IslandPathversion 1.0

IslandPath Analysis: Magnetococcus sp. MC-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.32 STD DEV: 4.16
Magnetococcus sp. MC-1, complete genome - 1..4719581
3716 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2699	 50.79	0	3460281..3460595	+	104	117926017	-	Mmc1_2735	-	XRE family transcriptional regulator
2700	 54.71	0	3460664..3461056	-	130	117926018	-	Mmc1_2736	-	hypothetical protein
2701	 56.95	0	3461062..3461802	-	246	117926019	-	Mmc1_2737	-	hypothetical protein
2702	 52.55	0	3461808..3462218	-	136	117926020	-	Mmc1_2738	-	hypothetical protein
2703	 56.72	0	3462220..3462591	-	123	117926021	-	Mmc1_2739	-	hypothetical protein
2704	 57.19	0	3462594..3463511	-	305	117926022	-	Mmc1_2740	-	hypothetical protein
2705	 55.43	0	3463523..3463780	-	85	117926023	-	Mmc1_2741	-	hypothetical protein
2706	 60.38	+1	3463783..3464100	-	105	117926024	-	Mmc1_2742	-	hypothetical protein
2707	 57.30	0	3464103..3465116	-	337	117926025	-	Mmc1_2743	-	hypothetical protein
2708	 59.61	+1	3465119..3465784	-	221	117926026	-	Mmc1_2744	-	putative phage protein GP19
2709	 59.53	+1	3465799..3467031	-	410	117926027	-	Mmc1_2745	-	serine peptidase
2710	 58.59	+1	3467454..3468938	-	494	117926028	-	Mmc1_2746	-	lambda family phage portal protein
2711	 56.02	0	3468938..3469153	-	71	117926029	-	Mmc1_2747	-	hypothetical protein
2712	 57.35	0	3469157..3471013	-	618	117926030	-	Mmc1_2748	-	phage terminase GpA
2713	 53.54	0	3471110..3471307	+	65	117926031	-	Mmc1_2749	-	hypothetical protein
2714	 53.91	0	3471334..3471717	+	127	117926032	-	Mmc1_2750	-	hypothetical protein
2715	 53.98	0	3471770..3472447	+	225	117926033	-	Mmc1_2751	-	hypothetical protein
2716	 52.91	0	3472547..3472735	+	62	117926034	-	Mmc1_2752	-	hypothetical protein
2717	 58.20	0	3472769..3474127	-	452	117926035	-	Mmc1_2753	-	nuclease
2718	 59.93	+1	3474120..3474683	-	187	117926036	-	Mmc1_2754	-	hypothetical protein
2719	 48.81	-1	3474775..3475653	-	292	117926037	-	Mmc1_2755	-	HNH nuclease
2720	 50.79	0	3475785..3476036	+	83	117926038	-	Mmc1_2756	-	CopG/Arc/MetJ family transcriptional regulator
2721	 48.87	-1	3476033..3476341	+	102	117926039	-	Mmc1_2757	-	plasmid stabilization system protein
2722	 58.79	+1	3476343..3476939	-	198	117926040	-	Mmc1_2758	-	hypothetical protein
2723	 58.59	+1	3476936..3477232	-	98	117926041	-	Mmc1_2759	-	hypothetical protein
2724	 56.61	0	3477229..3477417	-	62	117926042	-	Mmc1_2760	-	hypothetical protein
2725	 47.46	-1	3477520..3477795	+	91	117926043	-	Mmc1_2761	-	histone family protein DNA-binding protein
2726	 56.74	0	3477798..3478190	-	130	117926044	-	Mmc1_2762	-	peptidase M15A
2727	 55.39	0	3478436..3478843	-	135	117926045	-	Mmc1_2763	-	hypothetical protein
2728	 58.90	+1	3478836..3479054	-	72	117926046	-	Mmc1_2764	-	hypothetical protein
2729	 60.08	+1	3479051..3479551	-	166	117926047	-	Mmc1_2765	-	putative bacteriophage-related protein
2730	 56.08	0	3479913..3482075	-	720	117926048	-	Mmc1_2766	-	TOPRIM domain-containing protein
2731	 56.37	0	3482072..3482848	-	258	117926049	-	Mmc1_2767	-	hypothetical protein
2732	 51.96	0	3482845..3483558	-	237	117926050	-	Mmc1_2768	-	hypothetical protein
2733	 56.57	0	3483569..3483994	-	141	117926051	-	Mmc1_2769	-	hypothetical protein
2734	 55.79	0	3483994..3485676	-	560	117926052	-	Mmc1_2770	-	type III restriction enzyme, res subunit
2735	 54.21	0	3485688..3486329	-	213	117926053	-	Mmc1_2771	-	hypothetical protein
2736	 59.91	+1	3486335..3487237	-	300	117926054	-	Mmc1_2772	-	hypothetical protein
2737	 52.91	0	3487234..3488076	-	280	117926055	-	Mmc1_2773	-	hypothetical protein
2738	 49.72	-1	3488743..3489462	-	239	117926056	-	Mmc1_2774	-	hypothetical protein
2739	 53.08	0	3489512..3490306	+	264	117926057	-	Mmc1_2775	-	putative phage repressor
2740	 53.05	0	3490636..3491061	+	141	117926058	-	Mmc1_2776	-	hypothetical protein
2741	 52.56	0	3491064..3492389	+	441	117926059	-	Mmc1_2777	-	recombinase
2742	 55.71	0	3492389..3492808	+	139	117926060	-	Mmc1_2778	-	hypothetical protein
2743	 51.09	0	3492925..3493200	+	91	117926061	-	Mmc1_2779	-	hypothetical protein
2744	 45.21	-2	3493203..3494078	+	291	117926062	-	Mmc1_2780	-	SecC motif-containing protein
2745	 49.95	-1	3494640..3495584	-	314	117926063	-	Mmc1_2781	-	hypothetical protein
2746	 52.83	0	3495627..3496652	+	341	117926064	-	Mmc1_2782	-	integrase catalytic subunit
2747	 48.64	-1	3497375..3497668	-	97	117926065	-	Mmc1_2783	-	hypothetical protein
2748	 53.16	0	3497665..3498012	-	115	117926066	-	Mmc1_2784	-	putative transposase
2749	 48.45	-1	3498123..3499055	-	310	117926067	-	Mmc1_2785	-	hypothetical protein
2750	 50.36	0	3499099..3499656	+	185	117926068	-	Mmc1_2786	-	hypothetical protein
2751	 52.34	0	3499801..3500121	+	106	117926069	-	Mmc1_2787	-	integrase core subunit
2752	 54.66	0	3500469..3501809	-	446	117926070	-	Mmc1_2788	-	hypothetical protein
2753	 61.37	+1	3501954..3502859	-	301	117926071	-	Mmc1_2789	-	transposase, IS4 family protein
2754	 56.92	0	3502954..3504195	-	413	117926072	-	Mmc1_2790	-	periplasmic protein
2755	 54.48	0	3504179..3505540	-	453	117926073	-	Mmc1_2791	-	hypothetical protein
2756	 51.92	0	3505546..3506169	-	207	117926074	-	Mmc1_2792	-	hypothetical protein
2757	 49.57	-1	3506198..3506548	-	116	117926075	-	Mmc1_2793	-	hypothetical protein
2758	 51.88	0	3506554..3508569	-	671	117926076	-	Mmc1_2794	-	sporulation domain-containing protein
2759	 53.78	0	3508851..3510449	-	532	117926077	-	Mmc1_2795	-	transposase IS66
2760	 46.46	-1	3510415..3510711	-	98	117926078	-	Mmc1_2796	-	hypothetical protein
2761	 65.77	+2	3510985..3511206	-	73	117926079	-	Mmc1_2797	-	hypothetical protein
2762	 67.25	+2	3511187..3512563	-	458	117926080	-	Mmc1_2798	-	hypothetical protein
2763	 58.84	+1	3512560..3513696	-	378	117926081	-	Mmc1_2799	-	hypothetical protein
2764	 55.56	0	3513700..3514086	-	128	117926082	-	Mmc1_2800	-	hypothetical protein
2765	 54.41	0	3514098..3514619	-	173	117926083	-	Mmc1_2801	-	hypothetical protein
2766	 57.95	0	3514594..3515568	-	324	117926084	-	Mmc1_2802	-	hypothetical protein
2767	 57.49	0	3515574..3516608	-	344	117926085	-	Mmc1_2803	-	hypothetical protein
2768	 59.02	+1	3516614..3516979	-	121	117926086	-	Mmc1_2804	-	putative transmembrane protein
2769	 59.83	+1	3516987..3520538	-	1183	117926087	-	Mmc1_2805	-	TP901 family phage tail tape measure protein
2770	 45.41	-2	3520619..3521173	+	184	117926088	-	Mmc1_2806	-	hypothetical protein
2771	 54.74	0	3521269..3521637	-	122	117926089	-	Mmc1_2807	-	hypothetical protein
2772	 55.60	0	3521643..3522383	-	246	117926090	-	Mmc1_2808	-	hypothetical protein
2773	 54.07	0	3522619..3523023	-	134	117926091	-	Mmc1_2809	-	hypothetical protein
2774	 57.26	0	3523025..3523396	-	123	117926092	-	Mmc1_2810	-	hypothetical protein
2775	 56.75	0	3523399..3524316	-	305	117926093	-	Mmc1_2811	-	hypothetical protein
2776	 56.20	0	3524328..3524585	-	85	117926094	-	Mmc1_2812	-	hypothetical protein
2777	 59.12	+1	3524588..3524905	-	105	117926095	-	Mmc1_2813	-	hypothetical protein
2778	 56.80	0	3524908..3525921	-	337	117926096	-	Mmc1_2814	-	hypothetical protein
2779	 60.21	+1	3525924..3526589	-	221	117926097	-	Mmc1_2815	-	putative phage protein GP19
2780	 58.99	+1	3526607..3527908	-	433	117926098	-	Mmc1_2816	-	serine peptidase
2781	 42.41	-2	3527964..3528437	+	157	117926099	-	Mmc1_2817	-	response regulator receiver protein
2782	 58.38	0	3528504..3529988	-	494	117926100	-	Mmc1_2818	-	lambda family phage portal protein
2783	 56.34	0	3529988..3530200	-	70	117926101	-	Mmc1_2819	-	hypothetical protein
2784	 58.00	0	3530523..3532379	-	618	117926102	-	Mmc1_2820	-	phage terminase GpA
2785	 53.03	0	3532476..3532673	+	65	117926103	-	Mmc1_2821	-	hypothetical protein
2786	 54.43	0	3532700..3533083	+	127	117926104	-	Mmc1_2822	-	hypothetical protein
2787	 56.37	0	3533136..3533834	+	232	117926105	-	Mmc1_2823	-	hypothetical protein
2788	 55.07	0	3533898..3534173	-	91	117926106	-	Mmc1_2824	-	nucleoid protein Hbs
2789	 58.65	+1	3534266..3535612	-	448	117926107	-	Mmc1_2825	-	nuclease
2790	 60.87	+1	3535605..3536156	-	183	117926108	-	Mmc1_2826	-	hypothetical protein
2791	 49.15	-1	3536248..3537126	-	292	117926109	-	Mmc1_2827	-	HNH nuclease
2792	 50.79	0	3537258..3537509	+	83	117926110	-	Mmc1_2828	-	CopG/Arc/MetJ family transcriptional regulator
2793	 49.19	-1	3537506..3537814	+	102	117926111	-	Mmc1_2829	-	plasmid stabilization system protein
2794	 55.17	0	3537816..3538415	-	199	117926112	-	Mmc1_2830	-	hypothetical protein
2795	 60.00	+1	3539137..3539436	-	99	117926113	-	Mmc1_2831	-	hypothetical protein
2796	 51.85	0	3539433..3539621	-	62	117926114	-	Mmc1_2832	-	hypothetical protein
2797	 56.89	0	3539624..3540022	-	132	117926115	-	Mmc1_2833	-	peptidase M15A
2798	 42.40	-2	3540508..3541257	+	249	117926116	-	Mmc1_2834	-	hemerythrin-like metal-binding protein
54.32	MEAN

4.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.