IslandPathversion 1.0

IslandPath Analysis: Magnetococcus sp. MC-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.32 STD DEV: 4.16
Magnetococcus sp. MC-1, complete genome - 1..4719581
3716 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2067	 54.63	0	2567618..2568805	-	395	117925385	-	Mmc1_2095	-	hypothetical protein
2068	 55.60	0	2569631..2570443	-	270	117925386	-	Mmc1_2096	-	undecaprenyl-diphosphatase
2069	 60.27	+1	2570533..2570751	+	72	117925387	-	Mmc1_2097	-	heavy metal transport/detoxification protein
2070	 57.69	0	2570853..2571665	-	270	117925388	-	Mmc1_2098	-	tRNA pseudouridine synthase A
2071	 55.42	0	2571730..2572227	-	165	117925389	-	Mmc1_2099	-	hypothetical protein
2072	 51.55	0	2572502..2573275	+	257	117925390	-	Mmc1_2100	-	cobyrinic acid a,c-diamide synthase
2073	 50.00	-1	2573441..2573812	+	123	117925391	-	Mmc1_2101	-	hypothetical protein
2074	 58.70	+1	2573962..2574852	-	296	117925392	cysM	Mmc1_2102	-	cysteine synthase B
2075	 59.97	+1	2574955..2575596	+	213	117925393	-	Mmc1_2103	-	ABC transporter related
2076	 58.21	0	2575593..2576396	+	267	117925394	-	Mmc1_2104	-	hypothetical protein
2077	 60.53	+1	2576772..2577488	+	238	117925395	-	Mmc1_2105	-	SOS mutagenesis protein UmuD
2078	 59.72	+1	2577490..2578755	+	421	117925396	-	Mmc1_2106	-	DNA-directed DNA polymerase
2079	 58.28	0	2578855..2580369	-	504	117925397	-	Mmc1_2107	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
2080	 60.36	+1	2580371..2581369	-	332	117925398	-	Mmc1_2108	-	hypothetical protein
2081	 58.11	0	2581366..2582253	-	295	117925399	-	Mmc1_2109	-	hypothetical protein
2082	 54.91	0	2582331..2583521	-	396	117925400	-	Mmc1_2110	-	aldo/keto reductase
2083	 45.58	-2	2583893..2584831	+	312	117925401	-	Mmc1_2111	-	hypothetical protein
2084	 49.88	-1	2584844..2588929	+	1361	117925402	-	Mmc1_2112	-	Cache sensor hybrid histidine kinase
2085	 50.53	0	2588926..2590623	+	565	117925403	-	Mmc1_2113	-	MCP methyltransferase, CheR-type
2086	 49.33	-1	2590637..2592661	+	674	117925404	-	Mmc1_2114	-	PAS/PAC sensor hybrid histidine kinase
2087	 55.51	0	2592721..2593437	+	238	117925405	-	Mmc1_2115	-	RNase HI
2088	 50.00	-1	2594386..2595393	-	335	117925406	-	Mmc1_2116	-	NAD-dependent epimerase/dehydratase
2089	 57.05	0	2595431..2596189	-	252	117925407	-	Mmc1_2117	-	3-deoxy-D-manno-octulosonate cytidylyltransferase
2090	 51.23	0	2596396..2598558	-	720	117925408	-	Mmc1_2118	-	methyl-accepting chemotaxis sensory transducer
2091	 54.83	0	2599787..2601349	+	520	117925409	pntA	Mmc1_2119	-	NAD(P) transhydrogenase subunit alpha
2092	 54.49	0	2601383..2602786	+	467	117925410	-	Mmc1_2120	-	NAD(P) transhydrogenase, beta subunit
2093	 53.03	0	2602898..2603227	-	109	117925411	-	Mmc1_2121	-	histone family protein DNA-binding protein
2094	 55.83	0	2603375..2603974	+	199	117925412	-	Mmc1_2122	-	ATPases involved in chromosome partitioning-like protein
2095	 54.86	0	2604216..2604596	+	126	117925413	-	Mmc1_2123	-	ankyrin
2096	 58.69	+1	2604853..2605755	-	300	117925414	-	Mmc1_2124	-	dTDP-4-dehydrorhamnose reductase
2097	 54.49	0	2606241..2608220	+	659	117925415	-	Mmc1_2125	-	ABC transporter related
2098	 51.50	0	2608332..2609030	-	232	117925416	-	Mmc1_2126	-	peptidylprolyl isomerase, FKBP-type
2099	 50.72	0	2609305..2609580	-	91	117925417	-	Mmc1_2127	-	histone family protein DNA-binding protein
2100	 48.15	-1	2610803..2611072	+	89	117925418	-	Mmc1_2128	-	insertion element protein
2101	 52.28	0	2611504..2612754	-	416	117925419	-	Mmc1_2129	-	N-acetylmuramoyl-L-alanine amidase
2102	 52.62	0	2613015..2613740	+	241	117925420	-	Mmc1_2130	-	3-demethylubiquinone-9 3-methyltransferase
2103	 56.90	0	2613899..2614318	-	139	117925421	-	Mmc1_2131	-	hypothetical protein
2104	 56.86	0	2614333..2615331	+	332	117925422	-	Mmc1_2132	-	ribosomal large subunit pseudouridine synthase D
2105	 57.31	0	2615377..2615793	+	138	117925423	-	Mmc1_2133	-	hypothetical protein
2106	 53.05	0	2616366..2619251	+	961	117925424	-	Mmc1_2134	-	hypothetical protein
2107	 49.90	-1	2619515..2620009	-	164	117925425	-	Mmc1_2135	-	putative chemotaxis protein CheX
2108	 56.96	0	2620380..2621141	-	253	117925426	-	Mmc1_2136	-	phosphotransferase domain-containing protein
2109	 52.60	0	2621244..2622530	-	428	117925427	-	Mmc1_2137	-	TRAP dicarboxylate transporter, DctM subunit
2110	 52.12	0	2622527..2623069	-	180	117925428	-	Mmc1_2138	-	tripartite ATP-independent periplasmic transporter DctQ
2111	 51.17	0	2623170..2624195	-	341	117925429	-	Mmc1_2139	-	TRAP dicarboxylate transporter, DctP subunit
2112	 50.70	0	2624621..2625121	-	166	117925430	-	Mmc1_2140	-	thiol peroxidase (atypical 2-Cys peroxiredoxin)
2113	 54.68	0	2625347..2628616	-	1089	117925431	-	Mmc1_2141	-	hypothetical protein
2114	 52.13	0	2628826..2629341	-	171	117925432	-	Mmc1_2142	-	molybdenum cofactor guanylyltransferase
2115	 55.06	0	2629595..2630929	-	444	117925433	-	Mmc1_2143	-	peptidase M16 domain-containing protein
2116	 55.07	0	2630926..2632287	-	453	117925434	-	Mmc1_2144	-	peptidase M16 domain-containing protein
2117	 52.26	0	2632499..2632852	-	117	117925435	-	Mmc1_2145	-	hypothetical protein
2118	 53.12	0	2632900..2633379	-	159	117925436	-	Mmc1_2146	-	signal peptidase II
2119	 55.25	0	2633376..2636240	-	954	117925437	-	Mmc1_2147	-	isoleucyl-tRNA synthetase
2120	 55.52	0	2636290..2637213	-	307	117925438	-	Mmc1_2148	-	riboflavin kinase / FMN adenylyltransferase
2121	 53.32	0	2637781..2639691	+	636	117925439	-	Mmc1_2149	-	PpiC-type peptidyl-prolyl cis-trans isomerase
2122	 54.31	0	2639861..2640556	-	231	117925440	-	Mmc1_2150	-	membrane-bound metal-dependent hydrolase
2123	 53.44	0	2640766..2642889	-	707	117925441	-	Mmc1_2151	-	methyl-accepting chemotaxis sensory transducer
2124	 56.15	0	2642936..2644381	-	481	117925442	-	Mmc1_2152	-	hypothetical protein
2125	 52.62	0	2644487..2646280	+	597	117925443	-	Mmc1_2153	-	extracellular solute-binding protein
2126	 52.71	0	2646288..2647340	+	350	117925444	-	Mmc1_2154	-	binding-protein-dependent transport systems inner membrane component
2127	 53.69	0	2647464..2648696	-	410	117925445	-	Mmc1_2155	-	hypothetical protein
2128	 53.43	0	2649195..2650403	+	402	117925446	-	Mmc1_2156	-	sulfite reductase, dissimilatory-type alpha subunit
2129	 54.38	0	2650467..2651540	+	357	117925447	-	Mmc1_2157	-	sulfite reductase, dissimilatory-type beta subunit
2130	 51.42	0	2651565..2653322	+	585	117925448	-	Mmc1_2158	-	putative glutamate synthase (NADPH) small subunit
2131	 46.77	-1	2653456..2653857	+	133	117925449	-	Mmc1_2159	-	hypothetical protein
2132	 49.75	-1	2654129..2654524	+	131	117925450	-	Mmc1_2160	-	hypothetical protein
2133	 50.27	0	2654677..2655048	+	123	117925451	-	Mmc1_2161	-	pterin-4-alpha-carbinolamine dehydratase
2134	 62.89	+2	2655487..2658633	-	1048	117925452	-	Mmc1_2162	-	TPR repeat-containing protein
2135	 55.29	0	2658672..2659550	-	292	117925453	-	Mmc1_2163	-	hypothetical protein
2136	 50.57	0	2659879..2660928	+	349	117925454	-	Mmc1_2164	-	radical SAM domain-containing protein
2137	 50.20	0	2661111..2663612	+	833	117925455	-	Mmc1_2165	-	hypothetical protein
2138	 51.66	0	2663664..2664656	+	330	117925456	-	Mmc1_2166	-	NAD-dependent epimerase/dehydratase
2139	 47.98	-1	2664917..2665312	+	131	117925457	-	Mmc1_2167	-	hypothetical protein
2140	 50.98	0	2665524..2665982	-	152	117925458	-	Mmc1_2168	-	hypothetical protein
2141	 55.20	0	2665986..2667791	-	601	117925459	-	Mmc1_2169	-	peptidase M3A and M3B, thimet/oligopeptidase F
2142	 54.20	0	2667784..2668521	-	245	117925460	-	Mmc1_2170	-	NUDIX hydrolase
2143	 48.44	-1	2668525..2669199	-	224	117925461	-	Mmc1_2171	-	hypothetical protein
2144	 55.26	0	2669274..2677778	-	2834	117925462	-	Mmc1_2172	-	filamentous haemagglutinin outer membrane protein
2145	 54.64	0	2677797..2679875	-	692	117925463	-	Mmc1_2173	-	polypeptide-transport-associated domain-containing protein
2146	 54.20	0	2679989..2680774	-	261	117925464	-	Mmc1_2174	-	hypothetical protein
2147	 58.73	+1	2680780..2682756	-	658	117925465	secA	Mmc1_2175	-	preprotein translocase subunit SecA
2148	 55.36	0	2682761..2684926	-	721	117925466	-	Mmc1_2176	-	M50 family peptidase
2149	 57.95	0	2684929..2686764	-	611	117925467	-	Mmc1_2177	-	GAF domain-containing protein
2150	 49.33	-1	2686855..2687154	-	99	117925468	-	Mmc1_2178	-	hypothetical protein
2151	 55.65	0	2687182..2731932	-	14916	117925469	-	Mmc1_2179	-	putative outer membrane adhesin like proteiin
2152	 54.40	0	2732270..2734894	-	874	117925470	-	Mmc1_2180	-	TolC family type I secretion outer membrane protein
2153	 47.44	-1	2735211..2735933	-	240	117925471	-	Mmc1_2181	-	SapC family protein
2154	 47.44	-1	2736875..2737186	+	103	117925472	-	Mmc1_2182	-	hypothetical protein
2155	 52.13	0	2738013..2738459	+	148	117925473	-	Mmc1_2183	-	hypothetical protein
2156	 52.88	0	2738842..2740422	-	526	117925474	-	Mmc1_2184	-	transposase IS66
2157	 50.56	0	2740458..2740817	-	119	117925475	-	Mmc1_2185	-	IS66 Orf2 family protein
2158	 50.88	0	2740817..2741158	-	113	117925476	-	Mmc1_2186	-	hypothetical protein
2159	 51.29	0	2741262..2742269	-	335	117925477	-	Mmc1_2187	-	hypothetical protein
2160	 40.40	-2	2742594..2742947	-	117	117925478	-	Mmc1_2188	-	anti-sigma-factor antagonist
2161	 51.63	0	2743606..2743851	+	81	117925479	-	Mmc1_2189	-	FeoA family protein
2162	 52.94	0	2744351..2745931	-	526	117925480	-	Mmc1_2190	-	transposase IS66
2163	 50.56	0	2745967..2746326	-	119	117925481	-	Mmc1_2191	-	IS66 Orf2 family protein
2164	 50.88	0	2746326..2746667	-	113	117925482	-	Mmc1_2192	-	hypothetical protein
2165	 50.41	0	2747549..2749375	+	608	117925483	-	Mmc1_2193	-	sulfate transporter
2166	 54.27	0	2749883..2752543	-	886	117925484	-	Mmc1_2194	-	pyruvate phosphate dikinase
54.32	MEAN

4.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.