
369	 61.57	+1	428780..429466	-	228	117923687	-	Mmc1_0372	-	protein-L-isoaspartate O-methyltransferase
370	 57.60	0	429448..430197	-	249	117923688	-	Mmc1_0373	-	5'-nucleotidase / 3'-nucleotidase / exopolyphosphatase
371	 59.62	+1	430516..431466	-	316	117923689	-	Mmc1_0374	-	hypothetical protein
54.32	MEAN

4.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.