IslandPathversion 1.0

IslandPath Analysis: Magnetococcus sp. MC-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.32 STD DEV: 4.16
Magnetococcus sp. MC-1, complete genome - 1..4719581
3716 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2503	 52.48	0	3223243..3223524	-	93	117925821	-	Mmc1_2532	-	hypothetical protein
2504	 52.92	0	3223721..3224062	-	113	117925822	-	Mmc1_2533	-	alkylphosphonate utilization operon protein PhnA
2505	 56.80	0	3224261..3224635	-	124	117925823	-	Mmc1_2534	-	hypothetical protein
2506	 53.99	0	3224855..3225856	+	333	117925824	-	Mmc1_2535	-	ABC-type nitrate/sulfonate/bicarbonate transport system protein
2507	 53.20	0	3225853..3228258	+	801	117925825	-	Mmc1_2536	-	multi-sensor hybrid histidine kinase
2508	 57.07	0	3228529..3229716	+	395	117925826	-	Mmc1_2537	-	major facilitator transporter
2509	 55.80	0	3230045..3230458	+	137	117925827	-	Mmc1_2538	-	hypothetical protein
2510	 47.93	-1	3230518..3230928	+	136	117925828	-	Mmc1_2539	-	hypothetical protein
2511	 47.14	-1	3230928..3231224	+	98	117925829	-	Mmc1_2540	-	hypothetical protein
2512	 57.81	0	3231760..3233994	+	744	117925830	-	Mmc1_2541	-	DNA topoisomerase III
2513	 51.19	0	3234137..3235144	-	335	117925831	-	Mmc1_2542	-	TRAP dicarboxylate transporter- DctP subunit
2514	 50.44	0	3235157..3237295	-	712	117925832	-	Mmc1_2543	-	adenylate/guanylate cyclase
2515	 42.03	-2	3237919..3238401	+	160	117925833	-	Mmc1_2544	-	BLUF domain-containing protein
2516	 57.38	0	3238825..3252180	-	4451	117925834	-	Mmc1_2545	-	hemolysin-type calcium-binding region
2517	 48.42	-1	3252461..3252745	-	94	117925835	-	Mmc1_2546	-	IstB-like ATP-binding protein
2518	 50.16	-1	3253220..3254164	-	314	117925836	-	Mmc1_2547	-	hypothetical protein
2519	 52.73	0	3254207..3255232	+	341	117925837	-	Mmc1_2548	-	integrase catalytic subunit
2520	 50.39	0	3255517..3256683	+	388	117925838	-	Mmc1_2549	-	adenylylsulfate kinase
2521	 50.77	0	3256683..3258695	+	670	117925839	-	Mmc1_2550	-	TPR repeat-containing protein
2522	 51.85	0	3259207..3260259	-	350	117925840	-	Mmc1_2551	-	integrase catalytic subunit
2523	 53.40	0	3260331..3261536	+	401	117925841	-	Mmc1_2552	-	transposase, mutator type
2524	 49.75	-1	3262259..3262459	-	66	117925842	-	Mmc1_2554	-	hypothetical protein
2525	 61.58	+1	3262461..3263837	-	458	117925843	-	Mmc1_2555	-	hypothetical protein
2526	 59.63	+1	3263834..3264970	-	378	117925844	-	Mmc1_2556	-	hypothetical protein
2527	 55.30	0	3264974..3265360	-	128	117925845	-	Mmc1_2557	-	hypothetical protein
2528	 53.95	0	3265372..3265890	-	172	117925846	-	Mmc1_2558	-	hypothetical protein
2529	 58.00	0	3265868..3266848	-	326	117925847	-	Mmc1_2559	-	hypothetical protein
2530	 57.29	0	3266854..3267888	-	344	117925848	-	Mmc1_2560	-	hypothetical protein
2531	 58.47	0	3267891..3268256	-	121	117925849	-	Mmc1_2561	-	putative transmembrane protein
2532	 59.88	+1	3268264..3271815	-	1183	117925850	-	Mmc1_2562	-	TP901 family phage tail tape measure protein
2533	 51.38	0	3271862..3272188	+	108	117925851	-	Mmc1_2563	-	hypothetical protein
2534	 51.43	0	3272181..3272495	+	104	117925852	-	Mmc1_2564	-	XRE family transcriptional regulator
2535	 56.49	0	3272564..3272956	-	130	117925853	-	Mmc1_2565	-	hypothetical protein
2536	 54.93	0	3272962..3273702	-	246	117925854	-	Mmc1_2566	-	hypothetical protein
2537	 52.55	0	3273708..3274118	-	136	117925855	-	Mmc1_2567	-	hypothetical protein
2538	 57.80	0	3274120..3274491	-	123	117925856	-	Mmc1_2568	-	hypothetical protein
2539	 56.86	0	3274494..3275411	-	305	117925857	-	Mmc1_2569	-	hypothetical protein
2540	 55.43	0	3275423..3275680	-	85	117925858	-	Mmc1_2570	-	hypothetical protein
2541	 60.38	+1	3275683..3276000	-	105	117925859	-	Mmc1_2571	-	hypothetical protein
2542	 56.90	0	3276003..3277016	-	337	117925860	-	Mmc1_2572	-	hypothetical protein
2543	 59.31	+1	3277019..3277684	-	221	117925861	-	Mmc1_2573	-	putative phage protein GP19
2544	 58.79	+1	3277699..3278955	-	418	117925862	-	Mmc1_2574	-	serine peptidase
2545	 48.26	-1	3279057..3279344	+	95	117925863	-	Mmc1_2575	-	addiction module antitoxin
2546	 58.65	+1	3279623..3281107	-	494	117925864	-	Mmc1_2576	-	lambda family phage portal protein
2547	 52.14	0	3281107..3281340	-	77	117925865	-	Mmc1_2577	-	hypothetical protein
2548	 51.77	0	3281358..3281639	+	93	117925866	-	Mmc1_2578	-	hypothetical protein
2549	 58.27	0	3281640..3283496	-	618	117925867	-	Mmc1_2579	-	phage terminase GpA
2550	 56.06	0	3283591..3283788	+	65	117925868	-	Mmc1_2580	-	hypothetical protein
2551	 55.13	0	3284251..3284952	+	233	117925869	-	Mmc1_2581	-	hypothetical protein
2552	 52.91	0	3285052..3285240	+	62	117925870	-	Mmc1_2582	-	hypothetical protein
2553	 58.20	0	3285274..3286632	-	452	117925871	-	Mmc1_2583	-	nuclease
2554	 59.04	+1	3286625..3287188	-	187	117925872	-	Mmc1_2584	-	hypothetical protein
2555	 45.08	-2	3287476..3288156	+	226	117925873	-	Mmc1_2585	-	hypothetical protein
2556	 52.43	0	3288203..3289438	+	411	117925874	-	Mmc1_2586	-	hypothetical protein
2557	 60.30	+1	3289431..3290498	+	355	117925875	-	Mmc1_2587	-	putative transposase
2558	 51.23	0	3290529..3290813	+	94	117925876	-	Mmc1_2588	-	hypothetical protein
2559	 51.84	0	3291103..3292215	+	370	117925877	-	Mmc1_2589	-	glycosyl transferase, group 1
2560	 50.94	0	3292199..3293107	-	302	117925878	-	Mmc1_2590	-	hypothetical protein
2561	 54.06	0	3293437..3294126	-	229	117925879	-	Mmc1_2591	-	hypothetical protein
2562	 47.53	-1	3294156..3294986	-	276	117925880	-	Mmc1_2592	-	integrase catalytic subunit
2563	 52.19	0	3295180..3296643	-	487	117925881	-	Mmc1_2594	-	hypothetical protein
2564	 52.44	0	3296914..3298059	+	381	117925882	-	Mmc1_2596	-	transposase IS66
2565	 55.39	0	3298420..3298827	-	135	117925883	-	Mmc1_2598	-	hypothetical protein
2566	 59.82	+1	3298820..3299038	-	72	117925884	-	Mmc1_2599	-	hypothetical protein
2567	 59.68	+1	3299035..3299535	-	166	117925885	-	Mmc1_2600	-	hypothetical protein
2568	 55.17	0	3299888..3302026	-	712	117925886	-	Mmc1_2601	-	TOPRIM domain-containing protein
2569	 54.35	0	3302023..3302793	-	256	117925887	-	Mmc1_2602	-	hypothetical protein
2570	 54.78	0	3302786..3303298	-	170	117925888	-	Mmc1_2603	-	hypothetical protein
2571	 54.89	0	3303295..3304500	-	401	117925889	-	Mmc1_2604	-	MT-A70 family protein
2572	 57.08	0	3304516..3304953	-	145	117925890	-	Mmc1_2605	-	hypothetical protein
2573	 55.73	0	3304953..3306635	-	560	117925891	-	Mmc1_2606	-	type III restriction enzyme, res subunit
2574	 55.24	0	3306653..3307291	-	212	117925892	-	Mmc1_2607	-	hypothetical protein
2575	 60.13	+1	3307297..3308199	-	300	117925893	-	Mmc1_2608	-	hypothetical protein
2576	 51.49	0	3308196..3308999	-	267	117925894	-	Mmc1_2609	-	hypothetical protein
2577	 50.61	0	3308983..3309636	-	217	117925895	-	Mmc1_2610	-	ECF subfamily RNA polymerase sigma-24 factor
2578	 52.70	0	3309902..3311011	-	369	117925896	-	Mmc1_2611	-	hypothetical protein
2579	 51.05	0	3311008..3312249	-	413	117925897	-	Mmc1_2612	-	hypothetical protein
2580	 51.77	0	3312324..3312974	-	216	117925898	-	Mmc1_2613	-	hypothetical protein
2581	 50.26	0	3312979..3313362	-	127	117925899	-	Mmc1_2614	-	XRE family transcriptional regulator
2582	 47.69	-1	3313541..3313756	+	71	117925900	-	Mmc1_2615	-	hypothetical protein
2583	 58.39	0	3313746..3314180	+	144	117925901	-	Mmc1_2616	-	hypothetical protein
2584	 54.48	0	3314177..3315514	+	445	117925902	-	Mmc1_2617	-	resolvase domain-containing protein
2585	 52.90	0	3315514..3315927	+	137	117925903	-	Mmc1_2618	-	hypothetical protein
2586	 37.52	-2	3316282..3318285	+	667	117925904	-	Mmc1_2619	-	histidine kinase
2587	 52.26	0	3318720..3320267	-	515	117925905	-	Mmc1_2620	-	transposase IS66
2588	 47.22	-1	3320302..3320661	-	119	117925906	-	Mmc1_2621	-	IS66 Orf2 family protein
2589	 49.57	-1	3320658..3321008	-	116	117925907	-	Mmc1_2622	-	hypothetical protein
2590	 50.77	0	3321224..3322192	-	322	117925908	-	Mmc1_2623	-	hypothetical protein
2591	 52.65	0	3322235..3322705	+	156	117925909	-	Mmc1_2624	-	hypothetical protein
2592	 50.87	0	3322714..3323175	+	153	117925910	-	Mmc1_2625	-	transposase, IS3
2593	 52.84	0	3323649..3323930	+	93	117925911	-	Mmc1_2626	-	putative transposase
2594	 51.78	0	3324318..3325385	+	355	117925912	-	Mmc1_2627	-	hypothetical protein
2595	 52.63	0	3325750..3326091	+	113	117925913	-	Mmc1_2628	-	hypothetical protein
2596	 50.00	-1	3326091..3326450	+	119	117925914	-	Mmc1_2629	-	IS66 Orf2 family protein
2597	 52.81	0	3326486..3328066	+	526	117925915	-	Mmc1_2630	-	transposase IS66
2598	 54.78	0	3328080..3329543	+	487	117925916	-	Mmc1_2631	-	transposase, IS4 family protein
2599	 52.28	0	3329598..3331064	-	488	117925917	-	Mmc1_2632	-	transposase IS66
2600	 50.00	-1	3331100..3331459	-	119	117925918	-	Mmc1_2633	-	IS66 Orf2 family protein
2601	 52.92	0	3331459..3331800	-	113	117925919	-	Mmc1_2634	-	hypothetical protein
2602	 55.01	0	3331825..3332613	-	262	117925920	-	Mmc1_2635	-	CheB methylesterase
54.32	MEAN

4.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.