IslandPathversion 1.0

IslandPath Analysis: Magnetococcus sp. MC-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.32 STD DEV: 4.16
Magnetococcus sp. MC-1, complete genome - 1..4719581
3716 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2233	 42.47	-2	2890609..2890827	+	72	117925551	-	Mmc1_2261	-	hypothetical protein
2234	 48.19	-1	2890845..2891672	+	275	117925552	-	Mmc1_2262	-	metal dependent phosphohydrolase
2235	 57.58	0	2892503..2892766	-	87	117925553	-	Mmc1_2263	-	hypothetical protein
2236	 50.52	0	2892989..2894146	-	385	117925554	-	Mmc1_2264	-	hypothetical protein
2237	 52.24	0	2894233..2894634	-	133	117925555	-	Mmc1_2265	-	hypothetical protein
2238	 54.86	0	2895338..2899090	-	1250	117925556	-	Mmc1_2266	-	hypothetical protein
2239	 55.14	0	2899162..2901573	-	803	117925557	-	Mmc1_2267	-	peptidase S1 and S6, chymotrypsin/Hap
2240	 54.11	0	2901580..2901810	-	76	117925558	-	Mmc1_2268	-	hypothetical protein
2241	 50.31	0	2902079..2903362	-	427	117925559	-	Mmc1_2269	-	major facilitator transporter
2242	 56.20	0	2903566..2903976	-	136	117925560	-	Mmc1_2270	-	hypothetical protein
2243	 43.41	-2	2904088..2904504	-	138	117925561	-	Mmc1_2271	-	hypothetical protein
2244	 52.26	0	2904515..2905861	-	448	117925562	-	Mmc1_2272	-	amino acid carrier protein
2245	 48.95	-1	2906035..2906367	+	110	117925563	-	Mmc1_2273	-	hypothetical protein
2246	 50.30	0	2906450..2906785	-	111	117925564	-	Mmc1_2274	-	hypothetical protein
2247	 58.97	+1	2906800..2907384	-	194	117925565	-	Mmc1_2275	-	cell wall protein TIR3 precursor
2248	 47.26	-1	2908003..2908440	+	145	117925566	-	Mmc1_2276	-	cyclic nucleotide-binding protein
2249	 50.84	0	2908571..2909764	+	397	117925567	-	Mmc1_2277	-	Na+/H+ antiporter NhaA
2250	 44.51	-2	2909977..2911050	+	357	117925568	-	Mmc1_2278	-	periplasmic sensor signal transduction histidine kinase
2251	 53.07	0	2911336..2911563	-	75	117925569	-	Mmc1_2279	-	hypothetical protein
2252	 51.85	0	2911801..2912232	+	143	117925570	-	Mmc1_2280	-	rhodanese domain-containing protein
2253	 57.29	0	2912287..2913321	-	344	117925571	-	Mmc1_2281	-	hypothetical protein
2254	 52.09	0	2913349..2915406	-	685	117925572	-	Mmc1_2282	-	PAS/PAC sensor hybrid histidine kinase
2255	 47.27	-1	2915451..2916110	-	219	117925573	-	Mmc1_2283	-	CheC, inhibitor of MCP methylation
2256	 48.36	-1	2916234..2916599	-	121	117925574	-	Mmc1_2284	-	response regulator receiver protein
2257	 53.56	0	2916799..2918553	+	584	117925575	-	Mmc1_2285	-	CheA signal transduction histidine kinases
2258	 51.15	0	2918745..2919311	-	188	117925576	-	Mmc1_2286	-	hypothetical protein
2259	 54.29	0	2919318..2920109	-	263	117925577	-	Mmc1_2287	-	ABC-2 type transporter
2260	 58.03	0	2920114..2921028	-	304	117925578	-	Mmc1_2288	-	ABC transporter related
2261	 52.32	0	2921188..2921682	-	164	117925579	-	Mmc1_2289	-	MucR family transcriptional regulator
2262	 55.11	0	2922312..2922683	-	123	117925580	-	Mmc1_2290	-	diacylglycerol kinase
2263	 54.84	0	2923206..2924000	+	264	117925581	-	Mmc1_2291	-	HAD family hydrolase
2264	 52.94	0	2924148..2925014	+	288	117925582	-	Mmc1_2292	-	endonuclease/exonuclease/phosphatase
2265	 55.62	0	2925071..2926174	+	367	117925583	-	Mmc1_2293	-	glycosyl transferase, group 1
2266	 56.30	0	2926268..2926894	-	208	117925584	-	Mmc1_2294	-	peptide methionine sulfoxide reductase
2267	 55.56	0	2926907..2927158	-	83	117925585	-	Mmc1_2295	-	hypothetical protein
2268	 58.21	0	2927151..2928179	-	342	117925586	-	Mmc1_2296	-	Sel1 domain-containing protein
2269	 53.75	0	2928425..2929879	+	484	117925587	-	Mmc1_2297	-	putative PAS/PAC sensor protein
2270	 55.28	0	2931124..2931720	+	198	117925588	-	Mmc1_2299	-	putative phosphoheptose isomerase
2271	 56.41	0	2931757..2932887	-	376	117925589	-	Mmc1_2300	-	YibE/F family protein
2272	 50.81	0	2932901..2933209	-	102	117925590	-	Mmc1_2301	-	hypothetical protein
2273	 50.36	0	2933669..2934361	+	230	117925591	-	Mmc1_2302	-	XRE family transcriptional regulator
2274	 53.93	0	2934722..2935852	+	376	117925592	-	Mmc1_2303	-	hypothetical protein
2275	 45.47	-2	2936200..2936652	+	150	117925593	-	Mmc1_2304	-	response regulator receiver protein
2276	 54.34	0	2936683..2937672	+	329	117925594	-	Mmc1_2305	-	cobalamin synthesis protein, P47K
2277	 54.93	0	2937632..2938270	-	212	117925595	-	Mmc1_2306	-	Hpt protein
2278	 54.38	0	2938267..2939259	-	330	117925596	-	Mmc1_2307	-	response regulator receiver protein
2279	 53.81	0	2939256..2941790	-	844	117925597	-	Mmc1_2308	-	periplasmic sensor hybrid histidine kinase
2280	 52.08	0	2941843..2942925	-	360	117925598	-	Mmc1_2309	-	extracellular solute-binding protein
2281	 65.22	+2	2943003..2943623	-	206	117925599	-	Mmc1_2310	-	pilin glycosylation protein PglB
2282	 58.53	+1	2943627..2944253	-	208	117925600	-	Mmc1_2311	-	phosphoheptose isomerase
2283	 60.78	+1	2944386..2945183	-	265	117925601	-	Mmc1_2312	-	hypothetical protein
2284	 57.39	0	2945263..2946006	-	247	117925602	-	Mmc1_2313	-	regulatory inactivation of DnaA Hda protein
2285	 52.84	0	2946006..2946569	-	187	117925603	-	Mmc1_2314	-	CDP-alcohol phosphatidyltransferase
2286	 56.37	0	2946566..2947798	-	410	117925604	-	Mmc1_2315	-	hypothetical protein
2287	 56.12	0	2947979..2949040	+	353	117925605	-	Mmc1_2316	-	phosphoribosylformylglycinamidine cyclo-ligase
2288	 56.26	0	2949037..2949699	+	220	117925606	-	Mmc1_2317	-	phosphoribosylglycinamide formyltransferase
2289	 65.68	+2	2949865..2950167	-	100	117925607	-	Mmc1_2318	-	hypothetical protein
2290	 56.31	0	2950168..2951277	-	369	117925608	-	Mmc1_2319	-	3-dehydroquinate synthase
2291	 58.31	0	2951328..2952332	-	334	117925609	-	Mmc1_2320	-	hypothetical protein
2292	 55.77	0	2952409..2954997	+	862	117925610	-	Mmc1_2321	-	1A family penicillin-binding protein
2293	 58.94	+1	2955313..2956515	+	400	117925611	-	Mmc1_2322	-	NnrS family protein
2294	 53.49	0	2957000..2957872	-	290	117925612	-	Mmc1_2323	-	RNA polymerase, sigma 32 subunit, RpoH
2295	 55.16	0	2958058..2958822	+	254	117925613	-	Mmc1_2324	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
2296	 60.00	+1	2958878..2959717	-	279	117925614	-	Mmc1_2325	-	dimethyladenosine transferase
2297	 60.42	+1	2959714..2960754	-	346	117925615	-	Mmc1_2326	-	4-hydroxythreonine-4-phosphate dehydrogenase
2298	 53.12	0	2960775..2962103	-	442	117925616	-	Mmc1_2327	-	PpiC-type peptidyl-prolyl cis-trans isomerase
2299	 52.38	0	2962367..2964655	-	762	117925617	-	Mmc1_2328	-	organic solvent tolerance protein
2300	 59.56	+1	2964791..2966071	-	426	117925618	-	Mmc1_2329	-	FolC bifunctional protein
2301	 55.13	0	2966076..2967020	-	314	117925619	-	Mmc1_2330	-	acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
2302	 59.87	+1	2967066..2967698	-	210	117925620	-	Mmc1_2331	-	phosphoribosylanthranilate isomerase
2303	 57.13	0	2967701..2968507	-	268	117925621	-	Mmc1_2332	-	indole-3-glycerol phosphate synthase
2304	 54.73	0	2968666..2969880	-	404	117925622	-	Mmc1_2333	-	tyrosyl-tRNA synthetase
2305	 60.14	+1	2969947..2971125	+	392	117925623	anmK	Mmc1_2334	-	anhydro-N-acetylmuramic acid kinase
2306	 54.07	0	2971169..2971549	-	126	117925624	apaG	Mmc1_2335	-	ApaG
2307	 54.57	0	2971696..2972100	+	134	117925625	-	Mmc1_2336	-	methionine-R-sulfoxide reductase
2308	 51.85	0	2972176..2972823	-	215	117925626	-	Mmc1_2337	-	methyl-accepting chemotaxis sensory transducer
2309	 50.00	-1	2973346..2973753	+	135	117925627	-	Mmc1_2338	-	hypothetical protein
2310	 52.99	0	2973753..2974739	+	328	117925628	-	Mmc1_2339	-	diguanylate cyclase
2311	 52.84	0	2974776..2975057	+	93	117925629	-	Mmc1_2340	-	ferredoxin, 2Fe-2S
2312	 55.06	0	2975471..2976004	+	177	117925630	-	Mmc1_2341	-	hypothetical protein
2313	 50.30	0	2976201..2977886	+	561	117925631	-	Mmc1_2342	-	response regulator receiver protein
2314	 52.17	0	2978141..2978740	-	199	117925632	-	Mmc1_2343	-	hypothetical protein
2315	 46.52	-1	2978927..2979199	-	90	117925633	-	Mmc1_2344	-	hypothetical protein
2316	 52.57	0	2979347..2980105	+	252	117925634	-	Mmc1_2345	-	two component transcriptional regulator
2317	 56.59	0	2980124..2982277	+	717	117925635	-	Mmc1_2346	-	periplasmic sensor signal transduction histidine kinase
2318	 56.88	0	2982755..2983663	+	302	117925636	-	Mmc1_2347	-	hypothetical protein
2319	 51.95	0	2983941..2984531	+	196	117925637	-	Mmc1_2348	-	hypothetical protein
2320	 55.90	0	2984587..2985069	+	160	117925638	-	Mmc1_2349	-	hypothetical protein
2321	 53.45	0	2985336..2985668	+	110	117925639	-	Mmc1_2350	-	hypothetical protein
2322	 51.08	0	2986248..2986754	-	168	117925640	-	Mmc1_2351	-	hypothetical protein
2323	 48.95	-1	2986751..2988184	-	477	117925641	-	Mmc1_2352	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
2324	 51.59	0	2988578..2989996	+	472	117925642	-	Mmc1_2353	-	cytochrome c oxidase, cbb3-type, subunit I
2325	 49.86	-1	2990035..2990772	+	245	117925643	-	Mmc1_2354	-	cytochrome c oxidase, cbb3-type, subunit II
2326	 51.58	0	2990808..2991722	+	304	117925644	-	Mmc1_2355	-	cytochrome c oxidase, cbb3-type, subunit III
2327	 51.36	0	2991783..2992076	+	97	117925645	-	Mmc1_2356	-	hypothetical protein
2328	 47.40	-1	2992184..2992567	+	127	117925646	-	Mmc1_2357	-	hypothetical protein
2329	 50.97	0	2992572..2994266	+	564	117925647	-	Mmc1_2358	-	TrkA domain-containing protein
2330	 47.47	-1	2994427..2994624	-	65	117925648	-	Mmc1_2359	-	cytochrome oxidase maturation protein, cbb3-type
2331	 57.47	0	2994824..2997280	-	818	117925649	-	Mmc1_2360	-	heavy metal translocating P-type ATPase
2332	 58.38	0	2997292..2997810	-	172	117925650	-	Mmc1_2361	-	RND multidrug efflux membrane fusion protein MexE precursor
54.32	MEAN

4.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.