IslandPathversion 1.0

IslandPath Analysis: Magnetococcus sp. MC-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.32 STD DEV: 4.16
Magnetococcus sp. MC-1, complete genome - 1..4719581
3716 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2758	 51.88	0	3506554..3508569	-	671	117926076	-	Mmc1_2794	-	sporulation domain-containing protein
2759	 53.78	0	3508851..3510449	-	532	117926077	-	Mmc1_2795	-	transposase IS66
2760	 46.46	-1	3510415..3510711	-	98	117926078	-	Mmc1_2796	-	hypothetical protein
2761	 65.77	+2	3510985..3511206	-	73	117926079	-	Mmc1_2797	-	hypothetical protein
2762	 67.25	+2	3511187..3512563	-	458	117926080	-	Mmc1_2798	-	hypothetical protein
2763	 58.84	+1	3512560..3513696	-	378	117926081	-	Mmc1_2799	-	hypothetical protein
2764	 55.56	0	3513700..3514086	-	128	117926082	-	Mmc1_2800	-	hypothetical protein
2765	 54.41	0	3514098..3514619	-	173	117926083	-	Mmc1_2801	-	hypothetical protein
2766	 57.95	0	3514594..3515568	-	324	117926084	-	Mmc1_2802	-	hypothetical protein
2767	 57.49	0	3515574..3516608	-	344	117926085	-	Mmc1_2803	-	hypothetical protein
2768	 59.02	+1	3516614..3516979	-	121	117926086	-	Mmc1_2804	-	putative transmembrane protein
2769	 59.83	+1	3516987..3520538	-	1183	117926087	-	Mmc1_2805	-	TP901 family phage tail tape measure protein
2770	 45.41	-2	3520619..3521173	+	184	117926088	-	Mmc1_2806	-	hypothetical protein
2771	 54.74	0	3521269..3521637	-	122	117926089	-	Mmc1_2807	-	hypothetical protein
2772	 55.60	0	3521643..3522383	-	246	117926090	-	Mmc1_2808	-	hypothetical protein
2773	 54.07	0	3522619..3523023	-	134	117926091	-	Mmc1_2809	-	hypothetical protein
2774	 57.26	0	3523025..3523396	-	123	117926092	-	Mmc1_2810	-	hypothetical protein
2775	 56.75	0	3523399..3524316	-	305	117926093	-	Mmc1_2811	-	hypothetical protein
2776	 56.20	0	3524328..3524585	-	85	117926094	-	Mmc1_2812	-	hypothetical protein
2777	 59.12	+1	3524588..3524905	-	105	117926095	-	Mmc1_2813	-	hypothetical protein
2778	 56.80	0	3524908..3525921	-	337	117926096	-	Mmc1_2814	-	hypothetical protein
2779	 60.21	+1	3525924..3526589	-	221	117926097	-	Mmc1_2815	-	putative phage protein GP19
2780	 58.99	+1	3526607..3527908	-	433	117926098	-	Mmc1_2816	-	serine peptidase
2781	 42.41	-2	3527964..3528437	+	157	117926099	-	Mmc1_2817	-	response regulator receiver protein
2782	 58.38	0	3528504..3529988	-	494	117926100	-	Mmc1_2818	-	lambda family phage portal protein
2783	 56.34	0	3529988..3530200	-	70	117926101	-	Mmc1_2819	-	hypothetical protein
2784	 58.00	0	3530523..3532379	-	618	117926102	-	Mmc1_2820	-	phage terminase GpA
2785	 53.03	0	3532476..3532673	+	65	117926103	-	Mmc1_2821	-	hypothetical protein
2786	 54.43	0	3532700..3533083	+	127	117926104	-	Mmc1_2822	-	hypothetical protein
2787	 56.37	0	3533136..3533834	+	232	117926105	-	Mmc1_2823	-	hypothetical protein
2788	 55.07	0	3533898..3534173	-	91	117926106	-	Mmc1_2824	-	nucleoid protein Hbs
2789	 58.65	+1	3534266..3535612	-	448	117926107	-	Mmc1_2825	-	nuclease
2790	 60.87	+1	3535605..3536156	-	183	117926108	-	Mmc1_2826	-	hypothetical protein
2791	 49.15	-1	3536248..3537126	-	292	117926109	-	Mmc1_2827	-	HNH nuclease
2792	 50.79	0	3537258..3537509	+	83	117926110	-	Mmc1_2828	-	CopG/Arc/MetJ family transcriptional regulator
2793	 49.19	-1	3537506..3537814	+	102	117926111	-	Mmc1_2829	-	plasmid stabilization system protein
2794	 55.17	0	3537816..3538415	-	199	117926112	-	Mmc1_2830	-	hypothetical protein
2795	 60.00	+1	3539137..3539436	-	99	117926113	-	Mmc1_2831	-	hypothetical protein
2796	 51.85	0	3539433..3539621	-	62	117926114	-	Mmc1_2832	-	hypothetical protein
2797	 56.89	0	3539624..3540022	-	132	117926115	-	Mmc1_2833	-	peptidase M15A
2798	 42.40	-2	3540508..3541257	+	249	117926116	-	Mmc1_2834	-	hemerythrin-like metal-binding protein
2799	 52.90	0	3541711..3542400	-	229	117926117	-	Mmc1_2835	-	deoxyribonuclease I
2800	 54.18	0	3542469..3543878	-	469	117926118	-	Mmc1_2836	-	hypothetical protein
2801	 52.23	0	3544105..3544395	-	96	117926119	-	Mmc1_2837	-	integration host factor, alpha subunit
2802	 58.15	0	3544530..3544928	-	132	117926120	-	Mmc1_2838	-	hypothetical protein
2803	 61.11	+1	3544921..3545136	-	71	117926121	-	Mmc1_2839	-	hypothetical protein
2804	 59.08	+1	3545133..3545633	-	166	117926122	-	Mmc1_2840	-	hypothetical protein
2805	 55.17	0	3545986..3548124	-	712	117926123	-	Mmc1_2841	-	TOPRIM domain-containing protein
2806	 56.24	0	3548121..3548897	-	258	117926124	-	Mmc1_2842	-	hypothetical protein
2807	 52.01	0	3548894..3549616	-	240	117926125	-	Mmc1_2843	-	hypothetical protein
2808	 55.63	0	3549631..3550056	-	141	117926126	-	Mmc1_2844	-	hypothetical protein
2809	 54.37	0	3550056..3551738	-	560	117926127	-	Mmc1_2845	-	type III restriction enzyme, res subunit
2810	 48.57	-1	3551735..3552397	-	220	117926128	-	Mmc1_2846	-	hypothetical protein
2811	 55.35	0	3552409..3553053	-	214	117926129	-	Mmc1_2847	-	hypothetical protein
2812	 59.14	+1	3553059..3553961	-	300	117926130	-	Mmc1_2848	-	hypothetical protein
2813	 52.24	0	3553958..3554761	-	267	117926131	-	Mmc1_2849	-	hypothetical protein
2814	 51.22	0	3554745..3555398	-	217	117926132	-	Mmc1_2850	-	ECF subfamily RNA polymerase sigma-24 factor
2815	 51.53	0	3555662..3556771	-	369	117926133	-	Mmc1_2851	-	hypothetical protein
2816	 50.81	0	3556768..3558009	-	413	117926134	-	Mmc1_2852	-	hypothetical protein
2817	 51.92	0	3558084..3558734	-	216	117926135	-	Mmc1_2853	-	hypothetical protein
2818	 50.39	0	3558736..3559122	-	128	117926136	-	Mmc1_2854	-	XRE family transcriptional regulator
2819	 47.22	-1	3559301..3559516	+	71	117926137	-	Mmc1_2855	-	hypothetical protein
2820	 59.54	+1	3559506..3559940	+	144	117926138	-	Mmc1_2856	-	hypothetical protein
2821	 54.26	0	3559937..3561274	+	445	117926139	-	Mmc1_2857	-	resolvase domain-containing protein
2822	 50.60	0	3561274..3561690	+	138	117926140	-	Mmc1_2858	-	hypothetical protein
2823	 47.87	-1	3562276..3563025	+	249	117926141	-	Mmc1_2859	-	yecA family protein
2824	 51.75	0	3563561..3563875	+	104	117926142	-	Mmc1_2860	-	hypothetical protein
2825	 52.16	0	3563944..3564405	+	153	117926143	-	Mmc1_2861	-	phage integrase family protein
2826	 53.90	0	3564421..3565548	+	375	117926144	-	Mmc1_2862	-	putative transposase
2827	 51.19	0	3565978..3566946	-	322	117926145	-	Mmc1_2863	-	hypothetical protein
2828	 51.46	0	3566990..3568015	+	341	117926146	-	Mmc1_2864	-	integrase catalytic subunit
2829	 42.89	-2	3568189..3569643	-	484	117926147	-	Mmc1_2865	-	glycosyl transferase family protein
2830	 55.98	0	3569740..3569973	-	77	117926148	-	Mmc1_2866	-	hypothetical protein
2831	 53.66	0	3569986..3571338	-	450	117926149	-	Mmc1_2867	-	transposase IS66
2832	 52.99	0	3571860..3572678	-	272	117926150	-	Mmc1_2869	-	glycosyl transferase family protein
2833	 60.61	+1	3572689..3572985	-	98	117926151	-	Mmc1_2870	-	hypothetical protein
2834	 53.16	0	3573007..3574065	-	352	117926152	-	Mmc1_2871	-	NAD-dependent epimerase/dehydratase
2835	 55.71	0	3574092..3575159	-	355	117926153	-	Mmc1_2872	-	NAD-dependent epimerase/dehydratase
2836	 57.66	0	3576476..3576697	-	73	117926154	-	Mmc1_2874	-	hypothetical protein
2837	 58.53	+1	3576678..3578054	-	458	117926155	-	Mmc1_2875	-	hypothetical protein
2838	 58.84	+1	3578051..3579187	-	378	117926156	-	Mmc1_2876	-	hypothetical protein
2839	 55.04	0	3579191..3579577	-	128	117926157	-	Mmc1_2877	-	hypothetical protein
2840	 54.60	0	3579589..3580110	-	173	117926158	-	Mmc1_2878	-	hypothetical protein
2841	 57.23	0	3580085..3581059	-	324	117926159	-	Mmc1_2879	-	hypothetical protein
2842	 57.87	0	3581065..3582099	-	344	117926160	-	Mmc1_2880	-	hypothetical protein
2843	 58.47	0	3582102..3582467	-	121	117926161	-	Mmc1_2881	-	putative transmembrane protein
2844	 59.94	+1	3582475..3586026	-	1183	117926162	-	Mmc1_2882	-	TP901 family phage tail tape measure protein
2845	 48.74	-1	3586131..3586565	+	144	117926163	-	Mmc1_2883	-	hypothetical protein
2846	 47.19	-1	3586553..3586783	+	76	117926164	-	Mmc1_2884	-	hypothetical protein
2847	 54.45	0	3586852..3587244	-	130	117926165	-	Mmc1_2885	-	hypothetical protein
2848	 56.68	0	3587250..3587990	-	246	117926166	-	Mmc1_2886	-	hypothetical protein
2849	 53.04	0	3587996..3588406	-	136	117926167	-	Mmc1_2887	-	hypothetical protein
2850	 54.30	0	3588408..3588779	-	123	117926168	-	Mmc1_2888	-	hypothetical protein
2851	 56.43	0	3588782..3589699	-	305	117926169	-	Mmc1_2889	-	hypothetical protein
2852	 56.59	0	3589711..3589968	-	85	117926170	-	Mmc1_2890	-	hypothetical protein
2853	 59.12	+1	3589971..3590288	-	105	117926171	-	Mmc1_2891	-	hypothetical protein
2854	 56.90	0	3590291..3591304	-	337	117926172	-	Mmc1_2892	-	hypothetical protein
2855	 60.96	+1	3591307..3591972	-	221	117926173	-	Mmc1_2893	-	putative phage protein GP19
2856	 60.81	+1	3591987..3593165	-	392	117926174	-	Mmc1_2894	-	serine peptidase
2857	 49.46	-1	3593262..3593540	+	92	117926175	-	Mmc1_2895	-	plasmid maintenance system killer
54.32	MEAN

4.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.