IslandPathversion 1.0

IslandPath Analysis: Magnetococcus sp. MC-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.32 STD DEV: 4.16
Magnetococcus sp. MC-1, complete genome - 1..4719581
3716 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2989	 51.36	0	3787004..3787741	+	245	117926307	-	Mmc1_3027	-	type IV pilus assembly PilZ
2990	 56.94	0	3787767..3788660	-	297	117926308	-	Mmc1_3028	-	putative PAS/PAC sensor protein
2991	 54.31	0	3788657..3790105	-	482	117926309	-	Mmc1_3029	-	adenylate/guanylate cyclase
2992	 51.04	0	3790092..3792497	-	801	117926310	-	Mmc1_3030	-	multi-sensor signal transduction histidine kinase
2993	 51.11	0	3792504..3794927	-	807	117926311	-	Mmc1_3031	-	multi-sensor signal transduction histidine kinase
2994	 56.33	0	3795563..3796297	+	244	117926312	-	Mmc1_3032	-	hypothetical protein
2995	 59.45	+1	3796382..3797296	+	304	117926313	-	Mmc1_3033	-	methyltransferase type 11
2996	 60.07	+1	3797309..3797611	-	100	117926314	-	Mmc1_3034	-	flagellar biosynthetic protein (FlhB)-like protein
2997	 61.19	+1	3797616..3798710	-	364	117926315	-	Mmc1_3035	-	hypothetical protein
2998	 55.08	0	3798833..3799393	-	186	117926316	-	Mmc1_3036	-	hypothetical protein
2999	 54.02	0	3799520..3800302	-	260	117926317	-	Mmc1_3037	-	FliA/WhiG family RNA polymerase sigma factor
3000	 53.68	0	3800306..3801337	-	343	117926318	-	Mmc1_3038	-	cobyrinic acid a,c-diamide synthase
3001	 60.56	+1	3801424..3802782	-	452	117926319	-	Mmc1_3039	-	GTP-binding signal recognition particle
3002	 55.57	0	3802883..3805009	-	708	117926320	-	Mmc1_3040	-	flagellar biosynthesis protein FlhA
3003	 50.92	0	3805222..3805767	+	181	117926321	-	Mmc1_3041	-	hypothetical protein
3004	 55.41	0	3805915..3807495	+	526	117926322	-	Mmc1_3042	-	membrane bound O-acyl transferase, MBOAT family protein
3005	 60.76	+1	3807992..3809176	+	394	117926323	-	Mmc1_3043	-	major facilitator transporter
3006	 58.21	0	3809298..3810692	+	464	117926324	-	Mmc1_3044	-	major facilitator transporter
3007	 52.07	0	3810819..3811955	-	378	117926325	-	Mmc1_3045	-	methyltransferase type 12
3008	 48.78	-1	3812728..3813588	+	286	117926326	-	Mmc1_3046	-	hypothetical protein
3009	 58.72	+1	3814161..3815129	+	322	117926327	-	Mmc1_3047	-	dipeptidyl aminopeptidases/acylaminoacyl-peptidases-like protein
3010	 49.79	-1	3815126..3816079	+	317	117926328	-	Mmc1_3048	-	C4-dicarboxylate transporter/malic acid transport protein
3011	 50.00	-1	3816715..3817086	-	123	117926329	-	Mmc1_3049	-	hypothetical protein
3012	 47.24	-1	3817083..3818585	-	500	117926330	-	Mmc1_3050	-	hypothetical protein
3013	 49.26	-1	3818614..3819624	-	336	117926331	-	Mmc1_3051	-	transcriptional factor
3014	 43.77	-2	3819788..3820084	+	98	117926332	-	Mmc1_3052	-	hypothetical protein
3015	 54.51	0	3820114..3821454	+	446	117926333	-	Mmc1_3053	-	transposase, IS4 family protein
3016	 39.91	-2	3821728..3822396	+	222	117926334	-	Mmc1_3054	-	hypothetical protein
3017	 37.69	-2	3822393..3823241	+	282	117926335	-	Mmc1_3055	-	hypothetical protein
3018	 50.26	0	3824257..3824451	-	64	117926336	-	Mmc1_3056	-	hypothetical protein
3019	 49.55	-1	3824461..3824793	-	110	117926337	-	Mmc1_3057	-	ferredoxin
3020	 60.33	+1	3824854..3826731	-	625	117926338	-	Mmc1_3058	-	Fe-S protein assembly chaperone HscA
3021	 58.33	0	3826817..3827440	-	207	117926339	-	Mmc1_3059	-	co-chaperone Hsc20
3022	 55.85	0	3827523..3827864	-	113	117926340	-	Mmc1_3060	-	iron-sulfur cluster assembly accessory protein
3023	 51.40	0	3827867..3828259	-	130	117926341	-	Mmc1_3061	-	scaffold protein
3024	 55.03	0	3828368..3829579	-	403	117926342	-	Mmc1_3062	-	cysteine desulfurase IscS
3025	 63.11	+2	3829707..3830858	-	383	117926343	-	Mmc1_3063	-	aminotransferase, class V
3026	 59.70	+1	3830855..3831328	-	157	117926344	-	Mmc1_3064	-	BadM/Rrf2 family transcriptional regulator
3027	 54.62	0	3831340..3832053	-	237	117926345	-	Mmc1_3065	-	serine O-acetyltransferase
3028	 54.01	0	3832550..3832873	+	107	117926346	-	Mmc1_3066	-	hypothetical protein
3029	 46.88	-1	3833194..3833577	+	127	117926347	-	Mmc1_3067	-	hypothetical protein
3030	 56.10	0	3833780..3834148	+	122	117926348	-	Mmc1_3068	-	hypothetical protein
3031	 46.36	-1	3835300..3835629	+	109	117926349	-	Mmc1_3069	-	hypothetical protein
3032	 50.99	0	3835670..3839170	-	1166	117926350	-	Mmc1_3070	-	multi-sensor hybrid histidine kinase
3033	 51.92	0	3839293..3840465	-	390	117926351	-	Mmc1_3071	-	response regulator receiver protein
3034	 54.24	0	3840474..3841535	-	353	117926352	-	Mmc1_3072	-	response regulator receiver modulated metal dependent phosphohydrolase
3035	 56.78	0	3842377..3843276	-	299	117926353	-	Mmc1_3073	-	hypothetical protein
3036	 57.91	0	3843378..3844805	-	475	117926354	-	Mmc1_3074	-	magnesium transporter
3037	 54.57	0	3844897..3846549	-	550	117926355	-	Mmc1_3075	-	histidine kinase
3038	 53.85	0	3846728..3848443	+	571	117926356	-	Mmc1_3076	-	hypothetical protein
3039	 55.26	0	3848545..3849438	-	297	117926357	-	Mmc1_3077	-	RNA polymerase, sigma 32 subunit, RpoH
3040	 55.02	0	3849743..3850180	+	145	117926358	-	Mmc1_3078	-	heat shock protein Hsp20
3041	 52.11	0	3850359..3850571	-	70	117926359	-	Mmc1_3079	-	cold-shock DNA-binding protein family protein
3042	 55.65	0	3850795..3851130	-	111	117926360	-	Mmc1_3080	-	Mu-like prophage I protein-like
3043	 59.76	+1	3851406..3851651	+	81	117926361	-	Mmc1_3081	-	hypothetical protein
3044	 60.54	+1	3851783..3852043	-	86	117926362	-	Mmc1_3082	-	hypothetical protein
3045	 54.02	0	3852068..3853111	-	347	117926363	-	Mmc1_3083	-	glutathione synthetase
3046	 57.77	0	3853111..3855009	-	632	117926364	-	Mmc1_3084	-	hypothetical protein
3047	 54.50	0	3855019..3855873	-	284	117926365	-	Mmc1_3085	-	hypothetical protein
3048	 53.45	0	3855909..3856256	-	115	117926366	-	Mmc1_3086	-	hypothetical protein
3049	 52.41	0	3856529..3857377	+	282	117926367	-	Mmc1_3087	-	LysR family transcriptional regulator
3050	 58.46	0	3857407..3857796	-	129	117926368	-	Mmc1_3088	-	thioesterase superfamily protein
3051	 53.72	0	3858371..3859498	+	375	117926369	-	Mmc1_3089	-	hypothetical protein
3052	 56.46	0	3859495..3860817	+	440	117926370	-	Mmc1_3090	-	glycosyl transferase, group 1
3053	 51.09	0	3860861..3862009	+	382	117926371	-	Mmc1_3091	-	ExsB family protein
3054	 58.12	0	3862801..3863034	-	77	117926372	-	Mmc1_3093	-	carbon storage regulator, CsrA / carbon storage regulator, CsrA
3055	 55.82	0	3863199..3863705	-	168	117926373	-	Mmc1_3094	-	hypothetical protein
3056	 58.56	+1	3863823..3864155	-	110	117926374	-	Mmc1_3095	-	anti-sigma-28 factor, FlgM
3057	 55.77	0	3864358..3864834	-	158	117926375	-	Mmc1_3096	-	hypothetical protein
3058	 57.80	0	3864834..3865994	-	386	117926376	flgI	Mmc1_3097	-	flagellar basal body P-ring protein
3059	 54.51	0	3866216..3866914	-	232	117926377	-	Mmc1_3098	-	flagellar L-ring protein
3060	 56.68	0	3866972..3867682	-	236	117926378	-	Mmc1_3099	-	flagellar basal body P-ring biosynthesis protein-like protein
3061	 56.06	0	3867769..3868560	-	263	117926379	-	Mmc1_3100	-	flagellar basal-body rod protein FlgG
3062	 55.43	0	3868626..3869435	-	269	117926380	-	Mmc1_3101	-	flagellar basal body rod protein
3063	 55.40	0	3869786..3870619	+	277	117926381	-	Mmc1_3102	-	MazG family protein
3064	 43.43	-2	3870747..3871073	+	108	117926382	-	Mmc1_3103	-	anti-sigma-factor antagonist
3065	 51.71	0	3871198..3871899	-	233	117926383	-	Mmc1_3104	-	invasion associated locus B family protein
3066	 59.51	+1	3871924..3873852	-	642	117926384	-	Mmc1_3105	-	hypothetical protein
3067	 55.40	0	3874037..3874879	+	280	117926385	-	Mmc1_3106	-	hypothetical protein
3068	 54.48	0	3875370..3876485	+	371	117926386	-	Mmc1_3107	-	hypothetical protein
3069	 52.60	0	3876503..3876829	-	108	117926387	-	Mmc1_3108	-	hypothetical protein
3070	 49.87	-1	3877237..3877998	+	253	117926388	-	Mmc1_3109	-	hemerythrin-like metal-binding protein
3071	 60.44	+1	3878092..3878814	-	240	117926389	-	Mmc1_3110	-	hypothetical protein
3072	 57.33	0	3878989..3879288	-	99	117926390	-	Mmc1_3111	-	hypothetical protein
3073	 50.25	0	3879296..3879703	-	135	117926391	-	Mmc1_3112	-	cytochrome c, testis
3074	 55.22	0	3880421..3882280	-	619	117926392	-	Mmc1_3113	-	hypothetical protein
3075	 57.13	0	3882273..3883079	-	268	117926393	-	Mmc1_3114	-	ABC transporter related
3076	 55.71	0	3883094..3885739	-	881	117926394	-	Mmc1_3115	-	hypothetical protein
3077	 59.04	+1	3886622..3887605	-	327	117926395	-	Mmc1_3116	-	hypothetical protein
3078	 54.78	0	3887762..3888535	+	257	117926396	-	Mmc1_3117	-	hypothetical protein
3079	 43.41	-2	3889002..3889418	-	138	117926397	-	Mmc1_3118	-	hypothetical protein
3080	 32.99	-2	3890261..3891718	+	485	117926398	-	Mmc1_3119	-	hypothetical protein
3081	 58.33	0	3892007..3892282	-	91	117926399	-	Mmc1_3120	-	hypothetical protein
3082	 62.57	+1	3892288..3893532	-	414	117926400	-	Mmc1_3121	-	hypothetical protein
3083	 55.31	0	3893625..3894452	-	275	117926401	-	Mmc1_3122	-	methyltransferase type 11
3084	 61.45	+1	3894696..3895442	+	248	117926402	-	Mmc1_3123	-	hypothetical protein
3085	 54.58	0	3895488..3896513	-	341	117926403	-	Mmc1_3124	-	metal dependent phosphohydrolase
3086	 56.84	0	3896893..3899151	-	752	117926404	-	Mmc1_3125	-	hypothetical protein
3087	 64.09	+2	3899259..3900305	-	348	117926405	-	Mmc1_3126	-	histidinol phosphate aminotransferase
3088	 60.75	+1	3900347..3901849	+	500	117926406	-	Mmc1_3127	-	adenosylcobyric acid synthase (glutamine-hydrolysing)
54.32	MEAN

4.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.