IslandPathversion 1.0

IslandPath Analysis: Magnetococcus sp. MC-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.32 STD DEV: 4.16
Magnetococcus sp. MC-1, complete genome - 1..4719581
3716 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2021	 56.81	0	2531426..2531638	-	70	117925339	-	Mmc1_2049	-	hypothetical protein
2022	 57.78	0	2531961..2533817	-	618	117925340	-	Mmc1_2050	-	phage terminase GpA
2023	 55.05	0	2533912..2534109	+	65	117925341	-	Mmc1_2051	-	hypothetical protein
2024	 54.17	0	2534136..2534519	+	127	117925342	-	Mmc1_2052	-	hypothetical protein
2025	 55.85	0	2534572..2535246	+	224	117925343	-	Mmc1_2053	-	hypothetical protein
2026	 55.07	0	2535310..2535585	-	91	117925344	-	Mmc1_2054	-	histone family protein DNA-binding protein
2027	 58.72	+1	2535678..2537024	-	448	117925345	-	Mmc1_2055	-	nuclease
2028	 59.57	+1	2537017..2537580	-	187	117925346	-	Mmc1_2056	-	hypothetical protein
2029	 48.65	-1	2537670..2538557	-	295	117925347	-	Mmc1_2057	-	HNH nuclease
2030	 50.79	0	2538689..2538940	+	83	117925348	-	Mmc1_2058	-	CopG/Arc/MetJ family transcriptional regulator
2031	 48.87	-1	2538937..2539245	+	102	117925349	-	Mmc1_2059	-	plasmid stabilization system protein
2032	 58.46	0	2539247..2539843	-	198	117925350	-	Mmc1_2060	-	hypothetical protein
2033	 60.94	+1	2539840..2540136	-	98	117925351	-	Mmc1_2061	-	hypothetical protein
2034	 56.08	0	2540133..2540321	-	62	117925352	-	Mmc1_2062	-	hypothetical protein
2035	 48.55	-1	2540424..2540699	+	91	117925353	-	Mmc1_2063	-	histone family protein DNA-binding protein
2036	 56.14	0	2540702..2541100	-	132	117925354	-	Mmc1_2064	-	peptidase M15A
2037	 50.55	0	2541281..2542012	-	243	117925355	-	Mmc1_2065	-	deoxyribonuclease I
2038	 51.20	0	2542030..2542320	-	96	117925356	-	Mmc1_2066	-	histone family protein DNA-binding protein
2039	 57.64	0	2542455..2542853	-	132	117925357	-	Mmc1_2067	-	hypothetical protein
2040	 57.53	0	2542846..2543064	-	72	117925358	-	Mmc1_2068	-	hypothetical protein
2041	 59.48	+1	2543061..2543561	-	166	117925359	-	Mmc1_2069	-	putative bacteriophage-related protein
2042	 55.70	0	2544225..2546375	-	716	117925360	-	Mmc1_2070	-	TOPRIM domain-containing protein
2043	 56.50	0	2546372..2547148	-	258	117925361	-	Mmc1_2071	-	hypothetical protein
2044	 51.04	0	2547145..2547867	-	240	117925362	-	Mmc1_2072	-	hypothetical protein
2045	 55.63	0	2547882..2548307	-	141	117925363	-	Mmc1_2073	-	hypothetical protein
2046	 54.55	0	2548307..2549989	-	560	117925364	-	Mmc1_2074	-	type III restriction enzyme, res subunit
2047	 49.25	-1	2549986..2550651	-	221	117925365	-	Mmc1_2075	-	hypothetical protein
2048	 53.33	0	2550663..2551307	-	214	117925366	-	Mmc1_2076	-	hypothetical protein
2049	 59.47	+1	2551313..2552215	-	300	117925367	-	Mmc1_2077	-	hypothetical protein
2050	 52.59	0	2552212..2552694	-	160	117925368	-	Mmc1_2078	-	hypothetical protein
2051	 51.97	0	2552735..2553673	-	312	117925369	-	Mmc1_2079	-	hypothetical protein
2052	 53.26	0	2553865..2554431	-	188	117925370	-	Mmc1_2080	-	sigma-24 (FecI-like)
2053	 53.13	0	2554718..2555116	-	132	117925371	-	Mmc1_2081	-	SOS-response transcriptional repressor, LexA
2054	 51.77	0	2555113..2556099	-	328	117925372	-	Mmc1_2082	-	hypothetical protein
2055	 51.09	0	2556146..2557339	-	397	117925373	-	Mmc1_2083	-	hypothetical protein
2056	 54.89	0	2557353..2558048	-	231	117925374	-	Mmc1_2084	-	SOS-response transcriptional repressor, LexA
2057	 50.51	0	2558234..2558629	+	131	117925375	-	Mmc1_2085	-	hypothetical protein
2058	 53.51	0	2558829..2559284	+	151	117925376	-	Mmc1_2086	-	hypothetical protein
2059	 54.39	0	2559281..2560624	+	447	117925377	-	Mmc1_2087	-	recombinase
2060	 55.80	0	2560621..2561034	+	137	117925378	-	Mmc1_2088	-	hypothetical protein
2061	 49.14	-1	2561059..2561754	-	231	117925379	-	Mmc1_2089	-	hypothetical protein
2062	 58.87	+1	2562578..2562808	-	76	117925380	-	Mmc1_2090	-	hypothetical protein
2063	 56.19	0	2562849..2563907	+	352	117925381	-	Mmc1_2091	-	hypothetical protein
2064	 50.83	0	2563904..2566429	+	841	117925382	-	Mmc1_2092	-	multi-sensor signal transduction histidine kinase
2065	 52.66	0	2566426..2567046	+	206	117925383	-	Mmc1_2093	-	two component LuxR family transcriptional regulator
2066	 53.33	0	2567296..2567610	+	104	117925384	-	Mmc1_2094	-	anti-sigma-factor antagonist
2067	 54.63	0	2567618..2568805	-	395	117925385	-	Mmc1_2095	-	hypothetical protein
2068	 55.60	0	2569631..2570443	-	270	117925386	-	Mmc1_2096	-	undecaprenyl-diphosphatase
2069	 60.27	+1	2570533..2570751	+	72	117925387	-	Mmc1_2097	-	heavy metal transport/detoxification protein
2070	 57.69	0	2570853..2571665	-	270	117925388	-	Mmc1_2098	-	tRNA pseudouridine synthase A
2071	 55.42	0	2571730..2572227	-	165	117925389	-	Mmc1_2099	-	hypothetical protein
2072	 51.55	0	2572502..2573275	+	257	117925390	-	Mmc1_2100	-	cobyrinic acid a,c-diamide synthase
2073	 50.00	-1	2573441..2573812	+	123	117925391	-	Mmc1_2101	-	hypothetical protein
2074	 58.70	+1	2573962..2574852	-	296	117925392	cysM	Mmc1_2102	-	cysteine synthase B
2075	 59.97	+1	2574955..2575596	+	213	117925393	-	Mmc1_2103	-	ABC transporter related
2076	 58.21	0	2575593..2576396	+	267	117925394	-	Mmc1_2104	-	hypothetical protein
2077	 60.53	+1	2576772..2577488	+	238	117925395	-	Mmc1_2105	-	SOS mutagenesis protein UmuD
2078	 59.72	+1	2577490..2578755	+	421	117925396	-	Mmc1_2106	-	DNA-directed DNA polymerase
2079	 58.28	0	2578855..2580369	-	504	117925397	-	Mmc1_2107	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
2080	 60.36	+1	2580371..2581369	-	332	117925398	-	Mmc1_2108	-	hypothetical protein
2081	 58.11	0	2581366..2582253	-	295	117925399	-	Mmc1_2109	-	hypothetical protein
2082	 54.91	0	2582331..2583521	-	396	117925400	-	Mmc1_2110	-	aldo/keto reductase
2083	 45.58	-2	2583893..2584831	+	312	117925401	-	Mmc1_2111	-	hypothetical protein
2084	 49.88	-1	2584844..2588929	+	1361	117925402	-	Mmc1_2112	-	Cache sensor hybrid histidine kinase
2085	 50.53	0	2588926..2590623	+	565	117925403	-	Mmc1_2113	-	MCP methyltransferase, CheR-type
2086	 49.33	-1	2590637..2592661	+	674	117925404	-	Mmc1_2114	-	PAS/PAC sensor hybrid histidine kinase
2087	 55.51	0	2592721..2593437	+	238	117925405	-	Mmc1_2115	-	RNase HI
2088	 50.00	-1	2594386..2595393	-	335	117925406	-	Mmc1_2116	-	NAD-dependent epimerase/dehydratase
2089	 57.05	0	2595431..2596189	-	252	117925407	-	Mmc1_2117	-	3-deoxy-D-manno-octulosonate cytidylyltransferase
2090	 51.23	0	2596396..2598558	-	720	117925408	-	Mmc1_2118	-	methyl-accepting chemotaxis sensory transducer
2091	 54.83	0	2599787..2601349	+	520	117925409	pntA	Mmc1_2119	-	NAD(P) transhydrogenase subunit alpha
2092	 54.49	0	2601383..2602786	+	467	117925410	-	Mmc1_2120	-	NAD(P) transhydrogenase, beta subunit
2093	 53.03	0	2602898..2603227	-	109	117925411	-	Mmc1_2121	-	histone family protein DNA-binding protein
2094	 55.83	0	2603375..2603974	+	199	117925412	-	Mmc1_2122	-	ATPases involved in chromosome partitioning-like protein
2095	 54.86	0	2604216..2604596	+	126	117925413	-	Mmc1_2123	-	ankyrin
2096	 58.69	+1	2604853..2605755	-	300	117925414	-	Mmc1_2124	-	dTDP-4-dehydrorhamnose reductase
2097	 54.49	0	2606241..2608220	+	659	117925415	-	Mmc1_2125	-	ABC transporter related
2098	 51.50	0	2608332..2609030	-	232	117925416	-	Mmc1_2126	-	peptidylprolyl isomerase, FKBP-type
2099	 50.72	0	2609305..2609580	-	91	117925417	-	Mmc1_2127	-	histone family protein DNA-binding protein
2100	 48.15	-1	2610803..2611072	+	89	117925418	-	Mmc1_2128	-	insertion element protein
2101	 52.28	0	2611504..2612754	-	416	117925419	-	Mmc1_2129	-	N-acetylmuramoyl-L-alanine amidase
2102	 52.62	0	2613015..2613740	+	241	117925420	-	Mmc1_2130	-	3-demethylubiquinone-9 3-methyltransferase
2103	 56.90	0	2613899..2614318	-	139	117925421	-	Mmc1_2131	-	hypothetical protein
2104	 56.86	0	2614333..2615331	+	332	117925422	-	Mmc1_2132	-	ribosomal large subunit pseudouridine synthase D
2105	 57.31	0	2615377..2615793	+	138	117925423	-	Mmc1_2133	-	hypothetical protein
2106	 53.05	0	2616366..2619251	+	961	117925424	-	Mmc1_2134	-	hypothetical protein
2107	 49.90	-1	2619515..2620009	-	164	117925425	-	Mmc1_2135	-	putative chemotaxis protein CheX
2108	 56.96	0	2620380..2621141	-	253	117925426	-	Mmc1_2136	-	phosphotransferase domain-containing protein
2109	 52.60	0	2621244..2622530	-	428	117925427	-	Mmc1_2137	-	TRAP dicarboxylate transporter, DctM subunit
2110	 52.12	0	2622527..2623069	-	180	117925428	-	Mmc1_2138	-	tripartite ATP-independent periplasmic transporter DctQ
2111	 51.17	0	2623170..2624195	-	341	117925429	-	Mmc1_2139	-	TRAP dicarboxylate transporter, DctP subunit
2112	 50.70	0	2624621..2625121	-	166	117925430	-	Mmc1_2140	-	thiol peroxidase (atypical 2-Cys peroxiredoxin)
2113	 54.68	0	2625347..2628616	-	1089	117925431	-	Mmc1_2141	-	hypothetical protein
2114	 52.13	0	2628826..2629341	-	171	117925432	-	Mmc1_2142	-	molybdenum cofactor guanylyltransferase
2115	 55.06	0	2629595..2630929	-	444	117925433	-	Mmc1_2143	-	peptidase M16 domain-containing protein
2116	 55.07	0	2630926..2632287	-	453	117925434	-	Mmc1_2144	-	peptidase M16 domain-containing protein
2117	 52.26	0	2632499..2632852	-	117	117925435	-	Mmc1_2145	-	hypothetical protein
2118	 53.12	0	2632900..2633379	-	159	117925436	-	Mmc1_2146	-	signal peptidase II
2119	 55.25	0	2633376..2636240	-	954	117925437	-	Mmc1_2147	-	isoleucyl-tRNA synthetase
2120	 55.52	0	2636290..2637213	-	307	117925438	-	Mmc1_2148	-	riboflavin kinase / FMN adenylyltransferase
54.32	MEAN

4.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.